# CCTM running error in CMAQv5.0.2
**URL:** https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609
**Category:** Run Time Errors and Issues
**Created:** [June 30, 2020, 6:56am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609 "2020-06-30T06:56:36Z")
**Posts on this page:** 12
**Page:** 1
### Author:  [@ddmmssddoo](https://forum.cmascenter.org/u/ddmmssddoo)
#### Post date: [June 30, 2020, 6:56am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/1 "2020-06-30T06:56:36Z")
Hi
When I was running cctm in domain 2, I got this error.
The model starts running with 1x13=13 cores.
```
File "OMI" opened for input on unit: 93
/home/eunae/CMAQv5.0.2/data/raw/phot/OMI.dat
>>--->> WARNING in subroutine O3TOTCOL on PE 000
Requested date is beyond available data on OMI file: <0:00:00 July 28, 2013
M3WARN: DTBUF 0:00:00 June 15, 2018
Total column ozone will be estimated from the corresponding Julian Day
of the last available year on the OMI input file:0:00:00 June 15, 2013 <<---<<
```
application called MPI\_Abort(MPI\_COMM\_WORLD, 0) - process 9
111.790u 2.040s 0:08.81 1292.0% 0+0k 0+352288io 0pf+0w
date
Tue Jun 30 15:50:53 KST 2020
exit
I thought it was an error in MPI, so I ran the core differently(1_10=10. 2_6=12, 4\*5=20 etc…).
However, the errors were all the same.
When I ran with 1x1=1 core, I got this error.
ERROR: Max number of EBI time step reductions exceeded
Convergence failure for cell ( 54, 3, 1)
Convergence failure for the following species:
NO2
```
*** ERROR ABORT in subroutine HRSOLVER on PE 000
ERROR: Stopping because of EBI convergence failures
Date and time 0:00:00 June 15, 2018 (2018166:000000)
```
application called MPI\_Abort(MPI\_COMM\_WORLD, 0) - process 0
58.030u 0.404s 0:58.51 99.8% 0+0k 0+351152io 0pf+0w
date
Tue Jun 30 15:23:25 KST 2020
exit
I don’t know why I got the error.
Someone could help me how can I do? Thanks in advance.
---
### Author:  [@fliu](https://forum.cmascenter.org/u/fliu)
#### Post date: [June 30, 2020, 5:29pm UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/2 "2020-06-30T17:29:05Z")
Hello,
Try again by reducing value of CTM\_MAXSYNC in your run script. Hope this helps.
Feng
---
### Author:  [@cgnolte](https://forum.cmascenter.org/u/cgnolte)
#### Post date: [July 1, 2020, 1:40am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/3 "2020-07-01T01:40:36Z")
Since it appears that the error is happening in the very first time step, it is likely not a chemistry issue. The model is aborting in the chemistry process, but there is probably bad data being fed to it. Look at the lines with “after” in your main log file. You should see checksums for total gas, aerosol, and nonreactive species after each science process. Are any of these becoming NaN or Infinity?
---
### Author:  [@ddmmssddoo](https://forum.cmascenter.org/u/ddmmssddoo)
#### Post date: [July 1, 2020, 3:35am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/4 "2020-07-01T03:35:13Z")
I set the CTM\_MAXSYNC to 60, and I ran it around, but I can’t.
---
### Author:  [@ddmmssddoo](https://forum.cmascenter.org/u/ddmmssddoo)
#### Post date: [July 1, 2020, 3:36am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/5 "2020-07-01T03:36:46Z")
I set it up like this.
setenv CTM\_MAXSYNC 720 #\> max sync time step (sec) [default: 720]
setenv CTM\_MINSYNC 60 #\> min sync time step (sec) [default: 60]
setenv CTM\_CKSUM Y #\> write cksum report [default: Y]
setenv CLD\_DIAG N #\> write cloud diagnostic file [default: N]
setenv CTM\_AERDIAG N #\> aerosol diagnostic file [default: N]
setenv CTM\_PHOTDIAG N #\> photolysis diagnostic file [default: N]
setenv CTM\_SSEMDIAG N #\> sea-salt emissions diagnostic file [default: N]
setenv CTM\_WB\_DUST Y #\> use inline windblown dust emissions [default: Y]
setenv CTM\_ERODE\_AGLAND N #\> use agricultural activity for windblown dust [default: N]; ignore if CTM\_WB\_DUST = N
setenv CTM\_DUSTEM\_DIAG N #\> windblown dust emissions diagnostic file [default: N]; ignore if CTM\_WB\_DUST = N
setenv CTM\_LTNG\_NO N #\> turn on lightning NOx [default: N]
setenv CTM\_WVEL Y #\> save derived vertical velocity component to conc file [default: N]
setenv KZMIN Y #\> use Min Kz option in edyintb [default: Y], otherwise revert to Kz0UT
setenv CTM\_ILDEPV Y #\> calculate in-line deposition velocities [default: Y]
setenv CTM\_MOSAIC N #\> landuse specific deposition velocities [default: N]
setenv CTM\_ABFLUX N #\> Ammonia bi-directional flux for in-line deposition velocities [default: N]; ignore if CTM\_ILDEPV = N
setenv CTM\_HGBIDI N #\> Mercury bi-directional flux for in-line deposition velocities [default: N]; ignore if CTM\_ILDEPV = N
setenv CTM\_SFC\_HONO Y #\> Surface HONO interaction [default: Y]; ignore if CTM\_ILDEPV = N
setenv CTM\_DEPV\_FILE N #\> write diagnostic file for deposition velocities [default: N]
setenv CTM\_BIOGEMIS N #\> calculate in-line biogenic emissions [default: N]
setenv B3GTS\_DIAG N #\> write biogenic mass emissions diagnostic file [default: N]; ignore if CTM\_BIOGEMIS = N
setenv CTM\_PT3DEMIS N #\> calculate in-line plume rise for elevated point emissions [default: N]
setenv PT3DDIAG Y #\> optional 3d point source emissions diagnostic file [default: N]; ignore if CTM\_PT3DEMIS = N
setenv PT3DFRAC N #\> optional layer fractions diagnostic (play) file(s) [default: N]; ignore if CTM\_PT3DEMIS = N
setenv IOAPI\_LOG\_WRITE F #\> turn on excess WRITE3 logging [options: T | F]
setenv FL\_ERR\_STOP N #\> stop on inconsistent input files
setenv PROMPTFLAG F #\> turn on I/O-API PROMPT\*FILE interactive mode [options: T | F]
setenv IOAPI\_OFFSET\_64 NO #\> support large timestep records (\>2GB/timestep record) [options: YES | NO]
setenv EXECUTION\_ID $EXEC #\> define the model execution id
---
### Author:  [@cgnolte](https://forum.cmascenter.org/u/cgnolte)
#### Post date: [July 1, 2020, 12:53pm UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/6 "2020-07-01T12:53:23Z")
You have set CTM\_CKSUM, so process checksums are computed and output to the main log file. Look for lines with the word “after” in the main log file–that may tell you where the problem is occurring.
