Loading required package: ncdf4 IMPROVE Flag = T CSN Flag = T CASTNET Weekly Flag = T CASTNET DryDep Flag = T CASTNET O3 DryDep Flag = T CASTNET Hourly Flag = T CASTNET Daily O3 (Max) Flag = T NADP Flag = T MDN Flag = F AQS Hourly Flag = T AQS Daily O3 (Max) Flag = T AQS Daily Flag = T SEARCH Hourly Flag = T SEARCH Daily Flag = T AIRMON Flag = AMON Flag = T AERONET Flag = T FLUXNET Flag = F NAPS Flag = T NAPS Daily O3 Flag = T NOAA ESRL O3 Flag = F EMEP Hourly Flag = F EMEP Daily O3 Flag = F EMEP Daily Flag = F EMEP Dep Flag = F AURN Hourly Flag = AURN Daily Flag = AIRBASE Hourly Flag = AIRBASE Daily Flag = ADMN Flag = NAMN Flag = TOAR Flag = F Wrote site compare script for network IMPROVE Running site compare for network IMPROVE .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'SO4f_val,ug/m3,ASO4IJ,,SO4' Value for AERO_1: 'SO4f_val,ug/m3,ASO4IJ,,SO4' Value for AERO_2: 'NO3f_val,ug/m3,ANO3IJ,,NO3' Value for AERO_2: 'NO3f_val,ug/m3,ANO3IJ,,NO3' Value for AERO_3: '0.2903*NO3f_val+0.375*SO4f_val,ug/m3,ANH4IJ,,NH4' Value for AERO_3: '0.2903*NO3f_val+0.375*SO4f_val,ug/m3,ANH4IJ,,NH4' Value for AERO_4: 'MF_val,ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for AERO_4: 'MF_val,ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for AERO_5: 'OCf_val,ug/m3,AOCIJ,,OC' Value for AERO_5: 'OCf_val,ug/m3,AOCIJ,,OC' Value for AERO_6: 'ECf_val,ug/m3,AECIJ,,EC' Value for AERO_6: 'ECf_val,ug/m3,AECIJ,,EC' Value for AERO_7: 'OCf_val+ECf_val,ug/m3,AOCIJ+AECIJ,,TC' Value for AERO_7: 'OCf_val+ECf_val,ug/m3,AOCIJ+AECIJ,,TC' Value for AERO_8: 'CHLf_val,ug/m3,ACLIJ,ug/m3,Cl' Value for AERO_8: 'CHLf_val,ug/m3,ACLIJ,ug/m3,Cl' Value for AERO_9: 'MT_val,ug/m3,ATOTIJK,ug/m3,PM10' Value for AERO_9: 'MT_val,ug/m3,ATOTIJK,ug/m3,PM10' Value for AERO_10: 'CM_calculated_val,ug/m3,ATOTK,ug/m3,PMC_TOT' Value for AERO_10: 'CM_calculated_val,ug/m3,ATOTK,ug/m3,PMC_TOT' Value for AERO_11: 'SO4f_val,ug/m3,PM25_SO4,,PM25_SO4' Value for AERO_11: 'SO4f_val,ug/m3,PM25_SO4,,PM25_SO4' Value for AERO_12: 'NO3f_val,ug/m3,PM25_NO3,,PM25_NO3' Value for AERO_12: 'NO3f_val,ug/m3,PM25_NO3,,PM25_NO3' Value for AERO_13: '0.2903*NO3f_val+0.375*SO4f_val,ug/m3,PM25_NH4,,PM25_NH4' Value for AERO_13: '0.2903*NO3f_val+0.375*SO4f_val,ug/m3,PM25_NH4,,PM25_NH4' Value for AERO_14: 'OCf_val,ug/m3,PM25_OC,,PM25_OC' Value for AERO_14: 'OCf_val,ug/m3,PM25_OC,,PM25_OC' Value for AERO_15: 'ECf_val,ug/m3,PM25_EC,,PM25_EC' Value for AERO_15: 'ECf_val,ug/m3,PM25_EC,,PM25_EC' Value for AERO_16: 'OCf_val+ECf_val,ug/m3,PM25_OC+PM25_EC,,PM25_TC' Value for AERO_16: 'OCf_val+ECf_val,ug/m3,PM25_OC+PM25_EC,,PM25_TC' Value for AERO_17: 'MF_val,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_17: 'MF_val,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_18: 'CHLf_val,ug/m3,PM25_CL,ug/m3,PM25_Cl' Value for AERO_18: 'CHLf_val,ug/m3,PM25_CL,ug/m3,PM25_Cl' Value for AERO_19: 'CM_calculated_val,ug/m3,PMC_TOT,ug/m3,PMC_TOT_CUT' Value for AERO_19: 'CM_calculated_val,ug/m3,PMC_TOT,ug/m3,PMC_TOT_CUT' Value for AERO_20: 'NAf_val,ug/m3, ANAIJ,,Na' Value for AERO_20: 'NAf_val,ug/m3, ANAIJ,,Na' Value for AERO_21: 'NAf_val + CHLf_val,ug/m3,ACLIJ + ANAIJ,,NaCl' Value for AERO_21: 'NAf_val + CHLf_val,ug/m3,ACLIJ + ANAIJ,,NaCl' Value for AERO_22: 'FEf_val,ug/m3, AFEJ,,Fe' Value for AERO_22: 'FEf_val,ug/m3, AFEJ,,Fe' Value for AERO_23: 'ALf_val,ug/m3,AALJ,,Al' Value for AERO_23: 'ALf_val,ug/m3,AALJ,,Al' Value for AERO_24: 'SIf_val,ug/m3, ASIJ,,Si' Value for AERO_24: 'SIf_val,ug/m3, ASIJ,,Si' Value for AERO_25: 'TIf_val,ug/m3, ATIJ,,Ti' Value for AERO_25: 'TIf_val,ug/m3, ATIJ,,Ti' Value for AERO_26: 'CAf_val,ug/m3,ACAJ,,Ca' Value for AERO_26: 'CAf_val,ug/m3,ACAJ,,Ca' Value for AERO_27: 'MGf_val,ug/m3,AMGJ,,Mg' Value for AERO_27: 'MGf_val,ug/m3,AMGJ,,Mg' Value for AERO_28: 'Kf_val,ug/m3,AKJ,,K' Value for AERO_28: 'Kf_val,ug/m3,AKJ,,K' Value for AERO_29: 'MNf_val,ug/m3,AMNJ,,Mn' Value for AERO_29: 'MNf_val,ug/m3,AMNJ,,Mn' Value for AERO_30: '2.20*ALf_val+2.49*SIf_val+1.63*CAf_val+2.42*FEf_val+1.94*TIf_val,ug/m3,ASOILJ,,soil' Value for AERO_30: '2.20*ALf_val+2.49*SIf_val+1.63*CAf_val+2.42*FEf_val+1.94*TIf_val,ug/m3,ASOILJ,,soil' Value for AERO_31: 'MF_val-SO4f_val-NO3f_val-0.2903*NO3f_val-0.375*SO4f_val-OCf_val-ECf_val-NAf_val-CHLf_val-2.2*ALf_val-2.49*SIf_val-1.63*CAf_val-2.42*FEf_val-1.94*TIf_val,ug/m3,AUNSPEC1IJ,,OTHER' Value for AERO_31: 'MF_val-SO4f_val-NO3f_val-0.2903*NO3f_val-0.375*SO4f_val-OCf_val-ECf_val-NAf_val-CHLf_val-2.2*ALf_val-2.49*SIf_val-1.63*CAf_val-2.42*FEf_val-1.94*TIf_val,ug/m3,AUNSPEC1IJ,,OTHER' Value for AERO_32: '0.8*OCf_val,ug/m3, ANCOMIJ,,NCOM' Value for AERO_32: '0.8*OCf_val,ug/m3, ANCOMIJ,,NCOM' Value for AERO_33: 'MF_val-SO4f_val-NO3f_val-0.2903*NO3f_val-0.375*SO4f_val-OCf_val-ECf_val-NAf_val-CHLf_val-2.2*ALf_val-2.49*SIf_val-1.63*CAf_val-2.42*FEf_val-1.94*TIf_val,ug/m3, AUNSPEC2IJ,,OTHER_REM' Value for AERO_33: 'MF_val-SO4f_val-NO3f_val-0.2903*NO3f_val-0.375*SO4f_val-OCf_val-ECf_val-NAf_val-CHLf_val-2.2*ALf_val-2.49*SIf_val-1.63*CAf_val-2.42*FEf_val-1.94*TIf_val,ug/m3, AUNSPEC2IJ,,OTHER_REM' Value for AERO_34 not defined; returning defaultval ': 'Not Used' Value for AERO_34 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'IMPROVE' Value for TABLE_TYPE: 'IMPROVE' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/IMPROVE_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/IMPROVE_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/IMPROVE_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/IMPROVE_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/IMPROVE_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/IMPROVE_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/IMP >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network IMPROVE Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: IMPROVE Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/IMPROVE_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/IMPROVE_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network IMPROVE Wrote site compare script for network CSN Running site compare for network CSN .