This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Nov 12 2019 08:43:28 $ EXECUTION_ID: CCTM_saprc99_ae6_aq_Linux4_x86_64gcc Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 98 /home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/GRIDDESC_36km Value for NPCOL_NPROW: '4 2' Value for NPCOL_NPROW: '4 2' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/mcip/36km/METCRO3D_2018-01-01" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 18 lays, 17 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2018001:000000 (0:00:00 Jan. 1, 2018) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 25 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/BLD_saprc99_ae6_aq/GC_saprc99_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/BLD_saprc99_ae6_aq/AE_saprc99_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/BLD_saprc99_ae6_aq/NR_saprc99_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/BLD_saprc99_ae6_aq/Species_Table_TR_0.nml Value for CONC_SPCS not defined; returning defaultval ': 'VARLIST' Value for CONC_SPCS not defined; returning defaultval ': 'VARLIST' >>--->> WARNING in subroutine GET_ENVLIST Environment variable CONC_SPCS not set Value for CONC_BLEV_ELEV: '1,18' Value for CONC_BLEV_ELEV: '1,18' Value for AVG_CONC_SPCS not defined; returning defaultval ': 'VARLIST' Value for AVG_CONC_SPCS not defined; returning defaultval ': 'VARLIST' >>--->> WARNING in subroutine GET_ENVLIST Environment variable AVG_CONC_SPCS not set Value for ACONC_BLEV_ELEV: '1,1' Value for ACONC_BLEV_ELEV: '1,1' Value for CTM_WVEL: N returning FALSE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_saprc99_ae6' Value for CTM_PROGNAME: 'CCTM_saprc99_ae6' Value for CTM_STDATE: 2018001 Value for CTM_STTIME: 0 Value for CTM_RUNLEN: 240000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/mcip/36km/GRIDCRO2D_2018-01-01" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 27 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/icon/icon/ICON_saprc99_ae6_aq_36km_profile" File type GRDDED3 Execution ID "ICON_saprc99_ae6_aq_Linux4_x86_64gcc.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 85 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O3P in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 5 N2O5 1.0000 6 HNO3 1.0000 No IC found for species O1D2 in INIT_GASC_1; set to 1.00E-30 7 HO 1.0000 8 HONO 1.0000 9 HO2 1.0000 10 CO 1.0000 11 HNO4 1.0000 12 HO2H 1.0000 13 SO2 1.0000 14 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species C_O2 in INIT_GASC_1; set to 1.00E-30 15 HCHO 1.0000 16 COOH 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species RO2_R in INIT_GASC_1; set to 1.00E-30 17 ROOH 1.0000 No IC found for species R2O2 in INIT_GASC_1; set to 1.00E-30 No IC found for species RO2_N in INIT_GASC_1; set to 1.00E-30 18 RNO3 1.0000 19 MEK 1.0000 No IC found for species PROD2 in INIT_GASC_1; set to 1.00E-30 20 CCO_O2 1.0000 21 PAN 1.0000 22 CCO_OOH 1.0000 23 CCO_OH 1.0000 No IC found for species RCO_O2 in INIT_GASC_1; set to 1.00E-30 24 PAN2 1.0000 25 CCHO 1.0000 No IC found for species RCO_OOH in INIT_GASC_1; set to 1.00E-30 No IC found for species RCO_OH in INIT_GASC_1; set to 1.00E-30 No IC found for species BZCO_O2 in INIT_GASC_1; set to 1.00E-30 No IC found for species PBZN in INIT_GASC_1; set to 1.00E-30 No IC found for species BZ_O in INIT_GASC_1; set to 1.00E-30 No IC found for species MA_RCO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species MA_PAN in INIT_GASC_1; set to 1.00E-30 No IC found for species TBU_O in INIT_GASC_1; set to 1.00E-30 No