Alternatively, since the crash occurs very early in your model run, the log file isn’t too big, so go ahead and post the entire log file.
---
### Author:  [@ddmmssddoo](https://forum.cmascenter.org/u/ddmmssddoo)
#### Post date: [July 2, 2020, 2:38am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/7 "2020-07-02T02:38:01Z")
This is log file.
```
This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
I/O Applications Programming Interface, [I/O API] which is
built on top of the netCDF I/O library (Copyright 1993, 1996
University Corporation for Atmospheric Research/Unidata
Program) and the PVM parallel-programming library (from
Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC
and Carlie J. Coats, Jr., and 2003-2006 Baron Advanced
Meteorological Systems, LLC and released under the GNU LGPL
License, version 2.1. See URL
http://www.baronams.com/products/ioapi/LGPL.txt
for conditions of use.
Library release tag: $JDate: 2010068 $
$Id: @(#) ioapi library version 3.1 $
Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048
netCDF version 4.1.3 of Mar 30 2015 17:28:43 $
EXECUTION_ID: CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi
Value for GRID_NAME: '02'
File "GRIDDESC" opened for input on unit: 98
/home/eunae/mcip/d02_2018166/GRIDDESC
Value for NPCOL_NPROW: '1 9'
Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE
"MET_CRO_3D" opened as OLD:READ-ONLY
File name "/home/eunae/mcip/d02_2018166/METCRO3D_d02_2018166"
File type GRDDED3
Execution ID "mcip"
Grid name "METCRO_02_CROSS"
Dimensions: 79 rows, 67 cols, 30 lays, 14 vbles
NetCDF ID: 65536 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 1105
GC Species Namelist:
```
/home/eunae/CMAQv5.0.2/scripts/cctm/BLD\_m3conc\_saprc99\_ae5/GC\_saprc99\_ae5\_aq.nml
```
AE Species Namelist:
```
/home/eunae/CMAQv5.0.2/scripts/cctm/BLD\_m3conc\_saprc99\_ae5/AE\_saprc99\_ae5\_aq.nml
```
NR Species Namelist:
```
/home/eunae/CMAQv5.0.2/scripts/cctm/BLD\_m3conc\_saprc99\_ae5/NR\_saprc99\_ae5\_aq.nml
```
TR Species Namelist:
```
/home/eunae/CMAQv5.0.2/scripts/cctm/BLD\_m3conc\_saprc99\_ae5/Species\_Table\_TR\_0.nml
Value for CONC\_SPCS not defined; returning defaultval ': ‘VARLIST’
```
>>--->> WARNING in subroutine GET_ENVLIST
Environment variable CONC_SPCS not set
Value for CONC_BLEV_ELEV not defined; returning defaultval ': 'VARLIST'
>>--->> WARNING in subroutine GET_ENVLIST
Environment variable CONC_BLEV_ELEV not set
Value for AVG_CONC_SPCS: 'ALL'
Value for ACONC_BLEV_ELEV: ' 1 1'
Value for CTM_WVEL: Y returning TRUE
Value for CTM_TSTEP: 10000
Value for CTM_PROGNAME not defined; returning defaultval ': 'DRIVER'
Main Program Name
Environment variable not set ... Using default: 62
Value for CTM_STDATE: 2018166
Value for CTM_STTIME: 0
Value for CTM_RUNLEN: 11040000
"GRID_CRO_2D" opened as OLD:READ-ONLY
File name "/home/eunae/mcip/d02_2018166/GRIDCRO2D_d02_2018166"
File type GRDDED3
Execution ID "mcip"
Grid name "GRIDOUT_02_CROSS"
Dimensions: 79 rows, 67 cols, 1 lays, 31 vbles
NetCDF ID: 131072 opened as READONLY
Time-independent data.
"INIT_GASC_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/icon/org_d02_2018-07/ICON_org_d02_2018-07_m3conc_saprc99_ae5"
File type GRDDED3
Execution ID "ICON_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 140 vbles
NetCDF ID: 196608 opened as READONLY
Time-independent data.
IC/BC Factors used for transported gas-phase species
1 NO2 1.0000
2 NO 1.0000
3 O3P 1.0000
4 O3 1.0000
5 NO3 1.0000
6 N2O5 1.0000
7 HNO3 1.0000
8 O1D2 1.0000
9 HO 1.0000
10 HONO 1.0000
11 HO2 1.0000
12 CO 1.0000
13 HNO4 1.0000
14 HO2H 1.0000
15 SO2 1.0000
16 SULF 1.0000
No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30
17 C_O2 1.0000
18 HCHO 1.0000
19 COOH 1.0000
20 MEOH 1.0000
21 RO2_R 1.0000
22 ROOH 1.0000
23 R2O2 1.0000
24 RO2_N 1.0000
25 RNO3 1.0000
26 MEK 1.0000
27 PROD2 1.0000
28 CCO_O2 1.0000
29 PAN 1.0000
30 CCO_OOH 1.0000
31 CCO_OH 1.0000
32 RCO_O2 1.0000
33 PAN2 1.0000
34 CCHO 1.0000
35 RCO_OOH 1.0000
36 RCO_OH 1.0000
37 BZCO_O2 1.0000
38 PBZN 1.0000
39 BZ_O 1.0000
40 MA_RCO3 1.0000
41 MA_PAN 1.0000
42 TBU_O 1.0000
43 ACET 1.0000
44 NPHE 1.0000
45 PHEN 1.0000
46 BZNO2_O 1.0000
47 HOCOO 1.0000
48 HCOOH 1.0000
49 RCHO 1.0000
50 GLY 1.0000
51 MGLY 1.0000
52 BACL 1.0000
53 CRES 1.0000
54 BALD 1.0000
55 METHACRO 1.0000
56 MVK 1.0000
57 ISOPROD 1.0000
58 DCB1 1.0000
59 DCB2 1.0000
60 DCB3 1.0000
61 ETHENE 1.0000
62 ISOPRENE 1.0000
No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30
63 TRP1 1.0000
No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30
64 ALK1 1.0000
65 ALK2 1.0000
66 ALK3 1.0000
67 ALK4 1.0000
68 ALK5 1.0000
No IC found for species ALK5RXN in INIT_GASC_1; set to 1.00E-30
69 ARO1 1.0000
70 ARO1RO2 1.0000
No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30
No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30
71 ARO2 1.0000
72 ARO2RO2 1.0000
No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30
No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30
73 BENZENE 1.0000
74 BENZRO2 1.0000
No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30
No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30
75 OLE1 1.0000
76 OLE2 1.0000
77 SESQ 1.0000
No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30
GC loaded into CGRID
Density*Jacobian loaded into CGRID
"INIT_AERO_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/icon/org_d02_2018-07/ICON_org_d02_2018-07_m3conc_saprc99_ae5"
File type GRDDED3
Execution ID "ICON_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 140 vbles
NetCDF ID: 262144 opened as READONLY
Time-independent data.
