# Compile error in icon **URL:** \ **Category:** CMAQ\ **Tags:** cmaq\ **Created:** [April 10, 2024, 12:23pm UTC](https://forum.cmascenter.org/t/compile-error-in-icon/4852 "2024-04-10T12:23:35Z")\ **Posts on this page:** 7\ **Page:** 1
**Author:** ![Sunchanglei](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.cmascenter.org/sunchanglei/32/4358_2.png) [@Sunchanglei](https://forum.cmascenter.org/u/Sunchanglei)\ **Post date:** [April 10, 2024, 12:23pm UTC](https://forum.cmascenter.org/t/compile-error-in-icon/4852/1 "2024-04-10T12:23:35Z")
Hello everyone, I’m trying to compile CMAQ-5.2. But error occurs while compiling the ICON process. So i need your help！Thanks! Compiler is set to intel set ICON\_SRC = /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src setenv REPOROOT /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src set Mechs = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS set VRSN = v52 set INPT = profile set EXEC = ICON\_v52\_profile.exe set CFG = ICON\_v52\_profile.cfg set CompileBLDMAKE set CopySrc set ModCommon = common set ModType = profile set ModMech = prof\_data/cb05\_ae6\_aq set Mechanism = cb05e51\_ae6\_aq/ set Tracer = trac0 set FC = mpiifort set FP = mpiifort setenv BLDER /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe set xLib\_Base = /opt/ifort set xLib\_1 = ioapi31/Linux2\_x86\_64ifort set xLib\_2 = ioapi31/ioapi/fixed\_src set xLib\_4 = ioapi31/Linux2\_x86\_64ifort set FSTD = -O3 -fno-alias -mp1 -fp-model source set DBG = -O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback set F\_FLAGS = -fixed -132 set F90\_FLAGS = -free set CPP\_FLAGS = set LINK\_FLAGS = set LIB1 = -lioapi set LIB2 = -lnetcdf if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2 || ! -e /opt/ifort ) then echo Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2 Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2 echo library path: /opt/ifort library path: /opt/ifort if ( 0 ) then set BLD\_OS = `uname -s` uname -s if ( Linux != Linux ) then set Bld = /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel ) then mkdir /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel else cd /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel if ( 1 ) then /bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51\_ae6\_aq//AE\_cb05e51\_ae6\_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51\_ae6\_aq//GC\_cb05e51\_ae6\_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51\_ae6\_aq//NR\_cb05e51\_ae6\_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel /bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/trac0/Species\_Table\_TR\_0.nml /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel else set Cfile = ICON\_v52\_profile.cfg.bld set quote = " echo echo model ICON\_v52\_profile.exe; echo echo repo /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src; echo echo mechanism cb05e51\_ae6\_aq/; echo echo lib\_base /opt/ifort; echo echo lib\_1 ioapi31/Linux2\_x86\_64ifort; echo echo lib\_2 ioapi31/ioapi/fixed\_src; echo echo lib\_4 ioapi31/Linux2\_x86\_64ifort; echo set text = “”; echo cpp\_flags “”; echo echo f\_compiler mpiifort; echo echo fstd “-O3 -fno-alias -mp1 -fp-model source”; echo echo dbg “-O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback”; echo echo f\_flags “-fixed -132”; echo echo f90\_flags “-free”; echo echo link\_flags “”; echo echo ioapi “-lioapi”; echo echo netcdf "-lnetcdf "; echo set text=// mechanism: echo // mechanism: cb05e51\_ae6\_aq/ echo // project repository: /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src echo set text = common echo // required common echo Module common; echo set text = profile, m3conc, tracer echo // options are profile, m3conc, tracer echo Module profile; echo set text = cb05, saprc99, saprc07t echo // options are cb05, saprc99, saprc07t echo Module prof\_data/cb05\_ae6\_aq; echo if ( 0 ) then unalias mv rm if ( 1 || ! -f /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe ) then cd /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/scripts ./bldit\_bldmake.csh rm: No match. mpiifort: Command not found. mpiifort: Command not found. mpiifort: Command not found. mpiifort: Command not found. mpiifort: No match. _ **ERROR** _ BLDMAKE Compile failed endif set Blder = /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe -serial -verbose cd /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel if ( 0 ) then if ( 1 ) then /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe -serial -verbose ICON\_v52\_profile.cfg.bld /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe: Command not found. else endif mv Makefile Makefile.intel mv: cannot stat `Makefile’: No such file or directory if ( 1 != 0 ) then echo \*\*\* failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe -serial -verbose \*\*\* \*\*\* failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe -serial -verbose \*\*\* exit 1 ---
