# Error in running CMAQv5.0.2 **URL:** \ **Category:** CMAQ\ **Created:** [December 15, 2019, 6:25pm UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184 "2019-12-15T18:25:24Z")\ **Posts on this page:** 9\ **Page:** 1
**Author:** ![Catalyst2682](https://avatars.discourse-cdn.com/v4/letter/c/a6a055/32.png) [@Catalyst2682](https://forum.cmascenter.org/u/Catalyst2682)\ **Post date:** [December 15, 2019, 6:25pm UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/1 "2019-12-15T18:25:24Z")
Dear all, I got this error while running CCTM. Attached are two of the full log files. [CTM\_LOG\_001.36km\_2018001.txt](https://forum.cmascenter.org/uploads/short-url/5NU4BGEwDIPwYXXJIF2mgHN54T.txt) (43.3 KB) File “CSQY\_DATA” opened for input on unit: 94 /home/catalyst/Desktop/Build\_WRF/CMAQv5.0.1/scripts/cctm/BLD\_saprc99\_ae6\_aq/CSQY\_DATA\_saprc99\_ae6\_aq Sucessfully Loaded JTABLE ``` >>--->> WARNING in subroutine PHOT:INTERPX Variable "LUFRAC_21" not in file GRID_CRO_2D M3WARN: DTBUF 0:00:00 Jan. 31, 2018 (2018031:000000) *** ERROR ABORT in subroutine PHOT on PE 004 Could not read LUFRAC_21 from GRID_CRO_2D ``` PM3EXIT: DTBUF 0:00:00 Jan. 31, 2018 Date and time 0:00:00 Jan. 31, 2018 (2018031:000000) AND Aerosol Emissions Processing in Vertical diffusion … — Aero Species Mapped — — PM Emis Species Mapped — — Precursor Species Mapped — Value for CTM\_SSEMDIAG not defined;returning default: FALSE Flag for writing the sea-salt-emission diagnostic file Environment variable not set … Using default: 0 Value for CTM\_WB\_DUST: N returning FALSE === aerospc em\_map 1 2 ASO4J 1 2 2 ANO3J 4 3 2 ACLJ 34 4 2 ANH4J 3 5 2 ANAJ 32 6 2 AMGJ 19 7 2 AKJ 20 8 2 ACAJ 18 9 1 APOCI 7 9 2 APOCJ 6 10 1 APNCOMI 9 10 2 APNCOMJ 8 11 1 AECI 11 11 2 AECJ 10 12 2 AFEJ 14 13 2 AALJ 15 14 2 ASIJ 16 15 2 ATIJ 17 16 2 AMNJ 21 17 2 AH2OJ 30 18 2 AOTHRJ 12 39 3 ACORS 22 modified aerospc em\_fac Value for CTM\_PT3DEMIS: N returning FALSE # ====================================================================== — Subroutine: M3DRY — Found canopy wetness (WR) in MET\_CRO\_2D # ====================================================================== — Subroutine: M3DRY — Found 2-m water vapor mixing ratio (Q2) in MET\_CRO\_2D ``` >>--->> WARNING in subroutine GET_EMIS:INTERPX Variable "HONO" not in file EMIS_1 M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600) >>--->> WARNING in subroutine GET_EMIS on PE 000 Could not read HONO from EMIS_1 M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600) >>--->> WARNING in subroutine GET_EMIS:INTERPX Variable "ARO1NBZ" not in file EMIS_1 M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600) >>--->> WARNING in subroutine GET_EMIS on PE 000 Could not read ARO1NBZ from EMIS_1 M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600) >>--->> WARNING in subroutine GET_EMIS:INTERPX Variable "BENZENE" not in file EMIS_1 M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600) >>--->> WARNING in subroutine GET_EMIS on PE 000 Could not read BENZENE from EMIS_1 M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600) >>--->> WARNING in subroutine GET_SSEMIS:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600) >>--->> WARNING in subroutine GET_SSEMIS on PE 000 Could not interpolate SURF from OCEAN_1 . Surf-zone emissions set to zero. M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600) Value for KZMIN: Y returning TRUE Maximum eddy diffusivity of: 247.62 (m**2/sec) at col, row, layer: 1, 30, 5 corresponding to a free tropospheric wind shear of: 1.41661E-03 (/sec), a bulk Richardson Number of: -154.51 , and pot. temps. in layer and layer+1: 290.75 290.02 ``` after VDIFF G 1.2116558E-01 A 1.2153504E+09 N 1.2268167E-04 after