Compiler is set to gcc model CCTM_36km.exe; repo /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/src; mechanism cb05e51_ae6_aq; lib_base /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/lib/x86_64/gcc7.3.0; lib_1 ioapi/modules; lib_2 ioapi/include_files; lib_3 "mpi -I."; lib_4 ioapi/lib; cpp_flags " -Dparallel -DSUBST_BARRIER=SE_BARRIER -DSUBST_GLOBAL_MAX=SE_GLOBAL_MAX -DSUBST_GLOBAL_MIN=SE_GLOBAL_MIN -DSUBST_GLOBAL_MIN_DATA=SE_GLOBAL_MIN_DATA -DSUBST_GLOBAL_TO_LOCAL_COORD=SE_GLOBAL_TO_LOCAL_COORD -DSUBST_GLOBAL_SUM=SE_GLOBAL_SUM -DSUBST_GLOBAL_LOGICAL=SE_GLOBAL_LOGICAL -DSUBST_LOOP_INDEX=SE_LOOP_INDEX -DSUBST_SUBGRID_INDEX=SE_SUBGRID_INDEX -DSUBST_HI_LO_BND_PE=SE_HI_LO_BND_PE -DSUBST_SUM_CHK=SE_SUM_CHK -DSUBST_INIT_ARRAY=SE_INIT_ARRAY -DSUBST_COMM=SE_COMM -DSUBST_MY_REGION=SE_MY_REGION -DSUBST_SLICE=SE_SLICE -DSUBST_GATHER=SE_GATHER -DSUBST_DATA_COPY=SE_DATA_COPY -DSUBST_IN_SYN=SE_IN_SYN"; f_compiler mpifort; fstd "-O3 -funroll-loops -finit-character=32 -Wtabs -Wsurprising"; dbg "-Wall -O0 -g -fcheck=all -ffpe-trap=invalid,zero,overflow -fbacktrace"; f_flags "-ffixed-form -ffixed-line-length-132 -funroll-loops -finit-character=32"; f90_flags "-ffree-form -ffree-line-length-none -funroll-loops -finit-character=32"; c_compiler gcc; c_flags "-O2 -DFLDMN -I"; link_flags "-fopenmp"; ioapi "-lioapi"; netcdf "-lnetcdff -lnetcdf"; mpich " "; include SUBST_PE_COMM ./PE_COMM.EXT; include SUBST_CONST ./CONST.EXT; include SUBST_FILES_ID ./FILES_CTM.EXT; include SUBST_EMISPRM ./EMISPRM.EXT; // Parallel / Include message passing definitions include SUBST_MPI ./mpif.h; // options are stenex or se_noop Module STENEX/se; // parallel executable; stenex and pario included Module PARIO; // options are par, par_nodistr and par_noop Module par/mpi; // options are wrf and yamo Module driver/wrf; // options are cartesian Module grid/cartesian; // options are yamo Module init/yamo; // options are gencoor_wrf and gencoor Module couple/gencoor_wrf; // options are yamo Module hadv/yamo; // options are wrf and yamo Module vadv/wrf; // options are multiscale Module hdiff/multiscale; // options are acm2 Module vdiff/acm2; // options are m3dry Module depv/m3dry; // options are emis Module emis/emis; // options are beis3 Module biog/beis3; // options are smoke Module plrise/smoke; // options are cgrid_spcs_nml and cgrid_spcs_icl Module spcs/cgrid_spcs_nml; // options are inline and table Module phot/inline; // gas chemistry solvers // options are smvgear, ros3, and ebi_; see 'gas chemistry mechanisms' for Module gas/ebi_cb05e51_ae6_aq; // gas chemistry mechanisms // options are cb05e51_ae6_aq, cb05e51_ae6nvPOA_aq, cb05eh51_ae6_aq, cb05mp51_ae6_aq, cb05tucl_ae6_aq, cb05tump_ae6_aq, cb6r3_ae6_aq, cb6r3_ae6nvPOA_aq, racm2_ae6_aq, saprc07tb_ae6_aq, saprc07tc_ae6_aq, saprc07tc_ae6nvPOA_aq, saprc07tic_ae6i_aq, saprc07tic_ae6i_aqkmti, saprc07tic_ae6invPOA_aq Module MECHS/cb05e51_ae6_aq; // tracer modules // options are trac0, trac1 Module MECHS/trac0; // options are aero6 Module aero/aero6; // options are acm_ae6, acm_ae6_kmt, and acm_ae6_mp Module cloud/acm_ae6; // compile for inline process analysis Module procan/pa; // options are util Module util/util; set NSTEPS = 230000 set TSTEP = 010000 setenv GRIDDESC /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km setenv GRID_NAME 36km setenv CONC_SPCS ALL setenv CONC_BLEV_ELEV 1,17 setenv AVG_CONC_SPCS ALL setenv ACONC_BLEV_ELEV 1,17 setenv CTM_WB_DUST Y setenv CTM_ERODE_AGLAND N setenv CTM_WBDUST_BELD BELD3 setenv CTM_LTNG_NO N setenv CTM_WVEL Y setenv KZMIN Y setenv CTM_ILDEPV Y setenv CTM_MOSAIC N setenv CTM_FST N setenv CTM_ABFLUX N setenv CTM_HGBIDI N setenv CTM_SFC_HONO Y setenv CTM_GRAV_SETL N setenv CTM_BIOGEMIS N setenv CTM_PT3DEMIS N setenv CTM_ZERO_PCSOA N setenv CTM_PROCAN N setenv PA_BCOL_ECOL 10 95 setenv PA_BROW_EROW 10 79 setenv PA_BLEV_ELEV 1 17 setenv IOAPI_LOG_WRITE F setenv FL_ERR_STOP N setenv PROMPTFLAG F setenv IOAPI_OFFSET_64 NO setenv CTM_EMISCHK N setenv CTM_AVISDIAG Y setenv CTM_PMDIAG Y setenv CTM_APMDIAG Y setenv APMDIAG_BLEV_ELEV 1 17 setenv APMDIAG_BLEV_ELEV setenv CTM_CKSUM N setenv CTM_AERDIAG Y setenv CTM_PHOTDIAG Y setenv CTM_SSEMDIAG Y setenv CTM_DUSTEM_DIAG Y setenv CTM_DEPV_FILE N setenv VDIFF_DIAG_FILE Y setenv LTNGDIAG Y setenv CTM_AOD Y setenv B3GTS_DIAG Y setenv PT3DDIAG N setenv PT3DFRAC N setenv REP_LAYER_MIN -1 setenv EXECUTION_ID CCTM_36km set DISP = delete set OUTDIR = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km if ( ! -d /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km ) mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km set i=0 while ( 0 < 28 ) @ i1 = 0 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +0 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +1 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +0 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +0 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +0 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +0 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-02 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-02 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-02 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016002 set CONCfile = CCTM_36km.CONC.36km_2016002 set ACONCfile = CCTM_36km.ACONC.36km_2016002 set CGRIDfile = CCTM_36km.CGRID.36km_2016002 set DD1file = CCTM_36km.DRYDEP.36km_2016002 set DV1file = CCTM_36km.DEPV.36km_2016002 set PT1file = CCTM_36km.PT3D.36km_2016002 set WD1file = CCTM_36km.WETDEP1.36km_2016002 set WD2file = CCTM_36km.WETDEP2.36km_2016002 set AV1file = CCTM_36km.AEROVIS.36km_2016002 set AD1file = CCTM_36km.AERODIAM.36km_2016002 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016002 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016002 set SSEfile = CCTM_36km.SSEMIS.36km_2016002 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016002 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016002 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016002 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016002 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016002 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016002 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016002 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160102 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160102.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160102.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160102.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016001 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-02 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-02 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-02 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-02 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-02 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-02 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-02 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016002 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016002 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016002 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-02" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016002 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-02" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016002" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016002:000000 (0:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016002:010000 from timestep on initial data files for date and time 2016002:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016002" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016002:000000 (0:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-02" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160102.