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'm_so4,ug/m3, ASO4IJ,,SO4' Value for AERO_1: 'm_so4,ug/m3, ASO4IJ,,SO4' Value for AERO_2: 'm_no3,ug/m3, ANO3IJ,,NO3' Value for AERO_2: 'm_no3,ug/m3, ANO3IJ,,NO3' Value for AERO_3: 'm_nh4,ug/m3, ANH4IJ,,NH4' Value for AERO_3: 'm_nh4,ug/m3, ANH4IJ,,NH4' Value for AERO_4: 'PM2.5 Mass,ug/m3,ATOTIJ,,PM_TOT' Value for AERO_4: 'PM2.5 Mass,ug/m3,ATOTIJ,,PM_TOT' Value for AERO_5: 'PM2.5 Mass,ug/m3,PMIJ_FRM,,PM_FRM' Value for AERO_5: 'PM2.5 Mass,ug/m3,PMIJ_FRM,,PM_FRM' Value for AERO_6: 'oc_adj,ug/m3, AOCIJ,,OC' Value for AERO_6: 'oc_adj,ug/m3, AOCIJ,,OC' Value for AERO_7: 'ec_tor,ug/m3, AECIJ,,EC' Value for AERO_7: 'ec_tor,ug/m3, AECIJ,,EC' Value for AERO_8: 'oc_adj+ec_tor,ug/m3,AOCIJ+AECIJ,,TC' Value for AERO_8: 'oc_adj+ec_tor,ug/m3,AOCIJ+AECIJ,,TC' Value for AERO_9: 'm_so4,ug/m3, PM25_SO4,,PM25_SO4' Value for AERO_9: 'm_so4,ug/m3, PM25_SO4,,PM25_SO4' Value for AERO_10: 'm_no3,ug/m3, PM25_NO3,,PM25_NO3' Value for AERO_10: 'm_no3,ug/m3, PM25_NO3,,PM25_NO3' Value for AERO_11: 'm_nh4,ug/m3, PM25_NH4,,PM25_NH4' Value for AERO_11: 'm_nh4,ug/m3, PM25_NH4,,PM25_NH4' Value for AERO_12: 'oc_adj,ug/m3, PM25_OC,,PM25_OC' Value for AERO_12: 'oc_adj,ug/m3, PM25_OC,,PM25_OC' Value for AERO_13: 'ec_tor,ug/m3, PM25_EC,,PM25_EC' Value for AERO_13: 'ec_tor,ug/m3, PM25_EC,,PM25_EC' Value for AERO_14: 'oc_adj+ec_tor,ug/m3,PM25_OC+PM25_EC,,PM25_TC' Value for AERO_14: 'oc_adj+ec_tor,ug/m3,PM25_OC+PM25_EC,,PM25_TC' Value for AERO_15: 'PM2.5 Mass,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_15: 'PM2.5 Mass,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_16: 'PM2.5 Mass,ug/m3,PM25_FRM,ug/m3,PM25_FRM' Value for AERO_16: 'PM2.5 Mass,ug/m3,PM25_FRM,ug/m3,PM25_FRM' Value for AERO_17: 'Sodium Ion,ug/m3, ANAIJ,,Na' Value for AERO_17: 'Sodium Ion,ug/m3, ANAIJ,,Na' Value for AERO_18: 'chlorine,ug/m3, ACLIJ,,Cl' Value for AERO_18: 'chlorine,ug/m3, ACLIJ,,Cl' Value for AERO_19: 'iron,ug/m3, AFEJ,,Fe' Value for AERO_19: 'iron,ug/m3, AFEJ,,Fe' Value for AERO_20: 'aluminum,ug/m3,AALJ,,Al' Value for AERO_20: 'aluminum,ug/m3,AALJ,,Al' Value for AERO_21: 'silicon,ug/m3, ASIJ,,Si' Value for AERO_21: 'silicon,ug/m3, ASIJ,,Si' Value for AERO_22: 'titanium,ug/m3, ATIJ,,Ti' Value for AERO_22: 'titanium,ug/m3, ATIJ,,Ti' Value for AERO_23: 'calcium,ug/m3,ACAJ,,Ca' Value for AERO_23: 'calcium,ug/m3,ACAJ,,Ca' Value for AERO_24: 'magnesium,ug/m3,AMGJ,,Mg' Value for AERO_24: 'magnesium,ug/m3,AMGJ,,Mg' Value for AERO_25: 'potassium,ug/m3,AKJ,,K' Value for AERO_25: 'potassium,ug/m3,AKJ,,K' Value for AERO_26: 'manganese,ug/m3,AMNJ,,Mn' Value for AERO_26: 'manganese,ug/m3,AMNJ,,Mn' Value for AERO_27: '2.2*aluminum+2.49*silicon+1.63*calcium+2.42*iron+1.94*titanium,ug/m3,ASOILJ,,soil' Value for AERO_27: '2.2*aluminum+2.49*silicon+1.63*calcium+2.42*iron+1.94*titanium,ug/m3,ASOILJ,,soil' Value for AERO_28: 'Sodium Ion + chlorine, ug/m3, ANAIJ+ACLIJ,,NaCl' Value for AERO_28: 'Sodium Ion + chlorine, ug/m3, ANAIJ+ACLIJ,,NaCl' Value for AERO_29: 'PM2.5 Mass - m_so4 - m_no3 - m_nh4 - oc_adj - ec_tor - [Sodium Ion] - [chlorine] - 2.2*aluminum - 2.49*silicon - 1.63*calcium - 2.42*iron - 1.94*titanium , ug/m3, AUNSPEC1IJ,,OTHER' Value for AERO_29: 'PM2.5 Mass - m_so4 - m_no3 - m_nh4 - oc_adj - ec_tor - [Sodium Ion] - [chlorine] - 2.2*aluminum - 2.49*silicon - 1.63*calcium - 2.42*iron - 1.94*titanium , ug/m3, AUNSPEC1IJ,,OTHER' Value for AERO_30: '0.8*oc_adj, ug/m3, ANCOMIJ,,NCOM' Value for AERO_30: '0.8*oc_adj, ug/m3, ANCOMIJ,,NCOM' Value for AERO_31: 'PM2.5 Mass - m_so4 - m_no3 - m_nh4 - oc_adj - ec_tor - [Sodium Ion] - [chlorine] - 2.2*aluminum - 2.49*silicon - 1.63*calcium - 2.42*iron - 1.94*titanium - 0.8*oc_adj, ug/m3, AUNSPEC2IJ,,OTHER_REM' Value for AERO_31: 'PM2.5 Mass - m_so4 - m_no3 - m_nh4 - oc_adj - ec_tor - [Sodium Ion] - [chlorine] - 2.2*aluminum - 2.49*silicon - 1.63*calcium - 2.42*iron - 1.94*titanium - 0.8*oc_adj, ug/m3, AUNSPEC2IJ,,OTHER_REM' Value for AERO_32 not defined; returning defaultval ': 'Not Used' Value for AERO_32 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'STN' Value for TABLE_TYPE: 'STN' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CSN_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CSN_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CSN_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CSN_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network CSN Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: CSN Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CSN_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CSN_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network CSN Wrote site compare script for network CASTNET Running site compare for network CASTNET .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'tso4,ug/m3,ASO4IJ,ug/m3,SO4' Value for AERO_1: 'tso4,ug/m3,ASO4IJ,ug/m3,SO4' Value for AERO_2: 'tno3,ug/m3,ANO3IJ,ug/m3,NO3' Value for AERO_2: 'tno3,ug/m3,ANO3IJ,ug/m3,NO3' Value for AERO_3: 'tnh4,ug/m3,ANH4IJ,ug/m3,NH4' Value for AERO_3: 'tnh4,ug/m3,ANH4IJ,ug/m3,NH4' Value for AERO_4: 'tno3+nhno3,ug/m3,ANO3IJ+HNO3_UGM3,ug/m3,TNO3' Value for AERO_4: 'tno3+nhno3,ug/m3,ANO3IJ+HNO3_UGM3,ug/m3,TNO3' Value for AERO_5: 'tso4,ug/m3,PM25_SO4,ug/m3,PM25_SO4' Value for AERO_5: 'tso4,ug/m3,PM25_SO4,ug/m3,PM25_SO4' Value for AERO_6: 'tno3,ug/m3,PM25_NO3,ug/m3,PM25_NO3' Value for AERO_6: 'tno3,ug/m3,PM25_NO3,ug/m3,PM25_NO3' Value for AERO_7: 'tnh4,ug/m3,PM25_NH4,ug/m3,PM25_NH4' Value for AERO_7: 'tnh4,ug/m3,PM25_NH4,ug/m3,PM25_NH4' Value for AERO_8: 'tno3+nhno3,ug/m3,PM25_NO3+HNO3_UGM3,ug/m3,PM25_TNO3' Value for AERO_8: 'tno3+nhno3,ug/m3,PM25_NO3+HNO3_UGM3,ug/m3,PM25_TNO3' Value for AERO_9: 'MG,ug/m3,AMGJ,ug/m3,MG' Value for AERO_9: 'MG,ug/m3,AMGJ,ug/m3,MG' Value for AERO_10: 'CA,ug/m3,ACAJ,ug/m3,CA' Value for AERO_10: 'CA,ug/m3,ACAJ,ug/m3,CA' Value for AERO_11: 'K,ug/m3,AKJ,ug/m3,K' Value for AERO_11: 'K,ug/m3,AKJ,ug/m3,K' Value for AERO_12: 'NA,ug/m3,ANAIJ,ug/m3,NA' Value for AERO_12: 'NA,ug/m3,ANAIJ,ug/m3,NA' Value for AERO_13: 'CL,ug/m3,ACLIJ,ug/m3,CL' Value for AERO_13: 'CL,ug/m3,ACLIJ,ug/m3,CL' Value for AERO_14 not defined; returning defaultval ': 'Not Used' Value for AERO_14 not defined; returning defaultval ': 'Not Used' Value for GAS_1: 'nhno3,ug/m3,HNO3_UGM3,,HNO3' Value for GAS_1: 'nhno3,ug/m3,HNO3_UGM3,,HNO3' Value for GAS_2: 'total_so2,ug/m3,SO2_UGM3,,SO2' Value for GAS_2: 'total_so2,ug/m3,SO2_UGM3,,SO2' Value for GAS_3: '1.15*total_so2,ug/m3,SO2_UGM3,,SO2_adj' Value for GAS_3: '1.15*total_so2,ug/m3,SO2_UGM3,,SO2_adj' Value for GAS_4 not defined; returning defaultval ': 'Not Used' Value for GAS_4 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_weekly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_weekly_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CAS >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network CASTNET Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: CASTNET Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network CASTNET Wrote site compare script for network CASTNET_Hourly Running site compare for network CASTNET_Hourly .