IC/BC Factors used for transported aerosol species
78 ASO4J 1.0000
79 ASO4I 1.0000
80 ANH4J 1.0000
81 ANH4I 1.0000
82 ANO3J 1.0000
83 ANO3I 1.0000
84 AALKJ 1.0000
85 AXYL1J 1.0000
86 AXYL2J 1.0000
87 AXYL3J 1.0000
88 ATOL1J 1.0000
89 ATOL2J 1.0000
90 ATOL3J 1.0000
91 ABNZ1J 1.0000
92 ABNZ2J 1.0000
93 ABNZ3J 1.0000
94 ATRP1J 1.0000
95 ATRP2J 1.0000
96 AISO1J 1.0000
97 AISO2J 1.0000
98 ASQTJ 1.0000
99 AORGCJ 1.0000
100 AORGPAJ 1.0000
101 AORGPAI 1.0000
102 AECJ 1.0000
103 AECI 1.0000
104 A25J 1.0000
No IC found for species A25I in INIT_AERO_1; set to 1.00E-30
105 ACORS 1.0000
106 ASOIL 1.0000
107 NUMATKN 1.0000
108 NUMACC 1.0000
109 NUMCOR 1.0000
110 SRFATKN 1.0000
111 SRFACC 1.0000
112 SRFCOR 1.0000
113 AH2OJ 1.0000
114 AH2OI 1.0000
115 ANAJ 1.0000
No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30
116 ACLJ 1.0000
117 ACLI 1.0000
118 ANAK 1.0000
119 ACLK 1.0000
120 ASO4K 1.0000
121 ANH4K 1.0000
122 ANO3K 1.0000
123 AH2OK 1.0000
124 AISO3J 1.0000
125 AOLGAJ 1.0000
126 AOLGBJ 1.0000
AE loaded into CGRID
"INIT_NONR_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/icon/org_d02_2018-07/ICON_org_d02_2018-07_m3conc_saprc99_ae5"
File type GRDDED3
Execution ID "ICON_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 140 vbles
NetCDF ID: 327680 opened as READONLY
Time-independent data.
IC/BC Factors used for transported non-reactive gas species
127 NH3 1.0000
128 HCL 1.0000
129 SV_ALK 1.0000
130 SV_XYL1 1.0000
131 SV_XYL2 1.0000
132 SV_TOL1 1.0000
133 SV_TOL2 1.0000
134 SV_BNZ1 1.0000
135 SV_BNZ2 1.0000
136 SV_TRP1 1.0000
137 SV_TRP2 1.0000
138 SV_ISO1 1.0000
139 SV_ISO2 1.0000
140 SV_SQT 1.0000
NR loaded into CGRID
CTM_CONC_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.CONC.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
Could not open CTM_CONC_1 for update - try to open new
Conc File Header Description:
=> Concentration file output
=> From CMAQ model dyn alloc version CTM
=> Set of variables (possibly) reduced from CGRID
=> For next scenario continuation runs,
=> use the "one-step" CGRID file
=> Layer 1 to 1
=> Layer 2 to 2
=> Layer 3 to 3
=> Layer 4 to 4
=> Layer 5 to 5
=> Layer 6 to 6
=> Layer 7 to 7
=> Layer 8 to 8
=> Layer 9 to 9
=> Layer 10 to 10
=> Layer 11 to 11
=> Layer 12 to 12
=> Layer 13 to 13
=> Layer 14 to 14
=> Layer 15 to 15
=> Layer 16 to 16
=> Layer 17 to 17
=> Layer 18 to 18
=> Layer 19 to 19
=> Layer 20 to 20
=> Layer 21 to 21
=> Layer 22 to 22
=> Layer 23 to 23
=> Layer 24 to 24
=> Layer 25 to 25
=> Layer 26 to 26
=> Layer 27 to 27
=> Layer 28 to 28
=> Layer 29 to 29
=> Layer 30 to 30
Gas Chem species saved to CONC file:
Value for IOAPI_LOG_WRITE: F returning FALSE
1 ( 1) NO2
2 ( 2) NO
3 ( 3) O3P
4 ( 4) O3
5 ( 5) NO3
6 ( 6) N2O5
7 ( 7) HNO3
8 ( 8) O1D2
9 ( 9) HO
10 ( 10) HONO
11 ( 11) HO2
12 ( 12) CO
13 ( 13) HNO4
14 ( 14) HO2H
15 ( 15) SO2
16 ( 16) SULF
17 ( 17) C_O2
18 ( 18) HCHO
19 ( 19) COOH
20 ( 20) MEOH
21 ( 21) RO2_R
22 ( 22) ROOH
23 ( 23) R2O2
24 ( 24) RO2_N
25 ( 25) RNO3
26 ( 26) MEK
27 ( 27) PROD2
28 ( 28) CCO_O2
29 ( 29) PAN
30 ( 30) CCO_OOH
31 ( 31) CCO_OH
32 ( 32) RCO_O2
33 ( 33) PAN2
34 ( 34) CCHO
35 ( 35) RCO_OOH
36 ( 36) RCO_OH
37 ( 37) BZCO_O2
38 ( 38) PBZN
39 ( 39) BZ_O
40 ( 40) MA_RCO3
41 ( 41) MA_PAN
42 ( 42) TBU_O
43 ( 43) ACET
44 ( 44) NPHE
45 ( 45) PHEN
46 ( 46) BZNO2_O
47 ( 47) HOCOO
48 ( 48) HCOOH
49 ( 49) RCHO
50 ( 50) GLY
51 ( 51) MGLY