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016003:000000 (0:00:00 Jan. 3, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-02" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-02" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-02" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016002 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016002 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016002 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-02" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-02" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 2, 2016 (2016002:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016002/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000600 2 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 2, 2016 (2016002:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 2, 2016 (2016002:010000) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 22034. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- 13.396u 17.537s 0:12.79 241.7% 0+0k 0+247704io 31pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016002 mv ./CTM_LOG_001.36km_2016002 ./CTM_LOG_002.36km_2016002 ./CTM_LOG_003.36km_2016002 ./CTM_LOG_004.36km_2016002 ./CTM_LOG_005.36km_2016002 ./CTM_LOG_006.36km_2016002 ./CTM_LOG_007.36km_2016002 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016002 @ i = 0 + 1 end while ( 1 < 28 ) @ i1 = 1 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +1 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +2 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +1 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +1 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +1 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +1 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-03 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-03 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-03 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016003 set CONCfile = CCTM_36km.CONC.36km_2016003 set ACONCfile = CCTM_36km.ACONC.36km_2016003 set CGRIDfile = CCTM_36km.CGRID.36km_2016003 set DD1file = CCTM_36km.DRYDEP.36km_2016003 set DV1file = CCTM_36km.DEPV.36km_2016003 set PT1file = CCTM_36km.PT3D.36km_2016003 set WD1file = CCTM_36km.WETDEP1.36km_2016003 set WD2file = CCTM_36km.WETDEP2.36km_2016003 set AV1file = CCTM_36km.AEROVIS.36km_2016003 set AD1file = CCTM_36km.AERODIAM.36km_2016003 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016003 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016003 set SSEfile = CCTM_36km.SSEMIS.36km_2016003 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016003 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016003 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016003 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016003 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016003 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016003 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016003 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160103 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160103.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160103.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160103.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016002 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-03 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-03 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-03 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-03 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-03 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-03 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-03 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016003 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016003 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016003 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-03" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016003 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-03" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016003" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016003:000000 (0:00:00 Jan. 3, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016003:010000 from timestep on initial data files for date and time 2016003:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016003" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016003:000000 (0:00:00 Jan. 3, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-03" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160103.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016004:000000 (0:00:00 Jan. 4, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-03" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-03" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-03" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016003 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016003 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016003 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-03" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-03" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 3, 2016 (2016003:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016003/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000600 2 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD with errorcode 21958. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 3, 2016 (2016003:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 3, 2016 (2016003:010000) [catalyst-Precision-Tower-3620:15336] 4 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15336] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 12.920u 17.437s 0:14.60 207.8% 0+0k 0+246672io 23pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016003 mv ./CTM_LOG_001.36km_2016003 ./CTM_LOG_002.36km_2016003 ./CTM_LOG_003.36km_2016003 ./CTM_LOG_004.36km_2016003 ./CTM_LOG_005.36km_2016003 ./CTM_LOG_006.36km_2016003 ./CTM_LOG_007.36km_2016003 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016003 @ i = 1 + 1 end while ( 2 < 28 ) @ i1 = 2 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +2 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +3 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +2 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +2 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +2 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +2 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-04 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-04 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-04 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016004 set CONCfile = CCTM_36km.CONC.36km_2016004 set ACONCfile = CCTM_36km.ACONC.36km_2016004 set CGRIDfile = CCTM_36km.CGRID.36km_2016004 set DD1file = CCTM_36km.DRYDEP.36km_2016004 set DV1file = CCTM_36km.DEPV.36km_2016004 set PT1file = CCTM_36km.PT3D.36km_2016004 set WD1file = CCTM_36km.WETDEP1.36km_2016004 set WD2file = CCTM_36km.WETDEP2.36km_2016004 set AV1file = CCTM_36km.AEROVIS.36km_2016004 set AD1file = CCTM_36km.AERODIAM.36km_2016004 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016004 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016004 set SSEfile = CCTM_36km.SSEMIS.36km_2016004 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016004 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016004 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016004 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016004 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016004 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016004 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016004 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160104 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160104.