IC found for species ACET in INIT_GASC_1; set to 1.00E-30 No IC found for species NPHE in INIT_GASC_1; set to 1.00E-30 No IC found for species PHEN in INIT_GASC_1; set to 1.00E-30 No IC found for species BZNO2_O in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCOO in INIT_GASC_1; set to 1.00E-30 26 HCOOH 1.0000 No IC found for species RCHO in INIT_GASC_1; set to 1.00E-30 27 GLY 1.0000 28 MGLY 1.0000 No IC found for species BACL in INIT_GASC_1; set to 1.00E-30 29 CRES 1.0000 No IC found for species BALD in INIT_GASC_1; set to 1.00E-30 30 METHACRO 1.0000 31 MVK 1.0000 No IC found for species ISOPROD in INIT_GASC_1; set to 1.00E-30 No IC found for species DCB1 in INIT_GASC_1; set to 1.00E-30 32 DCB2 1.0000 No IC found for species DCB3 in INIT_GASC_1; set to 1.00E-30 33 ETHENE 1.0000 34 ISOPRENE 1.0000 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TRP1 in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 35 ALK1 1.0000 36 ALK2 1.0000 37 ALK3 1.0000 38 ALK4 1.0000 39 ALK5 1.0000 No IC found for species ALK5RXN in INIT_GASC_1; set to 1.00E-30 40 ARO1 1.0000 No IC found for species ARO1RO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 41 ARO2 1.0000 No IC found for species ARO2RO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 42 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 43 OLE1 1.0000 44 OLE2 1.0000 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/icon/icon/ICON_saprc99_ae6_aq_36km_profile" File type GRDDED3 Execution ID "ICON_saprc99_ae6_aq_Linux4_x86_64gcc.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 85 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 45 ASO4J 1.0000 46 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 47 AALKJ 1.0000 48 AXYL1J 1.0000 49 AXYL2J 1.0000 50 AXYL3J 1.0000 51 ATOL1J 1.0000 52 ATOL2J 1.0000 53 ATOL3J 1.0000 54 ABNZ1J 1.0000 55 ABNZ2J 1.0000 56 ABNZ3J 1.0000 57 ATRP1J 1.0000 58 ATRP2J 1.0000 59 AISO1J 1.0000 60 AISO2J 1.0000 61 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; set to 1.00E-30 No IC found for species APNCOMJ in INIT_AERO_1; set to 1.00E-30 No IC found for species APNCOMI in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 62 ACORS 1.0000 63 ASOIL 1.0000 64 NUMATKN 1.0000 65 NUMACC 1.0000 66 NUMCOR 1.0000 67 SRFATKN 1.0000 68 SRFACC 1.0000 69 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 70 AISO3J 1.0000 71 AOLGAJ 1.0000 72 AOLGBJ 1.0000 AE loaded into CGRID "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/icon/icon/ICON_saprc99_ae6_aq_36km_profile" File type GRDDED3 Execution ID "ICON_saprc99_ae6_aq_Linux4_x86_64gcc.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 85 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 73 NH3 1.0000 No IC found for species HCL in INIT_NONR_1; set to 1.00E-30 74 SV_ALK 1.0000 75 SV_XYL1 1.0000 76 SV_XYL2 1.0000 77 SV_TOL1 1.0000 78 SV_TOL2 1.0000 79 SV_BNZ1 1.0000 80 SV_BNZ2 1.0000 81 SV_TRP1 1.0000 82 SV_TRP2 1.0000 83 SV_ISO1 1.0000 84 SV_ISO2 1.0000 85 SV_SQT 1.0000 NR loaded into CGRID CTM_CONC_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.CONC.