52 ( 52) BACL
53 ( 53) CRES
54 ( 54) BALD
55 ( 55) METHACRO
56 ( 56) MVK
57 ( 57) ISOPROD
58 ( 58) DCB1
59 ( 59) DCB2
60 ( 60) DCB3
61 ( 61) ETHENE
62 ( 62) ISOPRENE
63 ( 63) TRP1
64 ( 64) ALK1
65 ( 65) ALK2
66 ( 66) ALK3
67 ( 67) ALK4
68 ( 68) ALK5
69 ( 69) ARO1
70 ( 70) ARO1RO2
71 ( 71) ARO2
72 ( 72) ARO2RO2
73 ( 73) BENZENE
74 ( 74) BENZRO2
75 ( 75) OLE1
76 ( 76) OLE2
77 ( 77) SESQ
Aerosol species saved to CONC file:
1 ( 78) ASO4J
2 ( 79) ASO4I
3 ( 80) ANH4J
4 ( 81) ANH4I
5 ( 82) ANO3J
6 ( 83) ANO3I
7 ( 84) AALKJ
8 ( 85) AXYL1J
9 ( 86) AXYL2J
10 ( 87) AXYL3J
11 ( 88) ATOL1J
12 ( 89) ATOL2J
13 ( 90) ATOL3J
14 ( 91) ABNZ1J
15 ( 92) ABNZ2J
16 ( 93) ABNZ3J
17 ( 94) ATRP1J
18 ( 95) ATRP2J
19 ( 96) AISO1J
20 ( 97) AISO2J
21 ( 98) ASQTJ
22 ( 99) AORGCJ
23 (100) AORGPAJ
24 (101) AORGPAI
25 (102) AECJ
26 (103) AECI
27 (104) A25J
28 (105) ACORS
29 (106) ASOIL
30 (107) NUMATKN
31 (108) NUMACC
32 (109) NUMCOR
33 (110) SRFATKN
34 (111) SRFACC
35 (112) SRFCOR
36 (113) AH2OJ
37 (114) AH2OI
38 (115) ANAJ
39 (116) ACLJ
40 (117) ACLI
41 (118) ANAK
42 (119) ACLK
43 (120) ASO4K
44 (121) ANH4K
45 (122) ANO3K
46 (123) AH2OK
47 (124) AISO3J
48 (125) AOLGAJ
49 (126) AOLGBJ
Non-reactive species saved to CONC file:
1 (127) NH3
2 (128) HCL
3 (129) SV_ALK
4 (130) SV_XYL1
5 (131) SV_XYL2
6 (132) SV_TOL1
7 (133) SV_TOL2
8 (134) SV_BNZ1
9 (135) SV_BNZ2
10 (136) SV_TRP1
11 (137) SV_TRP2
12 (138) SV_ISO1
13 (139) SV_ISO2
14 (140) SV_SQT
Derived Vert Vel Comp species saved to CONC file: W_VEL
Timestep written to CTM_CONC_1 for date and time 2018166:000000
from timestep on initial data files for date and time 2018166:000000
```
after INITSCEN G 1.2127509E-01 A 7.7093043E+08 N 6.5386208E-05
---
### Author:  [@ddmmssddoo](https://forum.cmascenter.org/u/ddmmssddoo)
#### Post date: [July 2, 2020, 2:44am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/8 "2020-07-02T02:44:24Z")
```
= = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = =
Value for FL_ERR_STOP: N returning FALSE
Value for CTM_RUNLEN: 11040000
"GRID_DOT_2D" opened as OLD:READ-ONLY
File name "/home/eunae/mcip/d02_2018166/GRIDDOT2D_d02_2018166"
File type GRDDED3
Execution ID "mcip"
Grid name "GRIDOUT_02_DOT"
Dimensions: 80 rows, 68 cols, 1 lays, 9 vbles
NetCDF ID: 393216 opened as READONLY
Time-independent data.
Checking header data for file: GRID_DOT_2D
Checking header data for file: GRID_CRO_2D
GRID_CRO_3D :GRID_CRO_3D
>>--->> WARNING in subroutine OPEN3
File not available.
GRID_BDY_2D :GRID_BDY_2D
>>--->> WARNING in subroutine OPEN3
File not available.
"EMIS_1" opened as OLD:READ-ONLY
File name "/home/eunae/SMOKEv3.5/data/run_saprc99_org_d02_2018-07/output/merge/egts_l.2018166.46.SMK.saprc99_org_d02_2018-07.ncf"
File type GRDDED3
Execution ID "????????????????"
Grid name "02"
Dimensions: 79 rows, 67 cols, 23 lays, 56 vbles
NetCDF ID: 458752 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 1104
Checking header data for file: EMIS_1
netCDF error number -40
Ending time not on file
"OCEAN_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/ocean/FIP_LAND.EI_09_01.ncf"
File type GRDDED3
Execution ID "????????????????"
Grid name "LAM_38N126"
Dimensions: 79 rows, 67 cols, 1 lays, 5 vbles
NetCDF ID: 524288 opened as READONLY
Time-independent data.
Checking header data for file: OCEAN_1
MET_BDY_2D :MET_BDY_2D
>>--->> WARNING in subroutine OPEN3
File not available.