**Author:** ![Ryan](https://avatars.discourse-cdn.com/v4/letter/r/a8b319/32.png) [@Ryan](https://forum.cmascenter.org/u/Ryan)\ **Post date:** [April 11, 2024, 6:40pm UTC](https://forum.cmascenter.org/t/compile-error-in-icon/4852/3 "2024-04-11T18:40:57Z")
> [@Sunchanglei](#): > > mpiifort: Command not found. > mpiifort: Command not found. > mpiifort: Command not found. > mpiifort: Command not found. > mpiifort: No match. You can run command “which mpiifort” to check if mpiifort is available in your workstation. From the error message, it indicates that mpiifort is not available in your system. ---
**Author:** ![lizadams](https://avatars.discourse-cdn.com/v4/letter/l/49beb7/32.png) [@lizadams](https://forum.cmascenter.org/u/lizadams)\ **Post date:** [April 12, 2024, 5:30pm UTC](https://forum.cmascenter.org/t/compile-error-in-icon/4852/4 "2024-04-12T17:30:33Z")
Your system may be using mpifort rather than mpiifort. Please verify the command, and then edit the script to use the correct one. ---
**Author:** ![Sunchanglei](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.cmascenter.org/sunchanglei/32/4358_2.png) [@Sunchanglei](https://forum.cmascenter.org/u/Sunchanglei)\ **Post date:** [April 15, 2024, 7:17am UTC](https://forum.cmascenter.org/t/compile-error-in-icon/4852/5 "2024-04-15T07:17:52Z")
Thank you. I just confirmed that there is mpifort in our server, but there is no mpiifort. I want to install CMAQ using an intel compiler. Do I need to download Intel mpi? Or how to solve it? Looking forward to your reply! ---
**Author:** ![Sunchanglei](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.cmascenter.org/sunchanglei/32/4358_2.png) [@Sunchanglei](https://forum.cmascenter.org/u/Sunchanglei)\ **Post date:** [April 18, 2024, 12:22pm UTC](https://forum.cmascenter.org/t/compile-error-in-icon/4852/6 "2024-04-18T12:22:33Z")
Hello, teachers. I have solved the problem with mpiifort, but it still doesn’t compile. Can you tell me what are the reasons for the following questions? Compiler is set to intel set ICON\_SRC = /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src setenv REPOROOT /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src set Mechs = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS set VRSN = v52 set INPT = profile set EXEC = ICON\_v52\_profile.exe set CFG = ICON\_v52\_profile.cfg set CompileBLDMAKE set CopySrc set ModCommon = common set ModType = profile set ModMech = prof\_data/cb05\_ae6\_aq set Mechanism = cb05e51\_ae6\_aq/ set Tracer = trac0 set FC = mpiifort set FP = mpiifort setenv BLDER /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe set xLib\_Base = /disk1/scl/CMAQ/CMAQ-5.2/lib set xLib\_1 = ioapi/Linux2\_x86\_64ifort set xLib\_2 = ioapi/ioapi/fixed\_src set xLib\_4 = ioapi/Linux2\_x86\_64ifort set FSTD = -O3 -fno-alias -mp1 -fp-model source set DBG = -O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback set F\_FLAGS = -fixed -132 set F90\_FLAGS = -free set CPP\_FLAGS = set LINK\_FLAGS = set LIB1 = -lioapi set LIB2 = -lnetcdff -lnetcdf if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2 || ! -e /disk1/scl/CMAQ/CMAQ-5.2/lib ) then echo Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2 Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2 echo library path: /disk1/scl/CMAQ/CMAQ-5.2/lib library path: /disk1/scl/CMAQ/CMAQ-5.2/lib if ( 0 ) then set BLD\_OS = `uname -s` uname -s if ( Linux != Linux ) then set Bld = /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel ) then if ( ! -d /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel ) then endif cd /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel if ( 1 ) then /bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51\_ae6\_aq//AE\_cb05e51\_ae6\_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51\_ae6\_aq//GC\_cb05e51\_ae6\_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51\_ae6\_aq//NR\_cb05e51\_ae6\_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel /bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/trac0/Species\_Table\_TR\_0.nml /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel else set Cfile = ICON\_v52\_profile.cfg.bld set quote = " echo echo model ICON\_v52\_profile.exe; echo echo repo /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src; echo echo mechanism cb05e51\_ae6\_aq/; echo echo lib\_base /disk1/scl/CMAQ/CMAQ-5.2/lib; echo echo lib\_1 ioapi/Linux2\_x86\_64ifort; echo echo lib\_2 ioapi/ioapi/fixed\_src; echo echo lib\_4 ioapi/Linux2\_x86\_64ifort; echo set text = “”; echo cpp\_flags “”; echo echo f\_compiler mpiifort; echo echo fstd “-O3 -fno-alias -mp1 -fp-model source”; echo echo dbg “-O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback”; echo echo f\_flags “-fixed -132”; echo echo f90\_flags “-free”; echo echo link\_flags “”; echo echo ioapi “-lioapi”; echo echo netcdf "-lnetcdff -lnetcdf "; echo