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1: 'ozone,ppb,O3,ppb,O3' Value for GAS_1: 'ozone,ppb,O3,ppb,O3' Value for GAS_2: 'temperature,C,SFC_TMP,C,SFC_TMP' Value for GAS_2: 'temperature,C,SFC_TMP,C,SFC_TMP' Value for GAS_3: 'relative_humidity,%,RH,%,RH' Value for GAS_3: 'relative_humidity,%,RH,%,RH' Value for GAS_4: 'solar_radiation,watts/m2,SOL_RAD,watts/m2,Solar_Rad' Value for GAS_4: 'solar_radiation,watts/m2,SOL_RAD,watts/m2,Solar_Rad' Value for GAS_5: 'precipitation,mm/hr,precip,mm/hr,precip' Value for GAS_5: 'precipitation,mm/hr,precip,mm/hr,precip' Value for GAS_6: 'windspeed,m/s,WSPD10,m/s,WSPD10' Value for GAS_6: 'windspeed,m/s,WSPD10,m/s,WSPD10' Value for GAS_7 not defined; returning defaultval ': 'Not Used' Value for GAS_7 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'MET' Value for TABLE_TYPE: 'MET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_hourly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_hourly_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Hourly_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Hourly_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CAS >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network CASTNET_Hourly Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: CASTNET_Hourly Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Hourly_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Hourly_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network CASTNET_Hourly Wrote site compare script for network CASTNET_Daily Running site compare for network CASTNET_Daily .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for OBS_FACTOR: 1 Value for OZONE: '1*O3,ppb' Value for OZONE: '1*O3,ppb' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_hourly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_hourly_data_2010.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Daily_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Daily_PXM_LandUse_AQ.csv' Value for OBS_SPECIES: 'OZONE' Value for OBS_SPECIES: 'OZONE' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for HOURS_8HRMAX: 24 Value for APPLY_DLS: N returning FALSE Value for LAMBXY: N returning FALSE Value for MISSING: '-999' Value for MISSING: '-999' Value for QA_FLAG_CHECK: Y returning TRUE Value for QA_FLAG_HEADER not defined; returning defaultval ': 'OZONE_F ' Value for QA_FLAG_HEADER not defined; returning defaultval ': 'OZONE_F ' WARNING: no value assigned to QA_FLAG_HEADER USING DEFAULT OZONE_F Value for QA_FLAG_VALUES not defined; returning defaultval ': 'BCDFIMP ' Value for QA_FLAG_VALUES not defined; returning defaultval ': 'BCDFIMP ' WARNING: no value assigned to QA_FLAG_VALUES USING DEFAULT BCDFIMP Value for FILL_MISSING not defined;returning default: FALSE Value for MISS_CHECK not defined;returning default: TRUE Value for PARTIAL_DAY: 'Y' Value for PARTIAL_DAY: 'Y' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' *** ERROR ABORT in subroutine LOAD_SITES Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CAS Finished running site compare for network CASTNET_Daily Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: CASTNET_Daily Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Daily_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Daily_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network CASTNET_Daily Wrote site compare script for network CASTNET_Drydep Running site compare for network CASTNET_Drydep .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 102 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:190000 (19:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 102 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:190000 (19:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1: 'SO2_FLUX,kg/ha,DDEP_SO2,,SO2_ddep' Value for PREC_1: 'SO2_FLUX,kg/ha,DDEP_SO2,,SO2_ddep' Value for PREC_2: 'HNO3_FLUX,kg/ha,DDEP_HNO3,,HNO3_ddep' Value for PREC_2: 'HNO3_FLUX,kg/ha,DDEP_HNO3,,HNO3_ddep' Value for PREC_3: 'HNO3_FLUX+NO3_FLUX,kg/ha,DDEP_TNO3,,TNO3_ddep' Value for PREC_3: 'HNO3_FLUX+NO3_FLUX,kg/ha,DDEP_TNO3,,TNO3_ddep' Value for PREC_4: 'SO4_FLUX,kg/ha,DDEP_ASO4IJ,,SO4_ddep' Value for PREC_4: 'SO4_FLUX,kg/ha,DDEP_ASO4IJ,,SO4_ddep' Value for PREC_5: 'NO3_FLUX,kg/ha,DDEP_ANO3IJ,,NO3_ddep' Value for PREC_5: 'NO3_FLUX,kg/ha,DDEP_ANO3IJ,,NO3_ddep' Value for PREC_6: 'NH4_FLUX,kg/ha,DDEP_NHX,,NH4_ddep' Value for PREC_6: 'NH4_FLUX,kg/ha,DDEP_NHX,,NH4_ddep' Value for PREC_7 not defined; returning defaultval ': 'Not Used' Value for PREC_7 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_weekly_drydep_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_weekly_drydep_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Drydep_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Drydep_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CAS >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network CASTNET_Drydep Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: CASTNET_Drydep Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Drydep_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Drydep_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network CASTNET_Drydep Wrote site compare script for network CASTNET_Drydep_O3 Running site compare for network CASTNET_Drydep_O3 .