"MET_BDY_3D" opened as OLD:READ-ONLY
File name "/home/eunae/mcip/d02_2018166/METBDY3D_d02_2018166"
File type BNDARY3
Execution ID "mcip"
Grid name "METCRO_02_CROSS"
Dimensions: 79 rows, 67 cols, 30 lays, 14 vbles, 1 cells thick
NetCDF ID: 589824 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 1105
Checking header data for file: MET_BDY_3D
"MET_DOT_3D" opened as OLD:READ-ONLY
File name "/home/eunae/mcip/d02_2018166/METDOT3D_d02_2018166"
File type GRDDED3
Execution ID "mcip"
Grid name "METDOT_02_DOT"
Dimensions: 80 rows, 68 cols, 30 lays, 6 vbles
NetCDF ID: 655360 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 1105
Checking header data for file: MET_DOT_3D
"MET_CRO_2D" opened as OLD:READ-ONLY
File name "/home/eunae/mcip/d02_2018166/METCRO2D_d02_2018166"
File type GRDDED3
Execution ID "mcip"
Grid name "METCRO_02_CROSS"
Dimensions: 79 rows, 67 cols, 1 lays, 34 vbles
NetCDF ID: 720896 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 1105
Checking header data for file: MET_CRO_2D
Checking header data for file: MET_CRO_3D
"CTM_CONC_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.CONC.m3conc_saprc99_ae5_20180615"
File type GRDDED3
Execution ID "CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 141 vbles
NetCDF ID: 786432 opened as VOLATILE READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 1
Checking header data for file: CTM_CONC_1
CTM_DRY_DEP_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.DRYDEP.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_WET_DEP_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.WETDEP1.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_WET_DEP_2 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.WETDEP2.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_SSEMIS_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.SSEMIS.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_DUST_EMIS_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.DUSTEMIS.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_VIS_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.AEROVIS.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_DIAM_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.AERODIAM.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_IPR_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.PA_1.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_IPR_2 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.PA_2.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_IPR_3 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.PA_3.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_IRR_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.IRR_1.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_IRR_2 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.IRR_2.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_IRR_3 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.IRR_3.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
A_CONC_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.ACONC.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
S_CGRID :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.CGRID.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
Checking header data for file: INIT_GASC_1
"BNDY_GASC_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/bcon/org_d02_2018-07/BCON_org_d02_2018-07_m3conc_saprc99_ae5"
File type BNDARY3
Execution ID "BCON_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 140 vbles, 1 cells thick
NetCDF ID: 851968 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 110
Checking header data for file: BNDY_GASC_1
Checking header data for file: INIT_AERO_1
"BNDY_AERO_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/bcon/org_d02_2018-07/BCON_org_d02_2018-07_m3conc_saprc99_ae5"
File type BNDARY3
Execution ID "BCON_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 140 vbles, 1 cells thick
NetCDF ID: 917504 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 110
Checking header data for file: BNDY_AERO_1
Checking header data for file: INIT_NONR_1
"BNDY_NONR_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/bcon/org_d02_2018-07/BCON_org_d02_2018-07_m3conc_saprc99_ae5"
File type BNDARY3
Execution ID "BCON_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 140 vbles, 1 cells thick
NetCDF ID: 983040 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 110
Checking header data for file: BNDY_NONR_1
"INIT_TRAC_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/icon/org_d02_2018-07/ICON_org_d02_2018-07_m3conc_saprc99_ae5"
File type GRDDED3
Execution ID "ICON_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 140 vbles
NetCDF ID: 1048576 opened as READONLY
Time-independent data.
Checking header data for file: INIT_TRAC_1
"BNDY_TRAC_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/bcon/org_d02_2018-07/BCON_org_d02_2018-07_m3conc_saprc99_ae5"
File type BNDARY3
Execution ID "BCON_m3conc_saprc99_ae5_Linux2_x86_64pgi"
Grid name "02"
Dimensions: 79 rows, 67 cols, 30 lays, 140 vbles, 1 cells thick
NetCDF ID: 1114112 opened as READONLY
Starting date and time 2018166:000000 (0:00:00 June 15, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 110
Checking header data for file: BNDY_TRAC_1
DEPV_TRAC_1 :DEPV_TRAC_1
>>--->> WARNING in subroutine OPEN3
File not available.
EMIS_TRAC_1 :EMIS_TRAC_1
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_DEPV_DIAG :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.DEPV.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_PT3D_DIAG :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.PT3D.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_RJ_1 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.PHOTDIAG1.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_RJ_2 :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.PHOTDIAG2.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
INIT_MEDC_1 :INIT_MEDC_1
>>--->> WARNING in subroutine OPEN3
File not available.
MEDIA_CONC :MEDIA_CONC
>>--->> WARNING in subroutine OPEN3
File not available.
REGIONS_1 :REGIONS_1
>>--->> WARNING in subroutine OPEN3
File not available.
EMIS_A :EMIS_A
>>--->> WARNING in subroutine OPEN3
File not available.
EMIS_B :EMIS_B
>>--->> WARNING in subroutine OPEN3
File not available.
EMIS_M :EMIS_M
>>--->> WARNING in subroutine OPEN3
File not available.
EMIS_P :EMIS_P
>>--->> WARNING in subroutine OPEN3
File not available.
EMIS_N :EMIS_N
>>--->> WARNING in subroutine OPEN3
File not available.
INIT_GASC_S :INIT_GASC_S
>>--->> WARNING in subroutine OPEN3
File not available.
INIT_AERO_S :INIT_AERO_S
>>--->> WARNING in subroutine OPEN3
File not available.
INIT_NONR_S :INIT_NONR_S
>>--->> WARNING in subroutine OPEN3
File not available.
BNDY_GASC_S :BNDY_GASC_S
>>--->> WARNING in subroutine OPEN3
File not available.
BNDY_AERO_S :BNDY_AERO_S
>>--->> WARNING in subroutine OPEN3
File not available.
BNDY_NONR_S :BNDY_NONR_S
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_SENS_1 :CTM_SENS_1
>>--->> WARNING in subroutine OPEN3
File not available.
A_SENS_1 :A_SENS_1
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_SWETDEP_1 :CTM_SWETDEP_1
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_SDRYDEP_1 :CTM_SDRYDEP_1
>>--->> WARNING in subroutine OPEN3
File not available.
"DUST_LU_1" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/dust/beld3_CMAQ-BENCHMARK_output_a.ncf"
File type GRDDED3
Execution ID "????????????????"
Grid name "CMAQ-BENCHMARK"
Dimensions: 122 rows, 127 cols, 1 lays, 120 vbles
NetCDF ID: 1179648 opened as READONLY
Time-independent data.
Checking header data for file: DUST_LU_1
Inconsistent values for GL_NCOLS: 127 versus 67
Inconsistent values for GL_NROWS: 122 versus 79
Inconsistent values for P_ALP: 3.3000E+01 versus 3.0000E+01
Inconsistent values for P_BET: 4.5000E+01 versus 6.0000E+01
Inconsistent values for P_GAM: -9.7000E+01 versus 1.2600E+02
Inconsistent values for XORIG: 5.0400E+05 versus -1.4850E+05
Inconsistent values for YORIG: -1.4880E+06 versus -5.6700E+05
Inconsistent values for XCENT: -9.7000E+01 versus 1.2600E+02
Inconsistent values for YCENT: 4.0000E+01 versus 3.8000E+01
Inconsistent values for XCELL: 1.2000E+04 versus 9.0000E+03
Inconsistent values for YCELL: 1.2000E+04 versus 9.0000E+03
"DUST_LU_2" opened as OLD:READ-ONLY
File name "/home/eunae/CMAQv5.0.2/data/dust/beld3_CMAQ-BENCHMARK_output_tot.ncf"
File type GRDDED3
Execution ID "????????????????"