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160104.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160104.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016003 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-04 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-04 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-04 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-04 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-04 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-04 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-04 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016004 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016004 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016004 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-04" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016004 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-04" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016004" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016004:000000 (0:00:00 Jan. 4, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016004:010000 from timestep on initial data files for date and time 2016004:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016004" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016004:000000 (0:00:00 Jan. 4, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-04" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160104.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016005:000000 (0:00:00 Jan. 5, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-04" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-04" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-04" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016004 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016004 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016004 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-04" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-04" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 4, 2016 (2016004:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016004/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 000600 2 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 4, 2016 (2016004:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 4, 2016 (2016004:010000) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 22003. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:15442] 2 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15442] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.584u 16.855s 0:14.30 212.7% 0+0k 0+246776io 24pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016004 mv ./CTM_LOG_001.36km_2016004 ./CTM_LOG_002.36km_2016004 ./CTM_LOG_003.36km_2016004 ./CTM_LOG_004.36km_2016004 ./CTM_LOG_005.36km_2016004 ./CTM_LOG_006.36km_2016004 ./CTM_LOG_007.36km_2016004 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016004 @ i = 2 + 1 end while ( 3 < 28 ) @ i1 = 3 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +3 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +4 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +3 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +3 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +3 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +3 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-05 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-05 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-05 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016005 set CONCfile = CCTM_36km.CONC.36km_2016005 set ACONCfile = CCTM_36km.ACONC.36km_2016005 set CGRIDfile = CCTM_36km.CGRID.36km_2016005 set DD1file = CCTM_36km.DRYDEP.36km_2016005 set DV1file = CCTM_36km.DEPV.36km_2016005 set PT1file = CCTM_36km.PT3D.36km_2016005 set WD1file = CCTM_36km.WETDEP1.36km_2016005 set WD2file = CCTM_36km.WETDEP2.36km_2016005 set AV1file = CCTM_36km.AEROVIS.36km_2016005 set AD1file = CCTM_36km.AERODIAM.36km_2016005 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016005 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016005 set SSEfile = CCTM_36km.SSEMIS.36km_2016005 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016005 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016005 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016005 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016005 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016005 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016005 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016005 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160105 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160105.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160105.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160105.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016004 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-05 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-05 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-05 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-05 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-05 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-05 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-05 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016005 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016005 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016005 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-05" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016005 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-05" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016005" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016005:000000 (0:00:00 Jan. 5, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016005:010000 from timestep on initial data files for date and time 2016005:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016005" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016005:000000 (0:00:00 Jan. 5, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-05" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160105.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016006:000000 (0:00:00 Jan. 6, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-05" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-05" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-05" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016005 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016005 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016005 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-05" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-05" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 5, 2016 (2016005:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016005/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 22059. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:15488] 1 more process has sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15488] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 15.120u 20.134s 0:14.27 247.0% 0+0k 0+248096io 25pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016005 mv ./CTM_LOG_001.36km_2016005 ./CTM_LOG_002.36km_2016005 ./CTM_LOG_003.36km_2016005 ./CTM_LOG_004.36km_2016005 ./CTM_LOG_005.36km_2016005 ./CTM_LOG_006.36km_2016005 ./CTM_LOG_007.36km_2016005 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016005 @ i = 3 + 1 end while ( 4 < 28 ) @ i1 = 4 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +4 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +5 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +4 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +4 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +4 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +4 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-06 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-06 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-06 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016006 set CONCfile = CCTM_36km.CONC.36km_2016006 set ACONCfile = CCTM_36km.ACONC.36km_2016006 set CGRIDfile = CCTM_36km.CGRID.36km_2016006 set DD1file = CCTM_36km.DRYDEP.36km_2016006 set DV1file = CCTM_36km.DEPV.36km_2016006 set PT1file = CCTM_36km.PT3D.36km_2016006 set WD1file = CCTM_36km.WETDEP1.36km_2016006 set WD2file = CCTM_36km.WETDEP2.36km_2016006 set AV1file = CCTM_36km.AEROVIS.36km_2016006 set AD1file = CCTM_36km.AERODIAM.36km_2016006 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016006 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016006 set SSEfile = CCTM_36km.SSEMIS.36km_2016006 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016006 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016006 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016006 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016006 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016006 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016006 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016006 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160106 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160106.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160106.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160106.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016005 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-06 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-06 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-06 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-06 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-06 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-06 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-06 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016006 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016006 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016006 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-06" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016006 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-06" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016006" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016006:000000 (0:00:00 Jan. 6, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016006:010000 from timestep on initial data files for date and time 2016006:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016006" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016006:000000 (0:00:00 Jan. 6, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-06" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160106.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016007:000000 (0:00:00 Jan. 7, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-06" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-06" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-06" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016006 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016006 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016006 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-06" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-06" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 6, 2016 (2016006:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016006/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000600 2 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 4 in communicator MPI_COMM_WORLD with errorcode 22007. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 6, 2016 (2016006:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 6, 2016 (2016006:010000) [catalyst-Precision-Tower-3620:15535] 7 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15535] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 14.326u 18.582s 0:16.02 205.3% 0+0k 0+246624io 27pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016006 mv ./CTM_LOG_001.36km_2016006 ./CTM_LOG_002.36km_2016006 ./CTM_LOG_003.36km_2016006 ./CTM_LOG_004.36km_2016006 ./CTM_LOG_005.36km_2016006 ./CTM_LOG_006.36km_2016006 ./CTM_LOG_007.36km_2016006 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016006 @ i = 4 + 1 end while ( 5 < 28 ) @ i1 = 5 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +5 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +6 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +5 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +5 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +5 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +5 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-07 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-07 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-07 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016007 set CONCfile = CCTM_36km.CONC.36km_2016007 set ACONCfile = CCTM_36km.ACONC.36km_2016007 set CGRIDfile = CCTM_36km.CGRID.36km_2016007 set DD1file = CCTM_36km.DRYDEP.36km_2016007 set DV1file = CCTM_36km.DEPV.36km_2016007 set PT1file = CCTM_36km.PT3D.36km_2016007 set WD1file = CCTM_36km.WETDEP1.36km_2016007 set WD2file = CCTM_36km.WETDEP2.36km_2016007 set AV1file = CCTM_36km.AEROVIS.36km_2016007 set AD1file = CCTM_36km.AERODIAM.36km_2016007 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016007 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016007 set SSEfile = CCTM_36km.SSEMIS.36km_2016007 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016007 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016007 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016007 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016007 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016007 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016007 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016007 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160107 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160107.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160107.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160107.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016006 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-07 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-07 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-07 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-07 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-07 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-07 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-07 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016007 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016007 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016007 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-07" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016007 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-07" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016007" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016007:000000 (0:00:00 Jan. 7, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016007:010000 from timestep on initial data files for date and time 2016007:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016007" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016007:000000 (0:00:00 Jan. 7, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-07" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160107.