#!/bin/csh 

#  generates a new concentration file from output from the CMAQ model run
set OUTDIR = ./outputs #/acme5/ADEQ_AR_2020/camx/postproc/combine/outputs
set stday = (20160701)
set enday = (20160703)

foreach i (1)
foreach grd (grd02)# grd01)
  set EXEC=./srcT1/T1combine.exe
  setenv SPECIES_DEF /root/Documents/combine/spec_def/spec_def.camx.avrg # spec_def.PM_MATS_willow.txt

  foreach scen (ADEQ_AR_2020) #(basecase alt1_control)
    if ( ! -d $OUTDIR ) mkdir -p $OUTDIR
    setenv PROMPTFLAG F

    #foreach metric ( grand_avg_PM25 )
    set  gday  = $stday[$i]
    set  ENDAY = ($enday[$i])

    while ($gday <= $ENDAY)
 
      set jday = `date -d $gday +%Y%j` # Converts to julian day
      echo $gday  $jday

      setenv OUTFILE $OUTDIR/camxv7_cb6r4DMS.ADEQ_AR_2020.$jday.$scen.avrg.$grd.nc 
      if ( ! -d $OUTDIR/ ) mkdir -p $OUTDIR/
      rm -rf $OUTFILE

      setenv INFILE1 /root/Documents/camx2ioapi/output/camxv7_cb6r4DMS.$gday.2016v1.avrg.$grd.nc #/acme5/ADEQ_AR_2020/camx/postproc/camx2ioapi/output/camxv7_cb6r4DMS.$caldate.2016v1.avrg.$grd.nc
      echo $INFILE1
      ${EXEC}
      
      set gday = `date -d "$gday+ 1 day" +%Y%m%d`
    end #while
  end #scen
end #grd
end # i