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. Could not open CTM_CONC_1 for update - try to open new Conc File Header Description: => Concentration file output => From CMAQ model dyn alloc version CTM => Set of variables (possibly) reduced from CGRID => For next scenario continuation runs, => use the "one-step" CGRID file => Layer 1 to 1 => Layer 2 to 2 => Layer 3 to 3 => Layer 4 to 4 => Layer 5 to 5 => Layer 6 to 6 => Layer 7 to 7 => Layer 8 to 8 => Layer 9 to 9 => Layer 10 to 10 => Layer 11 to 11 => Layer 12 to 12 => Layer 13 to 13 => Layer 14 to 14 => Layer 15 to 15 => Layer 16 to 16 => Layer 17 to 17 => Layer 18 to 18 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O3P 4 ( 4) O3 5 ( 5) NO3 6 ( 6) N2O5 7 ( 7) HNO3 8 ( 8) O1D2 9 ( 9) HO 10 ( 10) HONO 11 ( 11) HO2 12 ( 12) CO 13 ( 13) HNO4 14 ( 14) HO2H 15 ( 15) SO2 16 ( 16) SULF 17 ( 17) C_O2 18 ( 18) HCHO 19 ( 19) COOH 20 ( 20) MEOH 21 ( 21) RO2_R 22 ( 22) ROOH 23 ( 23) R2O2 24 ( 24) RO2_N 25 ( 25) RNO3 26 ( 26) MEK 27 ( 27) PROD2 28 ( 28) CCO_O2 29 ( 29) PAN 30 ( 30) CCO_OOH 31 ( 31) CCO_OH 32 ( 32) RCO_O2 33 ( 33) PAN2 34 ( 34) CCHO 35 ( 35) RCO_OOH 36 ( 36) RCO_OH 37 ( 37) BZCO_O2 38 ( 38) PBZN 39 ( 39) BZ_O 40 ( 40) MA_RCO3 41 ( 41) MA_PAN 42 ( 42) TBU_O 43 ( 43) ACET 44 ( 44) NPHE 45 ( 45) PHEN 46 ( 46) BZNO2_O 47 ( 47) HOCOO 48 ( 48) HCOOH 49 ( 49) RCHO 50 ( 50) GLY 51 ( 51) MGLY 52 ( 52) BACL 53 ( 53) CRES 54 ( 54) BALD 55 ( 55) METHACRO 56 ( 56) MVK 57 ( 57) ISOPROD 58 ( 58) DCB1 59 ( 59) DCB2 60 ( 60) DCB3 61 ( 61) ETHENE 62 ( 62) ISOPRENE 63 ( 63) TRP1 64 ( 64) ALK1 65 ( 65) ALK2 66 ( 66) ALK3 67 ( 67) ALK4 68 ( 68) ALK5 69 ( 69) ARO1 70 ( 70) ARO1RO2 71 ( 71) ARO2 72 ( 72) ARO2RO2 73 ( 73) BENZENE 74 ( 74) BENZRO2 75 ( 75) OLE1 76 ( 76) OLE2 77 ( 77) SESQ Aerosol species saved to CONC file: 1 ( 78) ASO4J 2 ( 79) ASO4I 3 ( 80) ANH4J 4 ( 81) ANH4I 5 ( 82) ANO3J 6 ( 83) ANO3I 7 ( 84) AALKJ 8 ( 85) AXYL1J 9 ( 86) AXYL2J 10 ( 87) AXYL3J 11 ( 88) ATOL1J 12 ( 89) ATOL2J 13 ( 90) ATOL3J 14 ( 91) ABNZ1J 15 ( 92) ABNZ2J 16 ( 93) ABNZ3J 17 ( 94) ATRP1J 18 ( 95) ATRP2J 19 ( 96) AISO1J 20 ( 97) AISO2J 21 ( 98) ASQTJ 22 ( 99) AORGCJ 23 (100) APOCJ 24 (101) APOCI 25 (102) APNCOMJ 26 (103) APNCOMI 27 (104) AECJ 28 (105) AECI 29 (106) AOTHRJ 30 (107) AFEJ 31 (108) AALJ 32 (109) ASIJ 33 (110) ATIJ 34 (111) ACAJ 35 (112) AMGJ 36 (113) AKJ 37 (114) AMNJ 38 (115) ACORS 39 (116) ASOIL 40 (117) NUMATKN 41 (118) NUMACC 42 (119) NUMCOR 43 (120) SRFATKN 44 (121) SRFACC 45 (122) SRFCOR 46 (123) AH2OJ 47 (124) AH2OI 48 (125) ANAJ 49 (126) ACLJ 50 (127) ACLI 51 (128) ASEACAT 52 (129) ACLK 53 (130) ASO4K 54 (131) ANH4K 55 (132) ANO3K 56 (133) AH2OK 57 (134) AISO3J 58 (135) AOLGAJ 59 (136) AOLGBJ Non-reactive species saved to CONC file: 1 (137) NH3 2 (138) HCL 3 (139) SV_ALK 4 (140) SV_XYL1 5 (141) SV_XYL2 6 (142) SV_TOL1 7 (143) SV_TOL2 8 (144) SV_BNZ1 9 (145) SV_BNZ2 10 (146) SV_TRP1 11 (147) SV_TRP2 12 (148) SV_ISO1 13 (149) SV_ISO2 14 (150) SV_SQT Timestep written to CTM_CONC_1 for date and time 2018001:000000 from timestep on initial data files for date and time 2018001:000000 after INITSCEN G 1.2078904E-01 A 1.2142689E+09 N 9.6477888E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: F returning FALSE Value for CTM_RUNLEN: 240000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/mcip/36km/GRIDDOT2D_2018-01-01" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 393216 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2018_36km/egts_36km_aero6_nodust_meic_reas_20180101.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 458752 opened as READONLY Starting date and time 2018001:000000 (0:00:00 Jan. 1, 2018) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 25 Checking header data for file: EMIS_1 "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/ocean/china.36km.oceanfile.