#!/bin/csh -f
#
#=================================================================================================
#=====                                                                                       =====
#=====  Speciation Tool Version 4.5         Sep 2017                                        =====
#=====                                                                                       =====
#=====  Description:                                                                         =====
#=====  This Assigns file defines the environment variables used by the Speciation Tool.     =====
#=====                                                                                       =====
#=====  Usage:                                                                               =====
#=====  	source <AssignFile>                                                          =====
#=====                                                                                       =====
#=================================================================================================
#
# <SYSTEM INSTALLATION DEPENDENT>
# <PostgreSQL>
#
# In order to access PostgreSQL you may need to set a pathname, username, and/or password.
# This is installation dependent.  If you have database connection errors when running
# the Speciation Tool see your system administrator for access to postgreSQL.
#
# POSTGRES_BIN can be set to override the default. The result of "which psql" will be used if 
#              the environment variable is not set.  
# setenv POSTGRES_BIN	/usr/local/pgsql		#  directory of postgreSQL execuatable

# LD_LIBRARY_PATH may be required if PosrgreSQL is not installed in your path.
# setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:fullpath_name

# SPTOOL_USER is the PostreSQL user name.  This can be set to override the default. 
#             The results of "whoami" will be used if the environment variable is not set. 
#             (Not needed for a typical installation).
# setenv SPTOOL_USER	userName			# Postgres user name

# SPTOOL_PWD can be set if your PostgreSQL installation is password protected. 
#            Only set if required on your system.
# setenv SPTOOL_PWD	dbPWD				# PostgreSQL password

#<Perl>
#
# PERL_BIN can be set to override the default.  The directory of "which perl" will be used if 
#          the environment variable is not set.  (Not needed for a typical installation).
# setenv PERL_BIN /usr/bin				# directory of Perl executable

# PERL_DBI must be set.  This is the Perl database interface and is system dependent.
#          Typical Postgres options include "PgPP" or "Pg" (case sensitive).

setenv PERL_DBI Pg		# Perl/Postgres interface must be set !!!!!

#=================================================================================================

# <Speciation Tool INSTALLATION DEPENDENT>   
#
# SPTOOL_HOME must be set to the location of the Speciation Tool home directory. This is the
#             full pathname of where the Speciation Tool will be installed.
#             (The directory where init_sptooldb_v3.2.csh resides).
setenv SPTOOL_HOME	/home/farzad/SPTOOL/Speciation-Tool-Speciation_Tool_5.0 	# Speciation Tool top level directory

setenv SPTOOL_SRC_HOME	$SPTOOL_HOME/src		# Speciation Tool source code directory

setenv SPTOOL_DB	sptoolv5_0alpha_t1			# Speciation Tool Database name 


# <Speciation Tool 'shared' schema input directory and default data files>
#
setenv IDIR		$SPTOOL_HOME/import_data	# input data directory
#
setenv MECHANISM                $IDIR/mechanism_forImport_11Feb2020_speciate5_0_withSOAALK_13mar2020_v0.csv
setenv MECHANISMPM		$IDIR/mech_pm_ae5_ae6_ae8.txt
setenv MECHANISM_DESCRIPTION	$IDIR/sptool_mechanism_description_speciate5_0_04mar2020_v0.csv
setenv CARBONS			$IDIR/carbons_all_mechanisms_speciate5_0_04mar2020_v0.csv
setenv INVTABLE			$IDIR/invtable_hapcap_cb05soa_25may2011_v13.txt
setenv PROFILES_STATIC		$IDIR/static_19aug07.csv
setenv SPECIES_RENAME		$IDIR/aqm_poll_rename.csv
setenv CAMX_FCRS                $IDIR/camx_fcrs.profile.lst
setenv VBS_SVOC_FACTORS         $IDIR/vbs_svoc.profile.26sep2016.csv
setenv VBS_IVOC_FACTORS         $IDIR/vbs_ivoc.profile.30aug2016.csv 
setenv IVOC_SPECIES             $IDIR/ivoc_species.csv
setenv O2M_RATIOS		$IDIR/oxygen_metal_Ratios.csv		# added Sep 2018

# updated with SPECIATE 5.0
setenv PROFILES_RAW  $IDIR/speciate5.0_exports/export_profiles_2019_0826.txt
setenv WEIGHTS_RAW  $IDIR/speciate5.0_exports/export_species_2019_0826.txt
setenv SPECIES_PROPERTIES_RAW  $IDIR/speciate5.0_exports/export_species_properties_2020_0313.txt