Grid name "CMAQ-BENCHMARK"
Dimensions: 122 rows, 127 cols, 1 lays, 1 vbles
NetCDF ID: 1245184 opened as READONLY
Time-independent data.
Checking header data for file: DUST_LU_2
Inconsistent values for GL_NCOLS: 127 versus 67
Inconsistent values for GL_NROWS: 122 versus 79
Inconsistent values for P_ALP: 3.3000E+01 versus 3.0000E+01
Inconsistent values for P_BET: 4.5000E+01 versus 6.0000E+01
Inconsistent values for P_GAM: -9.7000E+01 versus 1.2600E+02
Inconsistent values for XORIG: 5.0400E+05 versus -1.4850E+05
Inconsistent values for YORIG: -1.4880E+06 versus -5.6700E+05
Inconsistent values for XCENT: -9.7000E+01 versus 1.2600E+02
Inconsistent values for YCENT: 4.0000E+01 versus 3.8000E+01
Inconsistent values for XCELL: 1.2000E+04 versus 9.0000E+03
Inconsistent values for YCELL: 1.2000E+04 versus 9.0000E+03
CTM_DEPV_MOS :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.DEPVMOS.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_DRY_DEP_MOS :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.DDMOS.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_DRY_DEP_FST :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.DDFST.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_DEPV_FST :/home/eunae/CMAQv5.0.2/data/cctm/org_d02_2018-07/CCTM_m3conc_saprc99_ae5_Linux2_x86_64pgi.DEPVFST.m3conc_saprc99_ae5_20180615
>>--->> WARNING in subroutine OPEN3
File not available.
E2C_FERT :E2C_FERT
>>--->> WARNING in subroutine OPEN3
File not available.
E2C_SOIL :E2C_SOIL
>>--->> WARNING in subroutine OPEN3
File not available.
BELD4_LU :BELD4_LU
>>--->> WARNING in subroutine OPEN3
File not available.
CTM_SD_TS :CTM_SD_TS
>>--->> WARNING in subroutine OPEN3
File not available.
>>--->> WARNING in subroutine FLCHECK on PE 008
Inconsistent header data on input files
M3WARN: DTBUF 0:00:00 June 15, 2018
= = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = =
Value for CTM_MAXSYNC: 720
Value for CTM_MINSYNC: 60
Value for CTM_ADV_CFL not defined; returning default : 0.75
Maximum CFL number allowed
Value for SIGMA_SYNC_TOP not defined; returning default : 0.7
Minimum layer limit for which adv = sync
Value for ADV_HDIV_LIM not defined; returning default : 0.9
Maximum horiz. div. limit for adv step adjustment
Top layer thru which sync step determined: 12
From ADVSTEP - date/time: 2018166/000000
Computed synchronization step (HHMMSS): 000730
Number of Synchronization steps: 8
Layer Advection per Sync
Step (HHMMSS) Step
30 000730 1
29 000730 1
28 000345 2
27 000345 2
26 000230 3
25 000130 5
24 000130 5
23 000130 5
22 000130 5
21 000130 5
20 000130 5
19 000130 5
18 000230 3
17 000345 2
16 000345 2
15 000730 1
14 000730 1
13 000730 1
12 000730 1
11 000730 1
10 000730 1
9 000730 1
8 000730 1
7 000730 1
6 000730 1
5 000730 1
4 000730 1
3 000730 1
2 000730 1
1 000730 1
Value for CTM_CKSUM: Y returning TRUE
Value for CTM_ILDEPV: Y returning TRUE
Value for CTM_ABFLUX: N returning FALSE
Value for CTM_SFC_HONO: Y returning TRUE
Value for CTM_MOSAIC: N returning FALSE
Value for CTM_DEPV_FILE: N returning FALSE
Flag for writing the DEPV diagnostic file
DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE
DEPV_INIT: completed INIT_GAS_DV block
Value for CTM_BIOGEMIS: N returning FALSE
>>--->> WARNING in subroutine OPEMIS on PE 008
Emissions species HONO not found on EMIS_1
M3WARN: DTBUF 0:00:00 June 15, 2018
>>--->> WARNING in subroutine OPEMIS on PE 008
Emissions species ARO1NBZ not found on EMIS_1
M3WARN: DTBUF 0:00:00 June 15, 2018
>>--->> WARNING in subroutine OPEMIS on PE 008
Emissions species BENZENE not found on EMIS_1
M3WARN: DTBUF 0:00:00 June 15, 2018
Gas Chemistry Emissions Processing in Vertical diffusion ...
Non-reactives Emissions Processing in Vertical diffusion ...
Number of Emissions Layers: 23
out of total Number of Model Layers: 30
Value for CTM_STDATE: 2018166
Value for CTM_STTIME: 0
Value for CTM_RUNLEN: 11040000
Value for CTM_LTNG_NO: N returning FALSE
Aerosol Emissions Processing in Vertical diffusion ...