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 524288 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/mcip/36km/METBDY3D_2018-01-01" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 18 lays, 17 vbles, 1 cells thick NetCDF ID: 589824 opened as READONLY Starting date and time 2018001:000000 (0:00:00 Jan. 1, 2018) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 25 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/mcip/36km/METDOT3D_2018-01-01" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 18 lays, 6 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2018001:000000 (0:00:00 Jan. 1, 2018) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 25 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/mcip/36km/METCRO2D_2018-01-01" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 34 vbles NetCDF ID: 720896 opened as READONLY Starting date and time 2018001:000000 (0:00:00 Jan. 1, 2018) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 25 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D "CTM_CONC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.CONC.36km_2018001" File type GRDDED3 Execution ID "CCTM_saprc99_ae6_aq_Linux4_x86_64gcc" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 150 vbles NetCDF ID: 786432 opened as VOLATILE READONLY Starting date and time 2018001:000000 (0:00:00 Jan. 1, 2018) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 1 Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.DRYDEP.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_WET_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.WETDEP1.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_WET_DEP_2 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.WETDEP2.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.SSEMIS.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.DUSTEMIS.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.AEROVIS.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DIAM_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.AERODIAM.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.PA_1.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.PA_2.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.PA_3.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.IRR_1.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.IRR_2.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.IRR_3.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. A_CONC_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.ACONC.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. S_CGRID :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.CGRID.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/bcon/bcon/BCON_saprc99_ae6_aq_36km_profile" File type BNDARY3 Execution ID "BCON_saprc99_ae6_aq_Linux4_x86_64gcc.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 85 vbles, 1 cells thick NetCDF ID: 851968 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/bcon/bcon/BCON_saprc99_ae6_aq_36km_profile" File type BNDARY3 Execution ID "BCON_saprc99_ae6_aq_Linux4_x86_64gcc.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 85 vbles, 1 cells thick NetCDF ID: 917504 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/bcon/bcon/BCON_saprc99_ae6_aq_36km_profile" File type BNDARY3 Execution ID "BCON_saprc99_ae6_aq_Linux4_x86_64gcc.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 85 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/icon/icon/ICON_saprc99_ae6_aq_36km_profile" File type GRDDED3 Execution ID "ICON_saprc99_ae6_aq_Linux4_x86_64gcc.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 85 vbles NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/bcon/bcon/BCON_saprc99_ae6_aq_36km_profile" File type BNDARY3 Execution ID "BCON_saprc99_ae6_aq_Linux4_x86_64gcc.