Start Model Run At Thu Feb 6 15:42:35 EST 2020 Compiler is set to intel Intel(R) Parallel Studio XE 2018 Update 3 for Linux* Copyright (C) 2009-2018 Intel Corporation. All rights reserved. Working Directory is /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/CCTM/scripts Build Directory is /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/CCTM/scripts/BLD_CCTM_v531_intel Output Directory is /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/data/output_CCTM_v531_intel_Bench_2016_12SE1 Log Directory is /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/data/output_CCTM_v531_intel_Bench_2016_12SE1/LOGS Executable Name is CCTM_v531.exe ---CMAQ EXECUTION ID: CMAQ_CCTMv531_xr32_20200206_204235_878157365 --- Set up input and output files for Day 2016-07-01. Existing Logs and Output Files for Day 2016-07-01 Will Be Deleted /bin/rm: No match. CMAQ Processing of Day 20160701 Began at Thu Feb 6 15:42:36 EST 2020 srun: job 90511443 queued and waiting for resources srun: job 90511443 has been allocated resources CTM_APPL | v531_intel_Bench_2016_12SE1_20160701 ================================================================================ | | | The Community Multiscale Air Quality (CMAQ) Model | | Version 5.3.1 | | | | Built and Maintained by the | | Office of Research and Development | | United States Environmental Protection Agency | | | | https://www.epa.gov/cmaq | | | | Source Code: https://www.github.com/USEPA/cmaq/tree/master | | Documentation: https://www.github.com/USEPA/cmaq/tree/master/DOCS | | | | The CMAQ Model is tested and released with cooperation from | | the Community Modeling and Analysis System (CMAS) Center via | | contract support. CMAS is managed by the Institute for the | | Environment, University of North Carolina at Chapel Hill. | | CMAS URL: (https://www.cmascenter.org) | | | ================================================================================ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ IOCPL version 3.2-cpl-mpi of Jun 21 2018 22:07:49 $ PVM version 3.4.6 MPI/PnetCDF parallel-I/O enabled PnetCDF Library Version "1.9.0 of 19 Dec 2017" netCDF version 4.6.1 of May 22 2018 16:36:04 $ =========================================== |>--- ENVIRONMENT VARIABLE REPORT ---<| =========================================== |> Grid and High-Level Model Parameters: +========================================= --Env Variable-- | --Value-- -------------------------------------------------------------------------------- BLD | (default) OUTDIR | /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/data/output_CCTM_v531_intel_Bench_2016_12SE1 NEW_START | T ISAM_NEW_START | Y (default) GRID_NAME | 2016_12SE1 CTM_TSTEP | 10000 CTM_RUNLEN | 240000 CTM_PROGNAME | DRIVER (default) CTM_STDATE | 2016183 CTM_STTIME | 0 CTM_MAXSYNC | 300 CTM_MINSYNC | 60 |> Multiprocess control, output and error checking: +==================================================== --Env Variable-- | --Value-- -------------------------------------------------------------------------------- PRINT_PROC_TIME | T FL_ERR_STOP | F CTM_CKSUM | T AVG_FILE_ENDTIME | F AVG_CONC_SPCS | ALL CONC_SPCS | O3 NO ANO3I ANO3J NO2 FORM ISOP NH3 ANH4I ANH4J ASO4I ASO4J ACONC_BLEV_ELEV | 1 1 CONC_BLEV_ELEV | 1 1 IOAPI_LOG_WRITE | F VERTEXT | F gc_matrix_nml | /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/CCTM/scripts/BLD_CCTM_v531_intel/GC_cb6r3_ae7_aq.nml ae_matrix_nml | /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/CCTM/scripts/BLD_CCTM_v531_intel/AE_cb6r3_ae7_aq.nml nr_matrix_nml | /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/CCTM/scripts/BLD_CCTM_v531_intel/NR_cb6r3_ae7_aq.nml tr_matrix_nml | /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/CCTM/scripts/BLD_CCTM_v531_intel/Species_Table_TR_0.nml |> Chemistry and Photolysis: +============================= --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CTM_PHOTDIAG | F CORE_SHELL_OPTIC | F (default) OPTICS_MIE_CALC | F (default) GEAR_ATOL | 0.100E-08 (default) GEAR_RTOL | 0.100E-02 (default) RB_RTOL | 0.100E-02 (default) RB_ATOL | 0.100E-06 (default) |> Aerosols: +============= --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CTM_AVISDIAG | F (default) CTM_ZERO_PCSOA | F (default) CTM_AOD | F (default) CTM_PMDIAG | F CTM_APMDIAG | T APMDIAG_BLEV_ELE | 1 1 AVG_PMDIAG_SPCS | (default) STM_SO4TRACK | F |> Cloud Processes: +==================== --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CLD_DIAG | F |> Air-Surface Exchange Processes: +=================================== --Env Variable-- | --Value-- -------------------------------------------------------------------------------- PX_VERSION | T CTM_ABFLUX | T CTM_MOSAIC | F CTM_SFC_HONO | T CLM_VERSION | F NOAH_VERSION | F CTM_STAGE | F (default) CTM_DEPV_FILE | F CTM_HGBIDI | F CTM_BIDI_FERT_NH | T CTM_WBDUST_BELD | BELD3 |> Transport Processes: +======================== --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CTM_VDIFF_DIAG_F | F (default) SIGMA_SYNC_TOP | 0.700E+00 ADV_HDIV_LIM | 0.900E+00 (default) CTM_ADV_CFL | 0.950E+00 KZMIN | T CTM_WVEL | T CTM_GRAV_SETL | T |> Emissions Parameters: +========================= --Env Variable-- | --Value-- -------------------------------------------------------------------------------- EMISSCTRL_NML | /scratch/panosg/gscratch/CMAQ5.3.1/CMAQ-5.3.1/CCTM/scripts/BLD_CCTM_v531_intel/EmissCtrl_cb6r3_ae7_aq.nml CTM_EMLAYS | 0 (default) N_EMIS_GR | 2 N_EMIS_TR | 0 (default) CTM_EMISCHK | F CTM_BIOGEMIS | T BIOG_SPRO | DEFAULT (default) BIOSW_YN | T B3GTS_DIAG | F CTM_MGEMDIAG | F (default) CTM_OCEAN_CHEM | T CTM_WB_DUST | F CTM_DUSTEM_DIAG | F CTM_SSEMDIAG | F CTM_LTNG_NO | F LTNG_ASSIM_DT | 0 (default) LTNGNO | InLine (default) USE_NLDN | F (default) LTNGDIAG | F MOLSNCG | 0.350E+03 (default) MOLSNIC | 0.350E+03 (default) N_EMIS_PT | 8 IPVERT | 0 (default) EMISDIAG | F EMIS_SYM_DATE | F |> Process Analysis Parameters: +================================ --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CTM_PROCAN | F PA_BCOL_ECOL | (default) PA_BROW_EROW | (default) PA_BLEV_ELEV | (default) MET data determined based on WRF ARM version 3.8 ================================ |>--- TIME INTEGRATION ---<| ================================ Processing Day/Time [YYYYDDD:HHMMSS]: 2016183:000000 Which is Equivalent to (UTC): 0:00:00 Friday, July 1, 2016 Time-Step Length (HHMMSS): 000500 VDIFF completed... 8.6 seconds COUPLE completed... 0.2 seconds HADV completed... 1.4 seconds ZADV completed... 0.9 seconds forrtl: severe (174): SIGSEGV, segmentation fault occurred Image PC Routine Line Source CCTM_v531.exe 000000000096F19D Unknown Unknown Unknown libpthread-2.17.s 00007FA4BB9D95F0 Unknown Unknown Unknown CCTM_v531.exe 00000000005FDC03 Unknown Unknown Unknown CCTM_v531.exe 0000000000601557 Unknown Unknown Unknown CCTM_v531.exe 00000000006057FA Unknown Unknown Unknown CCTM_v531.exe 00000000005CEEEB Unknown Unknown Unknown CCTM_v531.exe 00000000005C7F48 Unknown Unknown Unknown CCTM_v531.exe 00000000005C695B Unknown Unknown Unknown CCTM_v531.exe 00000000004168DE Unknown Unknown Unknown libc-2.17.so 00007FA4BAF41505 __libc_start_main Unknown Unknown CCTM_v531.exe 00000000004167E9 Unknown Unknown Unknown srun: error: hal0133: task 0: Exited with exit code 174 0.048u 0.024s 0:16.13 0.3% 0+0k 0+0io 0pf+0w Thu Feb 6 15:42:52 EST 2020 tail: cannot open 'buff_CMAQ_CCTMv531_xr32_20200206_204235_878157365.txt' for reading: No such file or directory ************************************************************** ** Runscript Detected an Error: CGRID file was not written. ** ** This indicates that CMAQ was interrupted or an issue ** ** exists with writing output. The runscript will now ** ** abort rather than proceeding to subsequent days. ** ************************************************************** (standard_in) 2: syntax error (standard_in) 1: syntax error (standard_in) 1: syntax error ================================== ***** CMAQ TIMING REPORT ***** ================================== Start Day: 2016-07-01 End Day: 2016-07-01 Number of Simulation Days: 1 Domain Name: 2016_12SE1 Number of Grid Cells: 280000 (ROW x COL x LAY) Number of Layers: 35 Number of Processes: 1 All times are in seconds. Num Day Wall Time 01 2016-07-01 Total Time = Avg. Time =