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 102 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:190000 (19:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 102 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:190000 (19:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1: 'FLUX,kg/ha,DDEP_O3,,O3_ddep' Value for PREC_1: 'FLUX,kg/ha,DDEP_O3,,O3_ddep' Value for PREC_2 not defined; returning defaultval ': 'Not Used' Value for PREC_2 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_hourly_drydep_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/CASTNET_hourly_drydep_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CASTNET_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Drydep_O3_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Drydep_O3_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/CAS >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network CASTNET_Drydep_O3 Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: CASTNET_Drydep_O3 Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Drydep_O3_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/CASTNET_Drydep_O3_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network CASTNET_Drydep_O3 Wrote site compare script for network NADP Running site compare for network NADP .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 102 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:190000 (19:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_DEP_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 102 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:190000 (19:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1: 'Valcode' Value for CHAR_1: 'Valcode' Value for CHAR_2: 'Invalcode' Value for CHAR_2: 'Invalcode' Value for CHAR_3 not defined; returning defaultval ': 'Not Used' Value for CHAR_3 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1: 'NH4,kg/ha,WDEP_NHX,kg/ha,NH4_dep' Value for WETDEP_1: 'NH4,kg/ha,WDEP_NHX,kg/ha,NH4_dep' Value for WETDEP_2: 'NO3,kg/ha,WDEP_TNO3,kg/ha,NO3_dep' Value for WETDEP_2: 'NO3,kg/ha,WDEP_TNO3,kg/ha,NO3_dep' Value for WETDEP_3: 'SO4,kg/ha,WDEP_TSO4,kg/ha,SO4_dep' Value for WETDEP_3: 'SO4,kg/ha,WDEP_TSO4,kg/ha,SO4_dep' Value for WETDEP_4: 'Cl,kg/ha,WDEP_TCL,kg/ha,Cl_dep' Value for WETDEP_4: 'Cl,kg/ha,WDEP_TCL,kg/ha,Cl_dep' Value for WETDEP_5: 'Na,kg/ha,WDEP_ANAJK,kg/ha,Na_dep' Value for WETDEP_5: 'Na,kg/ha,WDEP_ANAJK,kg/ha,Na_dep' Value for WETDEP_6: 'Ca,kg/ha,WDEP_CAJK,kg/ha,CA_dep' Value for WETDEP_6: 'Ca,kg/ha,WDEP_CAJK,kg/ha,CA_dep' Value for WETDEP_7: 'Mg,kg/ha,WDEP_MGJK,kg/ha,MG_dep' Value for WETDEP_7: 'Mg,kg/ha,WDEP_MGJK,kg/ha,MG_dep' Value for WETDEP_8: 'K,kg/ha,WDEP_KJK,kg/ha,K_dep' Value for WETDEP_8: 'K,kg/ha,WDEP_KJK,kg/ha,K_dep' Value for WETDEP_9 not defined; returning defaultval ': 'Not Used' Value for WETDEP_9 not defined; returning defaultval ': 'Not Used' Value for WETCON_1: 'NH4,mg/l,WDEP_NHX,mg/l,NH4_conc' Value for WETCON_1: 'NH4,mg/l,WDEP_NHX,mg/l,NH4_conc' Value for WETCON_2: 'NO3,mg/l,WDEP_TNO3,mg/l,NO3_conc' Value for WETCON_2: 'NO3,mg/l,WDEP_TNO3,mg/l,NO3_conc' Value for WETCON_3: 'SO4,mg/l,WDEP_TSO4,mg/l,SO4_conc' Value for WETCON_3: 'SO4,mg/l,WDEP_TSO4,mg/l,SO4_conc' Value for WETCON_4: 'Cl,mg/l,WDEP_TCL,mg/l,Cl_conc' Value for WETCON_4: 'Cl,mg/l,WDEP_TCL,mg/l,Cl_conc' Value for WETCON_5: 'Na,mg/l,WDEP_ANAJK,mg/l,Na_conc' Value for WETCON_5: 'Na,mg/l,WDEP_ANAJK,mg/l,Na_conc' Value for WETCON_6: 'Ca,mg/l,WDEP_CAJK,mg/l,CA_conc' Value for WETCON_6: 'Ca,mg/l,WDEP_CAJK,mg/l,CA_conc' Value for WETCON_7: 'Mg,mg/l,WDEP_MGJK,mg/l,MG_conc' Value for WETCON_7: 'Mg,mg/l,WDEP_MGJK,mg/l,MG_conc' Value for WETCON_8: 'K,mg/l,WDEP_KJK,mg/l,K_conc' Value for WETCON_8: 'K,mg/l,WDEP_KJK,mg/l,K_conc' Value for WETCON_9 not defined; returning defaultval ': 'Not Used' Value for WETCON_9 not defined; returning defaultval ': 'Not Used' Value for PREC_1: 'Sub Ppt,mm,10*RT,mm,Precip' Value for PREC_1: 'Sub Ppt,mm,10*RT,mm,Precip' Value for PREC_2 not defined; returning defaultval ': 'Not Used' Value for PREC_2 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'NADP' Value for TABLE_TYPE: 'NADP' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/NADP_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/NADP_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NADP_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NADP_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NADP_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NADP_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NAD >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network NADP Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: NADP Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NADP_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NADP_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network NADP Wrote site compare script for network AMON Running site compare for network AMON .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1: 'REPLICATE' Value for CHAR_1: 'REPLICATE' Value for CHAR_2: 'QR' Value for CHAR_2: 'QR' Value for CHAR_3 not defined; returning defaultval ': 'Not Used' Value for CHAR_3 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'CONC,ug/m3,NH3_UGM3,ug/m3,NH3' Value for AERO_1: 'CONC,ug/m3,NH3_UGM3,ug/m3,NH3' Value for AERO_2 not defined; returning defaultval ': 'Not Used' Value for AERO_2 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/All_Years/AMON_data.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/All_Years/AMON_data.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AMON_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AMON_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AMON_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AMON_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AMO >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network AMON Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: AMON Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AMON_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AMON_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network AMON Wrote site compare script for network AQS_Daily_O3 Running site compare for network AQS_Daily_O3 .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for OBS_FACTOR: 1 Value for OZONE: '1*O3,ppb' Value for OZONE: '1*O3,ppb' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/AQS_hourly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/AQS_hourly_data_2010.