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016008:000000 (0:00:00 Jan. 8, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-07" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-07" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-07" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016007 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016007 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016007 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-07" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-07" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 7, 2016 (2016007:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016007/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000600 2 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD with errorcode 21965. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 7, 2016 (2016007:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 7, 2016 (2016007:010000) [catalyst-Precision-Tower-3620:15592] 4 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15592] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.707u 18.392s 0:13.32 240.9% 0+0k 0+24824io 26pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016007 mv ./CTM_LOG_001.36km_2016007 ./CTM_LOG_002.36km_2016007 ./CTM_LOG_003.36km_2016007 ./CTM_LOG_004.36km_2016007 ./CTM_LOG_005.36km_2016007 ./CTM_LOG_006.36km_2016007 ./CTM_LOG_007.36km_2016007 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016007 @ i = 5 + 1 end while ( 6 < 28 ) @ i1 = 6 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +6 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +7 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +6 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +6 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +6 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +6 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-08 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-08 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-08 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016008 set CONCfile = CCTM_36km.CONC.36km_2016008 set ACONCfile = CCTM_36km.ACONC.36km_2016008 set CGRIDfile = CCTM_36km.CGRID.36km_2016008 set DD1file = CCTM_36km.DRYDEP.36km_2016008 set DV1file = CCTM_36km.DEPV.36km_2016008 set PT1file = CCTM_36km.PT3D.36km_2016008 set WD1file = CCTM_36km.WETDEP1.36km_2016008 set WD2file = CCTM_36km.WETDEP2.36km_2016008 set AV1file = CCTM_36km.AEROVIS.36km_2016008 set AD1file = CCTM_36km.AERODIAM.36km_2016008 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016008 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016008 set SSEfile = CCTM_36km.SSEMIS.36km_2016008 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016008 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016008 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016008 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016008 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016008 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016008 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016008 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160108 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160108.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160108.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160108.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016007 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-08 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-08 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-08 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-08 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-08 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-08 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-08 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016008 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016008 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016008 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-08" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016008 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-08" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016008" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016008:000000 (0:00:00 Jan. 8, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016008:010000 from timestep on initial data files for date and time 2016008:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016008" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016008:000000 (0:00:00 Jan. 8, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-08" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160108.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016009:000000 (0:00:00 Jan. 9, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-08" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-08" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-08" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016008 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016008 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016008 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-08" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-08" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 8, 2016 (2016008:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016008/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000600 2 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD with errorcode 21908. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 8, 2016 (2016008:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 8, 2016 (2016008:010000) [catalyst-Precision-Tower-3620:15639] 5 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15639] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 15.264u 18.313s 0:15.79 212.6% 0+0k 0+247088io 26pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016008 mv ./CTM_LOG_001.36km_2016008 ./CTM_LOG_002.36km_2016008 ./CTM_LOG_003.36km_2016008 ./CTM_LOG_004.36km_2016008 ./CTM_LOG_005.36km_2016008 ./CTM_LOG_006.36km_2016008 ./CTM_LOG_007.36km_2016008 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016008 @ i = 6 + 1 end while ( 7 < 28 ) @ i1 = 7 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +7 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +8 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +7 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +7 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +7 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +7 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-09 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-09 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-09 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016009 set CONCfile = CCTM_36km.CONC.36km_2016009 set ACONCfile = CCTM_36km.ACONC.36km_2016009 set CGRIDfile = CCTM_36km.CGRID.36km_2016009 set DD1file = CCTM_36km.DRYDEP.36km_2016009 set DV1file = CCTM_36km.DEPV.36km_2016009 set PT1file = CCTM_36km.PT3D.36km_2016009 set WD1file = CCTM_36km.WETDEP1.36km_2016009 set WD2file = CCTM_36km.WETDEP2.36km_2016009 set AV1file = CCTM_36km.AEROVIS.36km_2016009 set AD1file = CCTM_36km.AERODIAM.36km_2016009 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016009 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016009 set SSEfile = CCTM_36km.SSEMIS.36km_2016009 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016009 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016009 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016009 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016009 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016009 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016009 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016009 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160109 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160109.