COUPLE\_WR G 9.3365820E+02 A 1.0044680E+13 N 9.6260780E-01 ``` No BC's in file BNDY_GASC_1 for the following adv species: Set to 1.00E-30 MEOH PROD2 RCO_OOH RCO_OH PBZN MA_PAN ACET NPHE PHEN RCHO BACL BALD ISOPROD DCB1 DCB3 TRP1 SESQ No BC's in file BNDY_AERO_1 for the following adv species: Set to 1.00E-30 ANH4J ANH4I ANO3J ANO3I AORGCJ APOCJ APOCI APNCOMJ APNCOMI AECJ AECI AOTHRJ AOTHRI AFEJ AALJ ASIJ ATIJ ACAJ AMGJ AKJ AMNJ AH2OJ AH2OI ANAJ ANAI ACLJ ACLI ASEACAT ACLK ASO4K ANH4K ANO3K AH2OK No BC's in file BNDY_NONR_1 for the following adv species: Set to 1.00E-30 HCL Reading U-windfield from MET_DOT_3D for variable: UWINDC Reading V-windfield from MET_DOT_3D for variable: VWINDC layer S (X3FACE_GD) Delta S 1 0.0100000 0.0100000 1.0000000 2 0.0200000 0.0100000 1.0000000 3 0.0300000 0.0100000 1.0000000 4 0.0400000 0.0100001 1.0000000 5 0.0500000 0.0100000 1.0000000 6 0.0600000 0.0100000 1.0000000 7 0.0700000 0.0100000 1.0000000 8 0.0900000 0.0200000 1.0000000 9 0.1100000 0.0200000 1.0000000 10 0.1300000 0.0200000 1.0000000 11 0.1500000 0.0200000 1.0000000 12 0.2250000 0.0750000 1.0000000 13 0.3100000 0.0850000 1.0000000 14 0.4000000 0.0900000 1.0000000 15 0.5250000 0.1250000 1.0000000 16 0.7100000 0.1850001 1.0000000 17 0.9100000 0.1999999 1.0000000 18 1.0000000 0.0900000 1.0000000 ``` after ADV G 9.3362909E+02 A 1.0066116E+13 N 9.6747971E-01 ``` H-eddy DT & integration steps: 7.2000000E+02 1 ``` after HDIFF G 9.3362909E+02 A 1.0066116E+13 N 9.6747959E-01 after DECOUPLE\_ G 1.2118143E-01 A 1.2175133E+09 N 1.2341718E-04 Value for CLD\_DIAG: N returning FALSE CTM\_WET\_DEP\_1 :/home/catalyst/Desktop/Build\_WRF/CMAQv5.0.2/scripts/cctm/cctm\_36km/CCTM\_saprc99\_ae6\_aq\_Linux4\_x86\_64gcc.WETDEP1.36km\_2018031 ``` >>--->> WARNING in subroutine OPEN3 File not available. Could not open CTM_WET_DEP_1 file for update - try to open new "CTM_WET_DEP_1" opened as NEW(READ-WRITE ) File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.WETDEP1.36km_2018031" File type GRDDED3 Execution ID "CCTM_saprc99_ae6_aq_Linux4_x86_64gcc" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 118 vbles NetCDF ID: 1376256 opened as VOLATILE READWRITE Starting date and time 2018031:010000 (1:00:00 Jan. 31, 2018) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 no surrogates for aqueous species CO2...using background value of 340.0000 --- AQCHEM Gas and Aerosol Species Mapped --- ``` application called MPI\_Abort(MPI\_COMM\_WORLD, 0) - process 6 0.0u 0.0s 0:03.41 0.2% 0+0k 0+0io 0pf+0w mkdir -p /home/catalyst/Desktop/Build\_WRF/CMAQv5.0.2/scripts/cctm/cctm\_36km/logs/2018031 mv ./CTM\_LOG\_001.36km\_2018031 ./CTM\_LOG\_002.36km\_2018031 ./CTM\_LOG\_003.36km\_2018031 ./CTM\_LOG\_004.36km\_2018031 ./CTM\_LOG\_005.36km\_2018031 ./CTM\_LOG\_006.36km\_2018031 ./CTM\_LOG\_007.36km\_2018031 /home/catalyst/Desktop/Build\_WRF/CMAQv5.0.2/scripts/cctm/cctm\_36km/logs/2018031 @ i = 30 + 1 end while ( 31 \< 31 ) date Mon Dec 16 00:24:06 CST 2019 exit Your help would be really appreciated as usual. Thanks Catalyst[CTM\_LOG\_004.36km\_2018031.txt](https://forum.cmascenter.org/uploads/short-url/fOO6iXZphIy90cBtzeGKT6wZ6kh.txt) (47.9 KB) ---
**Author:** ![lizadams](https://avatars.discourse-cdn.com/v4/letter/l/49beb7/32.png) [@lizadams](https://forum.cmascenter.org/u/lizadams)\ **Post date:** [December 16, 2019, 2:53pm UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/2 "2019-12-16T14:53:19Z")
I used the grep command to find the ERROR message in your log. grep -B 4 ERROR CTM\_LOG\_004.36km\_2018031.txt Variable “LUFRAC\_21” not in file GRID\_CRO\_2D M3WARN: DTBUF 0:00:00 Jan. 31, 2018 (2018031:000000) ``` *** ERROR ABORT in subroutine PHOT on PE 004 ``` ---