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Daily_O3_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Daily_O3_PXM_LandUse_AQ.csv' Value for OBS_SPECIES: 'O3' Value for OBS_SPECIES: 'O3' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for HOURS_8HRMAX: 24 Value for APPLY_DLS: N returning FALSE Value for LAMBXY: N returning FALSE Value for MISSING: '-999' Value for MISSING: '-999' Value for QA_FLAG_CHECK: N returning FALSE Value for FILL_MISSING not defined;returning default: FALSE Value for MISS_CHECK not defined;returning default: TRUE Value for PARTIAL_DAY: 'Y' Value for PARTIAL_DAY: 'Y' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS_full_site_list.csv' *** ERROR ABORT in subroutine LOAD_SITES Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS Finished running site compare for network AQS_Daily_O3 Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: AQS_Daily_O3 Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Daily_O3_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Daily_O3_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network AQS_Daily_O3 Wrote site compare script for network AQS_Daily Running site compare for network AQS_Daily .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'PM25,ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for AERO_1: 'PM25,ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for AERO_2: 'PM25,ug/m3,PMIJ_FRM,ug/m3,PM_FRM' Value for AERO_2: 'PM25,ug/m3,PMIJ_FRM,ug/m3,PM_FRM' Value for AERO_3: 'PM10,ug/m3,ATOTIJK,ug/m3,PM10' Value for AERO_3: 'PM10,ug/m3,ATOTIJK,ug/m3,PM10' Value for AERO_4: 'Isoprene,ppb,ISOP,ppb,Isoprene' Value for AERO_4: 'Isoprene,ppb,ISOP,ppb,Isoprene' Value for AERO_5: 'Ethylene,ppb,ETH,ppb,Ethylene' Value for AERO_5: 'Ethylene,ppb,ETH,ppb,Ethylene' Value for AERO_6: 'Ethane,ppb,ETHA,ppb,Ethane' Value for AERO_6: 'Ethane,ppb,ETHA,ppb,Ethane' Value for AERO_7: 'Toluene,ppb,TOL,ppb,Toluene' Value for AERO_7: 'Toluene,ppb,TOL,ppb,Toluene' Value for AERO_8: 'Acetaldehyde,ppb,ALD2,ppb,Acetaldehyde' Value for AERO_8: 'Acetaldehyde,ppb,ALD2,ppb,Acetaldehyde' Value for AERO_9: 'Formaldehyde,ppb,FORM,ppb,Formaldehyde' Value for AERO_9: 'Formaldehyde,ppb,FORM,ppb,Formaldehyde' Value for AERO_10: 'OC+OC_Blank,ug/m3,AOCIJ,ug/m3,OC' Value for AERO_10: 'OC+OC_Blank,ug/m3,AOCIJ,ug/m3,OC' Value for AERO_11: 'EC,ug/m3,AECIJ,ug/m3,EC' Value for AERO_11: 'EC,ug/m3,AECIJ,ug/m3,EC' Value for AERO_12: 'OC+OC_Blank+EC,ug/m3,AOCIJ+AECIJ,,TC' Value for AERO_12: 'OC+OC_Blank+EC,ug/m3,AOCIJ+AECIJ,,TC' Value for AERO_13: 'Na,ug/m3, ANAIJ,,Na' Value for AERO_13: 'Na,ug/m3, ANAIJ,,Na' Value for AERO_14: 'Cl,ug/m3, ACLIJ,,Cl' Value for AERO_14: 'Cl,ug/m3, ACLIJ,,Cl' Value for AERO_15: 'Na+Cl,ug/m3,ACLIJ+ANAIJ,,NaCl' Value for AERO_15: 'Na+Cl,ug/m3,ACLIJ+ANAIJ,,NaCl' Value for AERO_16: 'SO4,ug/m3,ASO4IJ,ug/m3,SO4' Value for AERO_16: 'SO4,ug/m3,ASO4IJ,ug/m3,SO4' Value for AERO_17: 'NO3,ug/m3,ANO3IJ,ug/m3,NO3' Value for AERO_17: 'NO3,ug/m3,ANO3IJ,ug/m3,NO3' Value for AERO_18: 'NH4,ug/m3,ANH4IJ,ug/m3,NH4' Value for AERO_18: 'NH4,ug/m3,ANH4IJ,ug/m3,NH4' Value for AERO_19: 'PM25,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_19: 'PM25,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_20: 'PM25,ug/m3,PM25_FRM,,PM25_FRM' Value for AERO_20: 'PM25,ug/m3,PM25_FRM,,PM25_FRM' Value for AERO_21: 'SO4,ug/m3, PM25_SO4,,PM25_SO4' Value for AERO_21: 'SO4,ug/m3, PM25_SO4,,PM25_SO4' Value for AERO_22: 'NO3,ug/m3, PM25_NO3,,PM25_NO3' Value for AERO_22: 'NO3,ug/m3, PM25_NO3,,PM25_NO3' Value for AERO_23: 'NH4,ug/m3, PM25_NH4,,PM25_NH4' Value for AERO_23: 'NH4,ug/m3, PM25_NH4,,PM25_NH4' Value for AERO_24: 'OC+OC_Blank,ug/m3, PM25_OC,,PM25_OC' Value for AERO_24: 'OC+OC_Blank,ug/m3, PM25_OC,,PM25_OC' Value for AERO_25: 'EC,ug/m3, PM25_EC,,PM25_EC' Value for AERO_25: 'EC,ug/m3, PM25_EC,,PM25_EC' Value for AERO_26: 'OC+OC_Blank+EC,ug/m3,PM25_OC+PM25_EC,,PM25_TC' Value for AERO_26: 'OC+OC_Blank+EC,ug/m3,PM25_OC+PM25_EC,,PM25_TC' Value for AERO_27: 'Fe,ug/m3, AFEJ,,Fe' Value for AERO_27: 'Fe,ug/m3, AFEJ,,Fe' Value for AERO_28: 'Al,ug/m3,AALJ,,Al' Value for AERO_28: 'Al,ug/m3,AALJ,,Al' Value for AERO_29: 'Si,ug/m3, ASIJ,,Si' Value for AERO_29: 'Si,ug/m3, ASIJ,,Si' Value for AERO_30: 'Ti,ug/m3, ATIJ,,Ti' Value for AERO_30: 'Ti,ug/m3, ATIJ,,Ti' Value for AERO_31: 'Ca,ug/m3,ACAJ,,Ca' Value for AERO_31: 'Ca,ug/m3,ACAJ,,Ca' Value for AERO_32: 'Mg,ug/m3,AMGJ,,Mg' Value for AERO_32: 'Mg,ug/m3,AMGJ,,Mg' Value for AERO_33: 'K,ug/m3,AKJ,,K' Value for AERO_33: 'K,ug/m3,AKJ,,K' Value for AERO_34: 'Mg,ug/m3,AMNJ,,Mn' Value for AERO_34: 'Mg,ug/m3,AMNJ,,Mn' Value for AERO_35: '2.2*Al+2.49*Si+1.63*Ca+2.42*Fe+1.94*Ti,ug/m3,ASOILJ,,soil' Value for AERO_35: '2.2*Al+2.49*Si+1.63*Ca+2.42*Fe+1.94*Ti,ug/m3,ASOILJ,,soil' Value for AERO_36: 'PM25-SO4-NO3-NH4-OC-EC-[Na]-[Cl]-2.2*Al-2.49*Si-1.63*Ca-2.42*Fe-1.94*Ti , ug/m3, AUNSPEC1IJ,,OTHER' Value for AERO_36: 'PM25-SO4-NO3-NH4-OC-EC-[Na]-[Cl]-2.2*Al-2.49*Si-1.63*Ca-2.42*Fe-1.94*Ti , ug/m3, AUNSPEC1IJ,,OTHER' Value for AERO_37: '0.8*OC,ug/m3, ANCOMIJ,,NCOM' Value for AERO_37: '0.8*OC,ug/m3, ANCOMIJ,,NCOM' Value for AERO_38: 'PM25-SO4-NO3-NH4-OC-EC-[Na]-[Cl]-2.2*Al-2.49*Si-1.63*Ca-2.42*Fe-1.94*Ti-0.8*OC,ug/m3, AUNSPEC2IJ,,OTHER_REM' Value for AERO_38: 'PM25-SO4-NO3-NH4-OC-EC-[Na]-[Cl]-2.2*Al-2.49*Si-1.63*Ca-2.42*Fe-1.94*Ti-0.8*OC,ug/m3, AUNSPEC2IJ,,OTHER_REM' Value for AERO_39 not defined; returning defaultval ': 'Not Used' Value for AERO_39 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/AQS_daily_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/AQS_daily_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Daily_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Daily_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network AQS_Daily Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: AQS_Daily Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Daily_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Daily_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network AQS_Daily Wrote site compare script for network AQS_Hourly Running site compare for network AQS_Hourly .