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 18 lays, 85 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.DEPV.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.PT3D.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.PHOTDIAG1.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.PHOTDIAG2.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_A :EMIS_A >>--->> WARNING in subroutine OPEN3 File not available. EMIS_B :EMIS_B >>--->> WARNING in subroutine OPEN3 File not available. EMIS_M :EMIS_M >>--->> WARNING in subroutine OPEN3 File not available. EMIS_P :EMIS_P >>--->> WARNING in subroutine OPEN3 File not available. EMIS_N :EMIS_N >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/mcip/36km/GRIDCRO2D_2018-01-01" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 27 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Dimeji/Desktop/mcip/36km/GRIDCRO2D_2018-01-01" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 27 vbles NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.DEPVMOS.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.DDMOS.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.DDFST.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.DEPVFST.36km_2018001 >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. No inconsistent header data found on input files = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 13 From ADVSTEP - date/time: 2018001/000000 Computed synchronization step (HHMMSS): 001000 Number of Synchronization steps: 6 Layer Advection per Sync Step (HHMMSS) Step 18 000500 2 17 000320 3 16 000500 2 15 000500 2 14 000500 2 13 001000 1 12 001000 1 11 001000 1 10 001000 1 9 001000 1 8 001000 1 7 001000 1 6 001000 1 5 001000 1 4 001000 1 3 001000 1 2 001000 1 1 001000 1 Value for CTM_CKSUM not defined;returning default: TRUE Cksum on flag Environment variable not set ... Using default: 0 Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: N returning FALSE Value for CTM_MOSAIC: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for CTM_BIOGEMIS: N returning FALSE >>--->> WARNING in subroutine OPEMIS on PE 001 Emissions species HONO not found on EMIS_1 M3WARN: DTBUF 0:00:00 Jan. 1, 2018 (2018001:000000) >>--->> WARNING in subroutine OPEMIS on PE 001 Emissions species ARO1NBZ not found on EMIS_1 M3WARN: DTBUF 0:00:00 Jan. 1, 2018 (2018001:000000) >>--->> WARNING in subroutine OPEMIS on PE 001 Emissions species BENZENE not found on EMIS_1 M3WARN: DTBUF 0:00:00 Jan. 1, 2018 (2018001:000000) Gas Chemistry Emissions Processing in Vertical diffusion ... Non-reactives Emissions Processing in Vertical diffusion ... Number of Emissions Layers: 12 out of total Number of Model Layers: 18 Value for CTM_STDATE: 2018001 Value for CTM_STTIME: 0 Value for CTM_RUNLEN: 240000 Value for CTM_LTNG_NO: N returning FALSE Aerosol Emissions Processing in Vertical diffusion ... --- Aero Species Mapped --- --- PM Emis Species Mapped --- --- Precursor Species Mapped --- Value for CTM_SSEMDIAG not defined;returning default: FALSE Flag for writing the sea-salt-emission diagnostic file Environment variable not set ... Using default: 0 Value for CTM_WB_DUST: N returning FALSE === aerospc em_map 1 2 ASO4J 1 2 2 ANO3J 4 3 2 ACLJ 34 4 2 ANH4J 3 5 2 ANAJ 32 6 2 AMGJ 19 7 2 AKJ 20 8 2 ACAJ 18 9 1 APOCI 7 9 2 APOCJ 6 10 1 APNCOMI 9 10 2 APNCOMJ 8 11 1 AECI 11 11 2 AECJ 10 12 2 AFEJ 14 13 2 AALJ 15 14 2 ASIJ 16 15 2 ATIJ 17 16 2 AMNJ 21 17 2 AH2OJ 30 18 2 AOTHRJ 12 39 3 ACORS 22 modified aerospc em_fac Value for CTM_PT3DEMIS: N