set text=// mechanism: echo // mechanism: cb05e51\_ae6\_aq/ echo // project repository: /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src echo set text = common echo // required common echo Module common; echo set text = profile, m3conc, tracer echo // options are profile, m3conc, tracer echo Module profile; echo set text = cb05, saprc99, saprc07t echo // options are cb05, saprc99, saprc07t echo Module prof\_data/cb05\_ae6\_aq; echo if ( 0 ) then unalias mv rm if ( 1 || ! -f /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe ) then cd /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/scripts ./bldit\_bldmake.csh endif set Blder = /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe -serial -verbose cd /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD\_ICON\_v52\_profile\_intel if ( 0 ) then if ( 1 ) then /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe -serial -verbose ICON\_v52\_profile.cfg.bld REPOROOT set to:/disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src Model set to ICON\_v52\_profile.exe Repository set to /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src Mechanism set to cb05e51\_ae6\_aq/ LIB\_BASE set to /disk1/scl/CMAQ/CMAQ-5.2/lib LIB\_1 set to ioapi/Linux2\_x86\_64ifort LIB\_2 set to ioapi/ioapi/fixed\_src LIB\_4 set to ioapi/Linux2\_x86\_64ifort CPP\_FLAGS set to F\_COMPILER set to mpiifort FSTD set to -O3 -fno-alias -mp1 -fp-model source DBG set to -O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback f\_flags set to -fixed -132 f90\_flags set to -free LINK\_FLAGS set to IOAPI set to -lioapi NETCDF set to -lnetcdff -lnetcdf Building file list for module common file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/CGRID\_SPCS.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/findex.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/gc\_spc\_map.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/get\_envlist.f added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/HGRD\_DEFN.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/icon.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/IC\_PARMS.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/lat\_lon.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/lr\_interp.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/lst\_spc\_map.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/ngc\_spc\_map.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/opn\_ic\_file.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/setup\_logdev.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/subhdomain.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/UTILIO\_DEFN.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/VGRD\_DEFN.F added to make list Building file list for module profile file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/profile/prof\_driver.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/profile/prof\_icout.F added to make list file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/profile/prof\_vinterp.F added to make list Building file list for module prof\_data/cb05\_ae6\_aq file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/prof\_data/cb05\_ae6\_aq/ic\_profile\_CB05.dat added to make list Determining global module files file CGRID\_SPCS.F determined to be global file HGRD\_DEFN.F determined to be global file IC\_PARMS.F determined to be global file UTILIO\_DEFN.F determined to be global file VGRD\_DEFN.F determined to be global \*\*\* Program terminated on Error \*\*\* ``` Cannot create FILE [Makefile] ``` else endif mv Makefile Makefile.intel mv: accessing `Makefile.intel’: Too many levels of symbolic links if ( 1 != 0 ) then echo \*\*\* failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe -serial -verbose \*\*\* \*\*\* failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake\_intel.exe -serial -verbose \*\*\* exit 1 ---
**Author:** ![cjcoats](https://avatars.discourse-cdn.com/v4/letter/c/ac8455/32.png) [@cjcoats](https://forum.cmascenter.org/u/cjcoats)\ **Post date:** [April 18, 2024, 12:25pm UTC](https://forum.cmascenter.org/t/compile-error-in-icon/4852/7 "2024-04-18T12:25:30Z")
The obvious thing is to check permissions, e.g., on the directory for _Makefile_, or whether there already exists a _Makefile_ for which you do not have WRITE permissions… ---
**Author:** ![Sunchanglei](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.cmascenter.org/sunchanglei/32/4358_2.png) [@Sunchanglei](https://forum.cmascenter.org/u/Sunchanglei)\ **Post date:** [April 23, 2024, 10:22am UTC](https://forum.cmascenter.org/t/compile-error-in-icon/4852/8 "2024-04-23T10:22:27Z")
Thank you for your reply. I tried to change the permissions with chomd, but still couldn’t. The permission of the folder scl (the account given by my teacher) where CMAQ is located is drwxr-xr-x, Can I create makefile with this permission?