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1: 'O3,ppb,O3,ppb,O3' Value for GAS_1: 'O3,ppb,O3,ppb,O3' Value for GAS_2: 'NO,ppb,NO,ppb,NO' Value for GAS_2: 'NO,ppb,NO,ppb,NO' Value for GAS_3: 'NOY,ppb,NOY,ppb,NOY' Value for GAS_3: 'NOY,ppb,NOY,ppb,NOY' Value for GAS_4: 'NO2,ppb,NO2,ppb,NO2' Value for GAS_4: 'NO2,ppb,NO2,ppb,NO2' Value for GAS_5: 'NOX,ppb,NO+NO2,ppb,NOX' Value for GAS_5: 'NOX,ppb,NO+NO2,ppb,NOX' Value for GAS_6: 'CO,ppb,CO,ppb,CO' Value for GAS_6: 'CO,ppb,CO,ppb,CO' Value for GAS_7: 'SO2,ppb,SO2,ppb,SO2' Value for GAS_7: 'SO2,ppb,SO2,ppb,SO2' Value for GAS_8: 'PM25,ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for GAS_8: 'PM25,ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for GAS_9: 'PM25,ug/m3,PMIJ_FRM,ug/m3,PM_FRM' Value for GAS_9: 'PM25,ug/m3,PMIJ_FRM,ug/m3,PM_FRM' Value for GAS_10: 'PM10,ug/m3,ATOTIJK,ug/m3,PM10' Value for GAS_10: 'PM10,ug/m3,ATOTIJK,ug/m3,PM10' Value for GAS_11: 'Isoprene,ppb,ISOP,ppb,Isoprene' Value for GAS_11: 'Isoprene,ppb,ISOP,ppb,Isoprene' Value for GAS_12: 'Ethylene,ppb,ETH,ppb,Ethylene' Value for GAS_12: 'Ethylene,ppb,ETH,ppb,Ethylene' Value for GAS_13: 'Ethane,ppb,ETHA,ppb,Ethane' Value for GAS_13: 'Ethane,ppb,ETHA,ppb,Ethane' Value for GAS_14: 'Toluene,ppb,TOL,ppb,Toluene' Value for GAS_14: 'Toluene,ppb,TOL,ppb,Toluene' Value for GAS_15: 'Temperature,C,SFC_TMP,C,SFC_TMP' Value for GAS_15: 'Temperature,C,SFC_TMP,C,SFC_TMP' Value for GAS_16: 'RH,%,RH,%,RH' Value for GAS_16: 'RH,%,RH,%,RH' Value for GAS_17: 'Wind_Speed,m/s,WSPD10,m/s,WSPD10' Value for GAS_17: 'Wind_Speed,m/s,WSPD10,m/s,WSPD10' Value for GAS_18: ',,PBLH,m,PBLH' Value for GAS_18: ',,PBLH,m,PBLH' Value for GAS_19: ',,SOL_RAD,watts/m2,Solar_Rad' Value for GAS_19: ',,SOL_RAD,watts/m2,Solar_Rad' Value for GAS_20: ',,10*precip,mm/hr,precip' Value for GAS_20: ',,10*precip,mm/hr,precip' Value for GAS_21: 'PM25,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for GAS_21: 'PM25,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for GAS_22: 'PM25,ug/m3,PM25_FRM,,PM25_FRM' Value for GAS_22: 'PM25,ug/m3,PM25_FRM,,PM25_FRM' Value for GAS_23 not defined; returning defaultval ': 'Not Used' Value for GAS_23 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/AQS_hourly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/AQS_hourly_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Hourly_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Hourly_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AQS >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network AQS_Hourly Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: AQS_Hourly Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Hourly_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AQS_Hourly_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network AQS_Hourly Wrote site compare script for network SEARCH_Daily Running site compare for network SEARCH_Daily .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'PM25_Tef_Sulfate [ug/m3],ug/m3,ASO4IJ,ug/m3,SO4' Value for AERO_1: 'PM25_Tef_Sulfate [ug/m3],ug/m3,ASO4IJ,ug/m3,SO4' Value for AERO_2: 'PM25_Tef_Nitrate [ug/m3],ug/m3,ANO3IJ,ug/m3,NO3' Value for AERO_2: 'PM25_Tef_Nitrate [ug/m3],ug/m3,ANO3IJ,ug/m3,NO3' Value for AERO_3: 'PM25_Tef_Ammonium [ug/m3],ug/m3,ANH4IJ,ug/m3,NH4' Value for AERO_3: 'PM25_Tef_Ammonium [ug/m3],ug/m3,ANH4IJ,ug/m3,NH4' Value for AERO_4: 'PM25_Total_Nitrate [ug/m3],ug/m3,ANO3IJ+HNO3_UGM3,ug/m3,TNO3' Value for AERO_4: 'PM25_Total_Nitrate [ug/m3],ug/m3,ANO3IJ+HNO3_UGM3,ug/m3,TNO3' Value for AERO_5: 'PM25_Tef_Sodium [ug/m3],ug/m3,ANAIJ,ug/m3,Na' Value for AERO_5: 'PM25_Tef_Sodium [ug/m3],ug/m3,ANAIJ,ug/m3,Na' Value for AERO_6: 'OCTC [ug/m3],ug/m3,AOCIJ,ug/m3,OC' Value for AERO_6: 'OCTC [ug/m3],ug/m3,AOCIJ,ug/m3,OC' Value for AERO_7: 'ECTC [ug/m3],ug/m3,AECIJ,ug/m3,EC' Value for AERO_7: 'ECTC [ug/m3],ug/m3,AECIJ,ug/m3,EC' Value for AERO_8: 'FRM PM2.5 Mass [ug/m3],ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for AERO_8: 'FRM PM2.5 Mass [ug/m3],ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for AERO_9: 'PM25_Tef_Sulfate [ug/m3],ug/m3,PM25_SO4,ug/m3,PM25_SO4' Value for AERO_9: 'PM25_Tef_Sulfate [ug/m3],ug/m3,PM25_SO4,ug/m3,PM25_SO4' Value for AERO_10: 'PM25_Tef_Nitrate [ug/m3],ug/m3,PM25_NO3,ug/m3,PM25_NO3' Value for AERO_10: 'PM25_Tef_Nitrate [ug/m3],ug/m3,PM25_NO3,ug/m3,PM25_NO3' Value for AERO_11: 'PM25_Tef_Ammonium [ug/m3],ug/m3,PM25_NH4,ug/m3,PM25_NH4' Value for AERO_11: 'PM25_Tef_Ammonium [ug/m3],ug/m3,PM25_NH4,ug/m3,PM25_NH4' Value for AERO_12: 'PM25_Total_Nitrate [ug/m3],ug/m3,PM25_NO3+HNO3_UGM3,ug/m3,PM25_TNO3' Value for AERO_12: 'PM25_Total_Nitrate [ug/m3],ug/m3,PM25_NO3+HNO3_UGM3,ug/m3,PM25_TNO3' Value for AERO_13: 'PM25_Tef_Sodium [ug/m3],ug/m3,PM25_NA,ug/m3,PM25_Na' Value for AERO_13: 'PM25_Tef_Sodium [ug/m3],ug/m3,PM25_NA,ug/m3,PM25_Na' Value for AERO_14: 'OCTC [ug/m3],ug/m3,PM25_OC,ug/m3,PM25_OC' Value for AERO_14: 'OCTC [ug/m3],ug/m3,PM25_OC,ug/m3,PM25_OC' Value for AERO_15: 'ECTC [ug/m3],ug/m3,PM25_EC,ug/m3,PM25_EC' Value for AERO_15: 'ECTC [ug/m3],ug/m3,PM25_EC,ug/m3,PM25_EC' Value for AERO_16: 'FRM PM2.5 Mass [ug/m3],ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_16: 'FRM PM2.5 Mass [ug/m3],ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_17: 'XRF Al [ug/m3],ug/m3,AALJ,ug/m3,Al' Value for AERO_17: 'XRF Al [ug/m3],ug/m3,AALJ,ug/m3,Al' Value for AERO_18: 'XRF Si [ug/m3],ug/m3,ASIJ,ug/m3,Si' Value for AERO_18: 'XRF Si [ug/m3],ug/m3,ASIJ,ug/m3,Si' Value for AERO_19: 'XRF K [ug/m3],ug/m3,AKJ,ug/m3,K' Value for AERO_19: 'XRF K [ug/m3],ug/m3,AKJ,ug/m3,K' Value for AERO_20: 'XRF Ca [ug/m3],ug/m3,ACAJ,ug/m3,Ca' Value for AERO_20: 'XRF Ca [ug/m3],ug/m3,ACAJ,ug/m3,Ca' Value for AERO_21: 'XRF Ti [ug/m3],ug/m3,ATIJ,ug/m3,Ti' Value for AERO_21: 'XRF Ti [ug/m3],ug/m3,ATIJ,ug/m3,Ti' Value for AERO_22: 'XRF Mn [ug/m3],ug/m3,AMNJ,ug/m3,Mn' Value for AERO_22: 'XRF Mn [ug/m3],ug/m3,AMNJ,ug/m3,Mn' Value for AERO_23: 'XRF Fe [ug/m3],ug/m3,AFEJ,ug/m3,Fe' Value for AERO_23: 'XRF Fe [ug/m3],ug/m3,AFEJ,ug/m3,Fe' Value for AERO_24 not defined; returning defaultval ': 'Not Used' Value for AERO_24 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/SEARCH_daily_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/SEARCH_daily_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/SEARCH_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/SEARCH_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/SEARCH_Daily_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/SEARCH_Daily_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/SEA >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network SEARCH_Daily Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: SEARCH_Daily Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/SEARCH_Daily_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/SEARCH_Daily_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network SEARCH_Daily Wrote site compare script for network SEARCH_Hourly Running site compare for network SEARCH_Hourly .