--- Precursor Species Mapped ---
Value for CTM_SSEMDIAG: N returning FALSE
Value for CTM_PT3DEMIS: N returning FALSE
```
# ====================================================================== — Subroutine: M3DRY — Found canopy wetness (WR) in MET\_CRO\_2D
# ====================================================================== — Subroutine: M3DRY — Found 2-m water vapor mixing ratio (Q2) in MET\_CRO\_2D
```
>>--->> WARNING in subroutine GET_EMIS:INTERPX
Variable "HONO" not in file EMIS_1
M3WARN: DTBUF 0:03:45 June 15, 2018
>>--->> WARNING in subroutine GET_EMIS on PE 008
Could not read HONO from EMIS_1
M3WARN: DTBUF 0:03:45 June 15, 2018
>>--->> WARNING in subroutine GET_EMIS:INTERPX
Variable "ARO1NBZ" not in file EMIS_1
M3WARN: DTBUF 0:03:45 June 15, 2018
>>--->> WARNING in subroutine GET_EMIS on PE 008
Could not read ARO1NBZ from EMIS_1
M3WARN: DTBUF 0:03:45 June 15, 2018
>>--->> WARNING in subroutine GET_EMIS:INTERPX
Variable "BENZENE" not in file EMIS_1
M3WARN: DTBUF 0:03:45 June 15, 2018
>>--->> WARNING in subroutine GET_EMIS on PE 008
Could not read BENZENE from EMIS_1
M3WARN: DTBUF 0:03:45 June 15, 2018
Value for KZMIN: Y returning TRUE
Maximum eddy diffusivity of: 1000.0 (m**2/sec)
at col, row, layer: 30, 1, 1
corresponding to a free tropospheric wind shear of: 6.24079E-03 (/sec),
a bulk Richardson Number of: 5.2055 ,
and pot. temps. in layer and layer+1: 292.60 292.84
```
after VDIFF G 2.3666389E+00 A 7.7070502E+08 N 6.5169435E-05
after COUPLE\_WR G 2.2604117E+04 A 9.3369422E+12 N 6.6592467E-01
```
No BC's in file BNDY_AERO_1 for the following adv species: Set to 1.00E-30
A25I
ANAI
Reading U-windfield from MET_DOT_3D for variable: UWINDC
Reading V-windfield from MET_DOT_3D for variable: VWINDC
layer S (X3FACE_GD) Delta S
1 0.0040000 0.0040000 1.0000000
2 0.0100000 0.0060000 1.0000000
3 0.0200000 0.0100000 1.0000000
4 0.0220000 0.0020000 1.0000000
5 0.0360000 0.0140000 1.0000000
6 0.0540000 0.0180000 1.0000000
7 0.0780000 0.0240000 1.0000000
8 0.1060000 0.0280000 1.0000000
9 0.1400000 0.0340000 1.0000000
10 0.1830000 0.0430000 1.0000000
11 0.2340000 0.0510000 1.0000000
12 0.2930000 0.0590000 1.0000000
13 0.3560000 0.0630000 1.0000000
14 0.4240000 0.0680000 1.0000000
15 0.4930000 0.0689999 1.0000000
16 0.5560000 0.0630000 1.0000000
17 0.6200000 0.0640000 1.0000000
18 0.6760000 0.0560000 1.0000000
19 0.7270000 0.0510000 1.0000000
20 0.7720000 0.0450000 1.0000000
21 0.8120000 0.0400000 1.0000000
22 0.8480000 0.0360000 1.0000000
23 0.8550000 0.0070000 1.0000000
24 0.8790000 0.0240000 1.0000000
25 0.9070000 0.0280000 1.0000000
26 0.9310000 0.0240000 1.0000000
27 0.9520000 0.0210000 1.0000000
28 0.9710000 0.0190000 1.0000000
29 0.9860000 0.0150000 1.0000000
30 1.0000000 0.0140000 1.0000000
```
after ADV G 2.0968480E+04 A 9.3995800E+12 N 6.6565633E-01
```
H-eddy DT & integration steps: 4.5000000E+02 1
```
after HDIFF G 6.0218614E+15 A 9.3995810E+12 N 6.6565639E-01
after DECOUPLE\_ G 5.8710714E+11 A 7.7375834E+08 N 6.5155073E-05
Value for CLD\_DIAG: N returning FALSE
```
>>--->> WARNING in subroutine RESCLD on PE 008
Parameter QI (cloud ice) was not found on file MET_CRO_3D
M3WARN: DTBUF 0:00:00 June 15, 2018
YOU SHOULD VERIFY that the cloud microphysics scheme used
in the Meteorological Model did not include ice/snow. If
it did, then you need to reprocess the meteorological data
through MCIP and pass QI to file MET_CRO_3D to avoid
errors in the wet deposition.
Processing will continue with QI set to ZERO. <<---<<
>>--->> WARNING in subroutine RESCLD on PE 008
Parameter QS (snow) was not found on file MET_CRO_3D
M3WARN: DTBUF 0:00:00 June 15, 2018
YOU SHOULD VERIFY that the cloud microphysics scheme used
in the Meteorological Model did not include ice/snow. If
it did, then you need to reprocess the meteorological data
through MCIP and pass QS to file MET_CRO_3D to avoid
errors in the wet deposition.
Processing will continue with QS set to ZERO. <<--<<
no surrogates for aqueous species CO2...using background value of 340.0000
no surrogates for aqueous species CACO3...using background value of 0.0000
no surrogates for aqueous species MGCO3...using background value of 0.0000
no surrogates for aqueous species A3FE...using background value of 0.0100
no surrogates for aqueous species B2MN...using background value of 0.0050
no surrogates for aqueous species K...using background value of 0.0000
```
after CLDPROC G 5.8710714E+11 A 7.7363686E+08 N 6.5094653E-05
```
Euler Backward Iterative Parameters -
Chemistry Integration Time Interval (min): 7.5000
EBI maximum time step (min): 2.5000
Species convergence tolerances:
NO2 1.00E-03
NO 1.00E-03
O3P 1.00E+00
O3 1.00E-03
NO3 1.00E-03
N2O5 1.00E-03
HNO3 1.00E-03
O1D2 1.00E+00
HO 1.00E-03
HONO 1.00E-03
HO2 1.00E-03
CO 1.00E-03
HNO4 1.00E-03
HO2H 1.00E-03
SO2 1.00E-03
SULF 1.00E+00
SULRXN 1.00E+00
C_O2 1.00E-03
HCHO 1.00E-03
COOH 1.00E-03
MEOH 1.00E-03
RO2_R 1.00E-03
ROOH 1.00E-03
R2O2 1.00E-03
RO2_N 1.00E-03
RNO3 1.00E-03
MEK 1.00E-03
PROD2 1.00E-03
CCO_O2 1.00E-03
PAN 1.00E-03
CCO_OOH 1.00E-03
CCO_OH 1.00E-03
RCO_O2 1.00E-03
PAN2 1.00E-03
CCHO 1.00E-03
RCO_OOH 1.00E-03
RCO_OH 1.00E-03
BZCO_O2 1.00E-03
PBZN 1.00E-03
BZ_O 1.00E+00
MA_RCO3 1.00E-03
MA_PAN 1.00E-03
TBU_O 1.00E+00
ACET 1.00E-03
NPHE 1.00E-03
PHEN 1.00E-03
BZNO2_O 1.00E+00
HOCOO 1.00E+00
HCOOH 1.00E-03
RCHO 1.00E-03
GLY 1.00E-03
MGLY 1.00E-03
BACL 1.00E-03
CRES 1.00E-03
BALD 1.00E-03
METHACRO 1.00E-03
MVK 1.00E-03
ISOPROD 1.00E-03
DCB1 1.00E-03
DCB2 1.00E-03
DCB3 1.00E-03
ETHENE 1.00E-03
ISOPRENE 1.00E-03
ISOPRXN 1.00E+00
TRP1 1.00E-03
TRPRXN 1.00E+00
ALK1 1.00E-03
ALK2 1.00E-03
ALK3 1.00E-03
ALK4 1.00E-03
ALK5 1.00E-03
ALK5RXN 1.00E+00
ARO1 1.00E-03
ARO1RO2 1.00E-03
TOLNRXN 1.00E+00
TOLHRXN 1.00E+00
ARO2 1.00E-03
ARO2RO2 1.00E-03
XYLNRXN 1.00E+00
XYLHRXN 1.00E+00
BENZENE 1.00E-03
BENZRO2 1.00E-03
BNZNRXN 1.00E+00
BNZHRXN 1.00E+00
OLE1 1.00E-03
OLE2 1.00E-03
SESQ 1.00E-03
SESQRXN 1.00E+00
```
---
### Author:  [@ddmmssddoo](https://forum.cmascenter.org/u/ddmmssddoo)
#### Post date: [July 2, 2020, 2:44am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/9 "2020-07-02T02:44:39Z")
```
Value for CTM_PHOTDIAG: N returning FALSE
File "CSQY_DATA" opened for input on unit: 94
/home/eunae/CMAQv5.0.2/scripts/cctm/BLD_m3conc_saprc99_ae5/CSQY_DATA_saprc99_ae5_aq
```
Sucessfully Loaded JTABLE
PHOT: Identified USGS24 land use scheme for surface albedo used by inline photolysis calculation.