returning FALSE ====================================================================== --- Subroutine: M3DRY --- Found canopy wetness (WR) in MET_CRO_2D ====================================================================== ====================================================================== --- Subroutine: M3DRY --- Found 2-m water vapor mixing ratio (Q2) in MET_CRO_2D ====================================================================== >>--->> WARNING in subroutine GET_EMIS:INTERPX Variable "HONO" not in file EMIS_1 M3WARN: DTBUF 0:05:00 Jan. 1, 2018 (2018001:000500) >>--->> WARNING in subroutine GET_EMIS on PE 001 Could not read HONO from EMIS_1 M3WARN: DTBUF 0:05:00 Jan. 1, 2018 (2018001:000500) >>--->> WARNING in subroutine GET_EMIS:INTERPX Variable "ARO1NBZ" not in file EMIS_1 M3WARN: DTBUF 0:05:00 Jan. 1, 2018 (2018001:000500) >>--->> WARNING in subroutine GET_EMIS on PE 001 Could not read ARO1NBZ from EMIS_1 M3WARN: DTBUF 0:05:00 Jan. 1, 2018 (2018001:000500) >>--->> WARNING in subroutine GET_EMIS:INTERPX Variable "BENZENE" not in file EMIS_1 M3WARN: DTBUF 0:05:00 Jan. 1, 2018 (2018001:000500) >>--->> WARNING in subroutine GET_EMIS on PE 001 Could not read BENZENE from EMIS_1 M3WARN: DTBUF 0:05:00 Jan. 1, 2018 (2018001:000500) >>--->> WARNING in subroutine GET_SSEMIS:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 0:05:00 Jan. 1, 2018 (2018001:000500) >>--->> WARNING in subroutine GET_SSEMIS on PE 001 Could not interpolate SURF from OCEAN_1 . Surf-zone emissions set to zero. M3WARN: DTBUF 0:05:00 Jan. 1, 2018 (2018001:000500) Value for KZMIN: Y returning TRUE Maximum eddy diffusivity of: 271.69 (m**2/sec) at col, row, layer: 13, 5, 8 corresponding to a free tropospheric wind shear of: 7.00640E-03 (/sec), a bulk Richardson Number of: -3.6856 , and pot. temps. in layer and layer+1: 291.55 291.64 after VDIFF G 1.2127947E-01 A 1.2213375E+09 N 1.2595706E-04 after COUPLE_WR G 1.0985302E+03 A 1.0652113E+13 N 1.1462520E+00 No BC's in file BNDY_GASC_1 for the following adv species: Set to 1.00E-30 MEOH PROD2 RCO_OOH RCO_OH PBZN MA_PAN ACET NPHE PHEN RCHO BACL BALD ISOPROD DCB1 DCB3 TRP1 SESQ No BC's in file BNDY_AERO_1 for the following adv species: Set to 1.00E-30 ANH4J ANH4I ANO3J ANO3I AORGCJ APOCJ APOCI APNCOMJ APNCOMI AECJ AECI AOTHRJ AOTHRI AFEJ AALJ ASIJ ATIJ ACAJ AMGJ AKJ AMNJ AH2OJ AH2OI ANAJ ANAI ACLJ ACLI ASEACAT ACLK ASO4K ANH4K ANO3K AH2OK No BC's in file BNDY_NONR_1 for the following adv species: Set to 1.00E-30 HCL Reading U-windfield from MET_DOT_3D for variable: UWINDC Reading V-windfield from MET_DOT_3D for variable: VWINDC layer S (X3FACE_GD) Delta S 1 0.0100000 0.0100000 1.0000000 2 0.0200000 0.0100000 1.0000000 3 0.0300000 0.0100000 1.0000000 4 0.0400000 0.0100001 1.0000000 5 0.0500000 0.0100000 1.0000000 6 0.0600000 0.0100000 1.0000000 7 0.0700000 0.0100000 1.0000000 8 0.0900000 0.0200000 1.0000000 9 0.1100000 0.0200000 1.0000000 10 0.1300000 0.0200000 1.0000000 11 0.1500000 0.0200000 1.0000000 12 0.2250000 0.0750000 1.0000000 13 0.3100000 0.0850000 1.0000000 14 0.4000000 0.0900000 1.0000000 15 0.5250000 0.1250000 1.0000000 16 0.7100000 0.1850001 1.0000000 17 0.9100000 0.1999999 1.0000000 18 1.0000000 0.0900000 1.0000000 after ADV G 1.0989222E+03 A 1.0654517E+13 N 1.1455516E+00 H-eddy DT & integration steps: 6.0000000E+02 1 after HDIFF G 1.0989222E+03 A 1.0654517E+13 N 1.1455516E+00 after DECOUPLE_ G 1.2128159E-01 A 1.2214779E+09 N 1.2582779E-04 Value for CLD_DIAG: N returning FALSE no surrogates for aqueous species CO2...using background value of 340.0000