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160109.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160109.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016008 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-09 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-09 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-09 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-09 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-09 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-09 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-09 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016009 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016009 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016009 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-09" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016009 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-09" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016009" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016009:000000 (0:00:00 Jan. 9, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016009:010000 from timestep on initial data files for date and time 2016009:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016009" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016009:000000 (0:00:00 Jan. 9, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-09" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160109.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016010:000000 (0:00:00 Jan. 10, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-09" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-09" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-09" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016009 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016009 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016009 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-09" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-09" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 9, 2016 (2016009:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016009/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 21958. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:15684] 2 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15684] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 14.373u 17.838s 0:15.53 207.3% 0+0k 0+246528io 23pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016009 mv ./CTM_LOG_001.36km_2016009 ./CTM_LOG_002.36km_2016009 ./CTM_LOG_003.36km_2016009 ./CTM_LOG_004.36km_2016009 ./CTM_LOG_005.36km_2016009 ./CTM_LOG_006.36km_2016009 ./CTM_LOG_007.36km_2016009 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016009 @ i = 7 + 1 end while ( 8 < 28 ) @ i1 = 8 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +8 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +9 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +8 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +8 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +8 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +8 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-10 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-10 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-10 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016010 set CONCfile = CCTM_36km.CONC.36km_2016010 set ACONCfile = CCTM_36km.ACONC.36km_2016010 set CGRIDfile = CCTM_36km.CGRID.36km_2016010 set DD1file = CCTM_36km.DRYDEP.36km_2016010 set DV1file = CCTM_36km.DEPV.36km_2016010 set PT1file = CCTM_36km.PT3D.36km_2016010 set WD1file = CCTM_36km.WETDEP1.36km_2016010 set WD2file = CCTM_36km.WETDEP2.36km_2016010 set AV1file = CCTM_36km.AEROVIS.36km_2016010 set AD1file = CCTM_36km.AERODIAM.36km_2016010 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016010 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016010 set SSEfile = CCTM_36km.SSEMIS.36km_2016010 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016010 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016010 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016010 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016010 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016010 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016010 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016010 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160110 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160110.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160110.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160110.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016009 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-10 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-10 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-10 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-10 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-10 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-10 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-10 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016010 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016010 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016010 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-10" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016010 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-10" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016010" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016010:000000 (0:00:00 Jan. 10, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016010:010000 from timestep on initial data files for date and time 2016010:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016010" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016010:000000 (0:00:00 Jan. 10, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-10" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160110.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016011:000000 (0:00:00 Jan. 11, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-10" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-10" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-10" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016010 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016010 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016010 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-10" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-10" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 10, 2016 (2016010:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016010/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 21970. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- 16.239u 20.068s 0:15.85 228.9% 0+0k 0+247880io 27pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016010 mv ./CTM_LOG_001.36km_2016010 ./CTM_LOG_002.36km_2016010 ./CTM_LOG_003.36km_2016010 ./CTM_LOG_004.36km_2016010 ./CTM_LOG_005.36km_2016010 ./CTM_LOG_006.36km_2016010 ./CTM_LOG_007.36km_2016010 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016010 @ i = 8 + 1 end while ( 9 < 28 ) @ i1 = 9 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +9 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +10 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +9 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +9 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +9 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +9 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-11 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-11 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-11 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016011 set CONCfile = CCTM_36km.CONC.36km_2016011 set ACONCfile = CCTM_36km.ACONC.36km_2016011 set CGRIDfile = CCTM_36km.CGRID.36km_2016011 set DD1file = CCTM_36km.DRYDEP.36km_2016011 set DV1file = CCTM_36km.DEPV.36km_2016011 set PT1file = CCTM_36km.PT3D.36km_2016011 set WD1file = CCTM_36km.WETDEP1.36km_2016011 set WD2file = CCTM_36km.WETDEP2.36km_2016011 set AV1file = CCTM_36km.AEROVIS.36km_2016011 set AD1file = CCTM_36km.AERODIAM.36km_2016011 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016011 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016011 set SSEfile = CCTM_36km.SSEMIS.36km_2016011 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016011 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016011 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016011 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016011 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016011 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016011 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016011 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160111 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160111.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160111.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160111.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016010 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-11 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-11 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-11 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-11 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-11 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-11 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-11 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016011 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016011 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016011 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-11" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016011 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-11" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016011" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016011:000000 (0:00:00 Jan. 11, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016011:010000 from timestep on initial data files for date and time 2016011:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016011" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016011:000000 (0:00:00 Jan. 11, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-11" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160111.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016012:000000 (0:00:00 Jan. 12, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-11" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-11" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-11" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016011 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016011 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016011 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-11" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-11" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 11, 2016 (2016011:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016011/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 5 in communicator MPI_COMM_WORLD with errorcode 22061. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE 14.807u 18.438s 0:15.25 217.9% 0+0k 256+246800io 24pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016011 mv ./CTM_LOG_001.36km_2016011 ./CTM_LOG_002.36km_2016011 ./CTM_LOG_003.36km_2016011 ./CTM_LOG_004.36km_2016011 ./CTM_LOG_005.36km_2016011 ./CTM_LOG_006.36km_2016011 ./CTM_LOG_007.36km_2016011 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016011 @ i = 9 + 1 end while ( 10 < 28 ) @ i1 = 10 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +10 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +11 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +10 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +10 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +10 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +10 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-12 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-12 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-12 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016012 set CONCfile = CCTM_36km.CONC.36km_2016012 set ACONCfile = CCTM_36km.ACONC.36km_2016012 set CGRIDfile = CCTM_36km.CGRID.36km_2016012 set DD1file = CCTM_36km.DRYDEP.36km_2016012 set DV1file = CCTM_36km.DEPV.36km_2016012 set PT1file = CCTM_36km.PT3D.36km_2016012 set WD1file = CCTM_36km.WETDEP1.36km_2016012 set WD2file = CCTM_36km.WETDEP2.36km_2016012 set AV1file = CCTM_36km.AEROVIS.36km_2016012 set AD1file = CCTM_36km.AERODIAM.36km_2016012 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016012 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016012 set SSEfile = CCTM_36km.SSEMIS.36km_2016012 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016012 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016012 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016012 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016012 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016012 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016012 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016012 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160112 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160112.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160112.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160112.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016011 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-12 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-12 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-12 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-12 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-12 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-12 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-12 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016012 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016012 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016012 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-12" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016012 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-12" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016012" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016012:000000 (0:00:00 Jan. 12, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016012:010000 from timestep on initial data files for date and time 2016012:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016012" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016012:000000 (0:00:00 Jan. 12, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-12" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160112.