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'Average O3[ppb],ppb,O3,,O3' Value for AERO_1: 'Average O3[ppb],ppb,O3,,O3' Value for AERO_2: 'Average CO[ppb],ppb,CO,,CO' Value for AERO_2: 'Average CO[ppb],ppb,CO,,CO' Value for AERO_3: 'Average SO2[ppb],ppb,SO2,,SO2' Value for AERO_3: 'Average SO2[ppb],ppb,SO2,,SO2' Value for AERO_4: 'Average NO[ppb],ppb,NO,,NO' Value for AERO_4: 'Average NO[ppb],ppb,NO,,NO' Value for AERO_5: 'Average NO2[ppb],ppb,NO2,,NO2' Value for AERO_5: 'Average NO2[ppb],ppb,NO2,,NO2' Value for AERO_6: 'Average NOy[ppb],ppb,NOY,ppb,NOY' Value for AERO_6: 'Average NOy[ppb],ppb,NOY,ppb,NOY' Value for AERO_7: 'Average HNO3[ppb],ppb,HNO3,ppb,HNO3' Value for AERO_7: 'Average HNO3[ppb],ppb,HNO3,ppb,HNO3' Value for AERO_8: 'Average NH3[ppb],ug/m3,NH3,,NH3' Value for AERO_8: 'Average NH3[ppb],ug/m3,NH3,,NH3' Value for AERO_9: 'Average OptEC[ug/m3],ug/m3,AECIJ,ug/m3,EC' Value for AERO_9: 'Average OptEC[ug/m3],ug/m3,AECIJ,ug/m3,EC' Value for AERO_10: 'Average OC[ug/m3],ug/m3,AOCIJ,ug/m3,OC' Value for AERO_10: 'Average OC[ug/m3],ug/m3,AOCIJ,ug/m3,OC' Value for AERO_11: 'Average TC[ug/m3],ug/m3,AECIJ+AOCIJ,ug/m3,TC' Value for AERO_11: 'Average TC[ug/m3],ug/m3,AECIJ+AOCIJ,ug/m3,TC' Value for AERO_12: 'Average WSP[m/s],m/s,WSPD10,m/s,WSPD10' Value for AERO_12: 'Average WSP[m/s],m/s,WSPD10,m/s,WSPD10' Value for AERO_13: 'Average WDR[Deg],m/s,WDIR10,m/s,WDIR10' Value for AERO_13: 'Average WDR[Deg],m/s,WDIR10,m/s,WDIR10' Value for AERO_14: 'Average RH[%],%,RH,%,RH' Value for AERO_14: 'Average RH[%],%,RH,%,RH' Value for AERO_15: 'Average TEMP[Deg C],C,SFC_TMP,C,SFC_TMP' Value for AERO_15: 'Average TEMP[Deg C],C,SFC_TMP,C,SFC_TMP' Value for AERO_16: '25.4*Average RAINFALL[Inches],mm,precip,mm,precip' Value for AERO_16: '25.4*Average RAINFALL[Inches],mm,precip,mm,precip' Value for AERO_17: 'Average SR[W/m2],w/m2,SOL_RAD,watts/m2,Solar_Rad' Value for AERO_17: 'Average SR[W/m2],w/m2,SOL_RAD,watts/m2,Solar_Rad' Value for AERO_18: 'Average TEOM[ug/m3],ug/m3,ATOTIJ,,PM_TOT' Value for AERO_18: 'Average TEOM[ug/m3],ug/m3,ATOTIJ,,PM_TOT' Value for AERO_19: 'Average NH4[ug/m3],ug/m3,ANH4IJ,,NH4' Value for AERO_19: 'Average NH4[ug/m3],ug/m3,ANH4IJ,,NH4' Value for AERO_20: 'Average SO4[ug/m3],ug/m3,ASO4IJ,,SO4' Value for AERO_20: 'Average SO4[ug/m3],ug/m3,ASO4IJ,,SO4' Value for AERO_21: 'Average OptEC[ug/m3],ug/m3,PM25_EC,ug/m3,PM25_EC' Value for AERO_21: 'Average OptEC[ug/m3],ug/m3,PM25_EC,ug/m3,PM25_EC' Value for AERO_22: 'Average OC[ug/m3],ug/m3,PM25_OC,ug/m3,PM25_OC' Value for AERO_22: 'Average OC[ug/m3],ug/m3,PM25_OC,ug/m3,PM25_OC' Value for AERO_23: 'Average TC[ug/m3],ug/m3,PM25_EC+PM25_OC,ug/m3,PM25_TC' Value for AERO_23: 'Average TC[ug/m3],ug/m3,PM25_EC+PM25_OC,ug/m3,PM25_TC' Value for AERO_24: 'Average NH4[ug/m3],ug/m3,PM25_NH4,,PM25_NH4' Value for AERO_24: 'Average NH4[ug/m3],ug/m3,PM25_NH4,,PM25_NH4' Value for AERO_25: 'Average NO3[ug/m3],ug/m3,PM25_NO3,,PM25_NO3' Value for AERO_25: 'Average NO3[ug/m3],ug/m3,PM25_NO3,,PM25_NO3' Value for AERO_26: 'Average SO4[ug/m3],ug/m3,PM25_SO4,,PM25_SO4' Value for AERO_26: 'Average SO4[ug/m3],ug/m3,PM25_SO4,,PM25_SO4' Value for AERO_27 not defined; returning defaultval ': 'Not Used' Value for AERO_27 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/SEARCH_hourly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/SEARCH_hourly_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/SEARCH_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/SEARCH_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/SEARCH_Hourly_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/SEARCH_Hourly_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/SEA >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network SEARCH_Hourly Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: SEARCH_Hourly Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/SEARCH_Hourly_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/SEARCH_Hourly_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network SEARCH_Hourly Wrote site compare script for network AERONET Running site compare for network AERONET .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'AOT_340,none,SW_AOD_340,none,AOD_340' Value for AERO_1: 'AOT_340,none,SW_AOD_340,none,AOD_340' Value for AERO_2: 'AOT_380,none,SW_AOD_380,none,AOD_380' Value for AERO_2: 'AOT_380,none,SW_AOD_380,none,AOD_380' Value for AERO_3: 'AOT_440,none,SW_AOD_440,none,AOD_440' Value for AERO_3: 'AOT_440,none,SW_AOD_440,none,AOD_440' Value for AERO_4: 'AOT_500,none,SW_AOD_500,none,AOD_500' Value for AERO_4: 'AOT_500,none,SW_AOD_500,none,AOD_500' Value for AERO_5: 'AOT_555,none,SW_AOD_555,none,AOD_555' Value for AERO_5: 'AOT_555,none,SW_AOD_555,none,AOD_555' Value for AERO_6: 'AOT_675,none,SW_AOD_675,none,AOD_675' Value for AERO_6: 'AOT_675,none,SW_AOD_675,none,AOD_675' Value for AERO_7: 'AOT_870,none,SW_AOD_870,none,AOD_870' Value for AERO_7: 'AOT_870,none,SW_AOD_870,none,AOD_870' Value for AERO_8: 'AOT_1020,none,SW_AOD_1020,none,AOD_1020' Value for AERO_8: 'AOT_1020,none,SW_AOD_1020,none,AOD_1020' Value for AERO_9: 'AOT_1640,none,SW_AOD_1640,none,AOD_1640' Value for AERO_9: 'AOT_1640,none,SW_AOD_1640,none,AOD_1640' Value for AERO_10 not defined; returning defaultval ': 'Not Used' Value for AERO_10 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/AERONET_hourly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/AERONET_hourly_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AERONET_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AERONET_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AERONET_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AERONET_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/AER >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network AERONET Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: AERONET Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AERONET_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/AERONET_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network AERONET Wrote site compare script for network NAPS Running site compare for network NAPS .