**Author:** ![Catalyst2682](https://avatars.discourse-cdn.com/v4/letter/c/a6a055/32.png) [@Catalyst2682](https://forum.cmascenter.org/u/Catalyst2682)\ **Post date:** [December 16, 2019, 4:58pm UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/3 "2019-12-16T16:58:41Z")
Dear @lizadams, Thanks for your response. But I used land mass of 20 categories, so I don’t know where that error originated from. Also, what about this: **H-eddy DT & integration steps: 6.0000000E+02 1** \*\* after HDIFF G 1.0887087E+03 A 1.0406610E+13 N 9.0558481E-01\*\* \*\* after DECOUPLE\_ G 1.2091564E-01 A 1.2022198E+09 N 1.0072426E-04\*\* \*\* Value for CLD\_DIAG not defined;returning default: FALSE\*\* \*\* Output cloud diagnostic files? (Y/N) \*\* \*\* Environment variable not set … Using default: F\*\* \*\* no surrogates for aqueous species CO2…using background value of 340.0000\*\* because it’s also found in the log files? Thanks and regards, Catalyst ---
**Author:** ![Catalyst2682](https://avatars.discourse-cdn.com/v4/letter/c/a6a055/32.png) [@Catalyst2682](https://forum.cmascenter.org/u/Catalyst2682)\ **Post date:** [December 23, 2019, 6:58am UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/4 "2019-12-23T06:58:17Z")
Dear @lizadams, I’ve solved this problem. Thanks so much and best regards. Catalyst ---
**Author:** ![Tris](https://yyz1.discourse-cdn.com/flex027/user_avatar/forum.cmascenter.org/tris/32/1810_2.png) [@Tris](https://forum.cmascenter.org/u/Tris)\ **Post date:** [April 25, 2020, 12:14am UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/5 "2020-04-25T00:14:44Z")
Dear Catalyst, I’ve ran into the same problem you had: Variable “LUFRAC\_21” not in file GRID\_CRO\_2D How did you solve this? Thanks! ---
**Author:** ![Catalyst2682](https://avatars.discourse-cdn.com/v4/letter/c/a6a055/32.png) [@Catalyst2682](https://forum.cmascenter.org/u/Catalyst2682)\ **Post date:** [April 25, 2020, 8:36am UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/6 "2020-04-25T08:36:42Z")
Dear @Tris, Firstly, what version of WRF are you using? Secondly, what version of MCIP did you use to process the WRF output? Catalyst ---
**Author:** ![Jincheol90](https://avatars.discourse-cdn.com/v4/letter/j/f475e1/32.png) [@Jincheol90](https://forum.cmascenter.org/u/Jincheol90)\ **Post date:** [April 26, 2022, 9:27pm UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/7 "2022-04-26T21:27:06Z")
Dear @Catalyst2682, @Tris Hello, I’m having a similar issue and wondering how you’ve resolved this. I tried MCIP 4.2 and 4.3 using WRF3.8 outputs, and CCTM asks for LUFRAC\_21 which my MCIP output doesn’t have. Thank you, Jin ---
**Author:** ![tlspero](https://avatars.discourse-cdn.com/v4/letter/t/bb73d2/32.png) [@tlspero](https://forum.cmascenter.org/u/tlspero)\ **Post date:** [May 9, 2022, 12:15pm UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/8 "2022-05-09T12:15:29Z")
@Jincheol90 – What land use are you using in WRF? –Tanya ---
**Author:** ![Jincheol90](https://avatars.discourse-cdn.com/v4/letter/j/f475e1/32.png) [@Jincheol90](https://forum.cmascenter.org/u/Jincheol90)\ **Post date:** [May 10, 2022, 6:23pm UTC](https://forum.cmascenter.org/t/error-in-running-cmaqv5-0-2/1184/9 "2022-05-10T18:23:14Z")
Dear Dr. Spero, Thank you for the reply. I’m using MODIFIED\_IGBP\_MODIS, and the attached are my namelists for WPS and WRF where I used 20 land use categories. I’ve never had this issue when I was using CMAQ5.2 and 5.3.2, but it doesn’t work for 5.0.2. [namelist.input.txt](https://forum.cmascenter.org/uploads/short-url/gf6d5vIbVLbkI6dVG0iaCfv5WdS.txt) (6.4 KB) [namelist.wps.txt](https://forum.cmascenter.org/uploads/short-url/l9XB6Junpa1aDJF133GCt7sBxKh.txt) (1.0 KB) Sincerely, Jin