```
File "OMI" opened for input on unit: 93
/home/eunae/CMAQv5.0.2/data/raw/phot/OMI.dat
>>--->> WARNING in subroutine O3TOTCOL on PE 008
Requested date is beyond available data on OMI file: <0:00:00 July 28, 2013
M3WARN: DTBUF 0:00:00 June 15, 2018
Total column ozone will be estimated from the corresponding Julian Day
of the last available year on the OMI input file:0:00:00 June 15, 2013 <<---<<
```
WARNING: EBI Euler convergence failure
Reducing EBI time step because of MAXPRED convergence failure for
Cell ( 11, 1, 1) and species NO2 Back-up number 1
WARNING: EBI Euler convergence failure
Reducing EBI time step because of MAXPRED convergence failure for
Cell ( 11, 1, 1) and species NO2 Back-up number 2
WARNING: EBI Euler convergence failure
Reducing EBI time step because of MAXPRED convergence failure for
Cell ( 11, 1, 1) and species NO2 Back-up number 3
WARNING: EBI Euler convergence failure
Reducing EBI time step because of MAXPRED convergence failure for
Cell ( 11, 1, 1) and species NO2 Back-up number 4
WARNING: EBI Euler convergence failure
Reducing EBI time step because of MAXPRED convergence failure for
Cell ( 11, 1, 1) and species NO2 Back-up number 5
ERROR: Max number of EBI time step reductions exceeded
Convergence failure for cell ( 11, 1, 1)
Convergence failure for the following species:
NO2
```
*** ERROR ABORT in subroutine HRSOLVER on PE 008
ERROR: Stopping because of EBI convergence failures
```
PM3EXIT: DTBUF 0:00:00 June 15, 2018
Date and time 0:00:00 June 15, 2018 (2018166:000000)
---
### Author:  [@ddmmssddoo](https://forum.cmascenter.org/u/ddmmssddoo)
#### Post date: [July 2, 2020, 2:46am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/10 "2020-07-02T02:46:32Z")
Output files should generate
CCTM\_m3prof\_saprc99\_ae5\_Linux2\_x86\_64pgi.ACONC.m3prof\_saprc99\_ae5\_20180615
CCTM\_m3prof\_saprc99\_ae5\_Linux2\_x86\_64pgi.AEROVIS.m3prof\_saprc99\_ae5\_20180615
CCTM\_m3prof\_saprc99\_ae5\_Linux2\_x86\_64pgi.CONC.m3prof\_saprc99\_ae5\_20180615
CCTM\_m3prof\_saprc99\_ae5\_Linux2\_x86\_64pgi.DRYDEP.m3prof\_saprc99\_ae5\_20180615
CCTM\_m3prof\_saprc99\_ae5\_Linux2\_x86\_64pgi.WETDEP1.m3prof\_saprc99\_ae5\_20180615,
but domain 2 output files were generated
CCTM\_m3conc\_saprc99\_ae5\_Linux2\_x86\_64pgi.CONC.m3conc\_saprc99\_ae5\_20180615
CCTM\_m3conc\_saprc99\_ae5\_Linux2\_x86\_64pgi.DRYDEP.m3conc\_saprc99\_ae5\_20180615
CCTM\_m3conc\_saprc99\_ae5\_Linux2\_x86\_64pgi.WETDEP1.m3conc\_saprc99\_ae5\_20180615.
---
### Author:  [@cgnolte](https://forum.cmascenter.org/u/cgnolte)
#### Post date: [July 2, 2020, 2:02pm UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/11 "2020-07-02T14:02:49Z")
Your dust emissions files DUST\_LU\_1 and DUST\_LU\_2 are from an entirely different grid. Try turning off windblown dust in your run script.
Your total gas phase concentrations seem already quite high after your first call to VDIFF. Check the units of your emissions files.
```
after VDIFF G 2.3666389E+00 A 7.7070502E+08 N 6.5169435E-05
```
Something is going haywire with gas-phase species in horizontal diffusion. The checksum of total gas-phase concentrations goes up by 11 orders of magnitude. I have never seen that before, usually the change due to that process is negligible. Note that the change in total aerosol and nonreactives is negligible.
```
after ADV G 2.0968480E+04 A 9.3995800E+12 N 6.6565633E-01
H-eddy DT & integration steps: 4.5000000E+02 1
after HDIFF G 6.0218614E+15 A 9.3995810E+12 N 6.6565639E-01
```
If turning off windblown dust does not solve the problem, I would examine the meteorological data for anomalies. You might try recompiling the model in debug mode (with array bounds checking turned on, floating point traps, etc.). The model may crash with a stack trace that will give you a clue as to what variable is the problem.
---
### Author:  [@ddmmssddoo](https://forum.cmascenter.org/u/ddmmssddoo)
#### Post date: [July 3, 2020, 3:17am UTC](https://forum.cmascenter.org/t/cctm-running-error-in-cmaqv5-0-2/1609/12 "2020-07-03T03:17:00Z")
Thank u!! I’ll give it a try.