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for CHAR_1 not defined; returning defaultval ': 'Not Used' Value for AERO_1: 'O3,ppb,O3,ppb,O3' Value for AERO_1: 'O3,ppb,O3,ppb,O3' Value for AERO_2: 'TEOMPM25,ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for AERO_2: 'TEOMPM25,ug/m3,ATOTIJ,ug/m3,PM_TOT' Value for AERO_3: 'TEOMPM10,ug/m3,ATOTIJK,ug/m3,PM10' Value for AERO_3: 'TEOMPM10,ug/m3,ATOTIJK,ug/m3,PM10' Value for AERO_4: 'CO,ppb,CO,ppb,CO' Value for AERO_4: 'CO,ppb,CO,ppb,CO' Value for AERO_5: 'NO,ppb,NO,ppb,NO' Value for AERO_5: 'NO,ppb,NO,ppb,NO' Value for AERO_6: 'NO2,ppb,NO2,ppb,NO2' Value for AERO_6: 'NO2,ppb,NO2,ppb,NO2' Value for AERO_7: 'NOX,ppb,NO+NO2,ppb,NOX' Value for AERO_7: 'NOX,ppb,NO+NO2,ppb,NOX' Value for AERO_8: 'SO2,ppb,SO2,ppb,SO2' Value for AERO_8: 'SO2,ppb,SO2,ppb,SO2' Value for AERO_9: 'TEOMPM25,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_9: 'TEOMPM25,ug/m3,PM25_TOT,ug/m3,PM25_TOT' Value for AERO_10 not defined; returning defaultval ': 'Not Used' Value for AERO_10 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for GAS_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETDEP_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for WETCON_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for PREC_1 not defined; returning defaultval ': 'Not Used' Value for TABLE_TYPE: 'CASTNET' Value for TABLE_TYPE: 'CASTNET' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/NAPS_hourly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/NAPS_hourly_data_2010.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NAPS_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NAPS_full_site_list.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NAPS_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NAPS_PXM_LandUse_AQ.csv' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for APPLY_DLS: N returning FALSE Value for PRECIP: 'RT' Value for PRECIP: 'RT' Value for MISSING: '-999' Value for MISSING: '-999' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated *** ERROR ABORT in subroutine FL_TYP1 Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NAP >>----> Program sitecmp (Version 1.0) <----<< Finished running site compare for network NAPS Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: NAPS Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NAPS_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NAPS_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network NAPS Wrote site compare script for network NAPS_Daily_O3 Running site compare for network NAPS_Daily_O3 .Depending on length of time being extracted, this may take a while This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2019 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.7.0 of Oct 30 2019 12:37:17 $ Missing environment variable EXECUTION_ID Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_1: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_2: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for M3_FILE_3 not defined; returning defaultval ': ' ' Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "M3_FILE_1" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201003.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2010069:180000 (18:00:00 March 10, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 528 "M3_FILE_2" opened as OLD:READ-ONLY File name "/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/COMBINE_ACONC_v531_gcc_2010_30_PXMLandUse_201004.nc" File type GRDDED3 Execution ID "????????????????" Grid name "2010_30_PXMLandU" Dimensions: 77 rows, 77 cols, 1 lays, 134 vbles NetCDF ID: 131072 opened as READONLY Starting date and time 2010091:180000 (18:00:00 April 1, 2010) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 240 Value for OBS_FACTOR: 1 Value for OZONE: '1*O3,ppb' Value for OZONE: '1*O3,ppb' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/NAPS_hourly_data_2010.csv' Value for IN_TABLE: '/home/pkasper/AMET_v14/obs/AQ/2010/2010/NAPS_hourly_data_2010.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NAPS_Daily_O3_PXM_LandUse_AQ.csv' Value for OUT_TABLE: '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NAPS_Daily_O3_PXM_LandUse_AQ.csv' Value for OBS_SPECIES: 'O3' Value for OBS_SPECIES: 'O3' Value for START_DATE: 2010069 Value for START_TIME: 0 Value for END_DATE: 2010090 Value for END_TIME: 230000 Value for TIME_SHIFT: 0 Value for HOURS_8HRMAX: 24 Value for APPLY_DLS: N returning FALSE Value for LAMBXY: N returning FALSE Value for MISSING: '-999' Value for MISSING: '-999' Value for QA_FLAG_CHECK: N returning FALSE Value for FILL_MISSING not defined;returning default: FALSE Value for MISS_CHECK not defined;returning default: TRUE Value for PARTIAL_DAY: 'Y' Value for PARTIAL_DAY: 'Y' Multiple Models-3 files being used Files being checked for consistent header data Differences found between files M3_FILE_1 and M3_FILE_2 NONE Multiple CTM Concentration files being used Duplicate time steps will be eliminated Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NAPS_full_site_list.csv' Value for SITE_FILE: '/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NAPS_full_site_list.csv' *** ERROR ABORT in subroutine LOAD_SITES Cannot open site file:/home/pkasper/AMET_v14/obs/AQ/2010/site_metadata_files/NAP Finished running site compare for network NAPS_Daily_O3 Loading required package: RMySQL Loading required package: DBI Project_ID: PXM_LandUse_AQ Network: NAPS_Daily_O3 Sitex File: /home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NAPS_Daily_O3_PXM_LandUse_AQ.csv MySQL Server: localhost Error in file(file, "rt") : cannot open the connection Calls: read.csv -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '/home/pkasper/AMET_v14/output/v531_gcc_2010_30_PXMLandUse/sitex_output/201003/NAPS_Daily_O3_PXM_LandUse_AQ.csv': No such file or directory Execution halted Finshed populating database for network NAPS_Daily_O3