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016013:000000 (0:00:00 Jan. 13, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-12" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-12" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-12" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016012 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016012 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016012 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-12" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-12" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 12, 2016 (2016012:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016012/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000600 2 15 000600 2 14 001200 1 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 12, 2016 (2016012:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 12, 2016 (2016012:010000) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 21847. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:15830] 2 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15830] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 14.656u 18.268s 0:16.48 199.6% 0+0k 5760+246752io 41pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016012 mv ./CTM_LOG_001.36km_2016012 ./CTM_LOG_002.36km_2016012 ./CTM_LOG_003.36km_2016012 ./CTM_LOG_004.36km_2016012 ./CTM_LOG_005.36km_2016012 ./CTM_LOG_006.36km_2016012 ./CTM_LOG_007.36km_2016012 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016012 @ i = 10 + 1 end while ( 11 < 28 ) @ i1 = 11 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +11 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +12 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +11 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +11 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +11 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +11 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-13 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-13 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-13 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016013 set CONCfile = CCTM_36km.CONC.36km_2016013 set ACONCfile = CCTM_36km.ACONC.36km_2016013 set CGRIDfile = CCTM_36km.CGRID.36km_2016013 set DD1file = CCTM_36km.DRYDEP.36km_2016013 set DV1file = CCTM_36km.DEPV.36km_2016013 set PT1file = CCTM_36km.PT3D.36km_2016013 set WD1file = CCTM_36km.WETDEP1.36km_2016013 set WD2file = CCTM_36km.WETDEP2.36km_2016013 set AV1file = CCTM_36km.AEROVIS.36km_2016013 set AD1file = CCTM_36km.AERODIAM.36km_2016013 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016013 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016013 set SSEfile = CCTM_36km.SSEMIS.36km_2016013 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016013 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016013 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016013 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016013 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016013 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016013 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016013 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160113 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160113.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160113.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160113.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016012 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-13 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-13 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-13 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-13 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-13 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-13 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-13 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016013 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016013 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016013 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata University Corporation for Atmospheric Research/Unidata University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Program) and the PVM parallel-programming library (from This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 Oak Ridge National Laboratory). Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 Copyright (C) 1992-2002 MCNC, I/O Applications Programming Interface, [I/O API] which is Copyright (C) 1992-2002 MCNC, Oak Ridge National Laboratory). I/O Applications Programming Interface, [I/O API] which is (C) 1992-2013 Carlie J. Coats, Jr., built on top of the netCDF I/O library (Copyright 1993, 1996 (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and University Corporation for Atmospheric Research/Unidata (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and built on top of the netCDF I/O library (Copyright 1993, 1996 Copyright (C) 1992-2002 MCNC, This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 (C) 2014-2016 UNC Institute for the Environment. Program) and the PVM parallel-programming library (from (C) 2014-2016 UNC Institute for the Environment. University Corporation for Atmospheric Research/Unidata (C) 1992-2013 Carlie J. Coats, Jr., Released under the GNU LGPL License, version 2.1. See URL Released under the GNU LGPL License, version 2.1. See URL Program) and the PVM parallel-programming library (from I/O Applications Programming Interface, [I/O API] which is This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and Oak Ridge National Laboratory). Oak Ridge National Laboratory). https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html built on top of the netCDF I/O library (Copyright 1993, 1996 I/O Applications Programming Interface, [I/O API] which is Copyright (C) 1992-2002 MCNC, Copyright (C) 1992-2002 MCNC, (C) 2014-2016 UNC Institute for the Environment. (C) 1992-2013 Carlie J. Coats, Jr., for conditions of use. (C) 1992-2013 Carlie J. Coats, Jr., University Corporation for Atmospheric Research/Unidata built on top of the netCDF I/O library (Copyright 1993, 1996 Released under the GNU LGPL License, version 2.1. See URL (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and for conditions of use. Program) and the PVM parallel-programming library (from (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and University Corporation for Atmospheric Research/Unidata ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ (C) 2014-2016 UNC Institute for the Environment. Oak Ridge National Laboratory). https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html (C) 2014-2016 UNC Institute for the Environment. Program) and the PVM parallel-programming library (from netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Released under the GNU LGPL License, version 2.1. See URL Copyright (C) 1992-2002 MCNC, Released under the GNU LGPL License, version 2.1. See URL Oak Ridge National Laboratory). ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ (C) 1992-2013 Carlie J. Coats, Jr., for conditions of use. https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and Copyright (C) 1992-2002 MCNC, https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html (C) 2014-2016 UNC Institute for the Environment. (C) 1992-2013 Carlie J. Coats, Jr., ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ for conditions of use. Released under the GNU LGPL License, version 2.1. See URL (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and for conditions of use. (C) 2014-2016 UNC Institute for the Environment. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html Released under the GNU LGPL License, version 2.1. See URL ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ for conditions of use. https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-13" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016013 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-13" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016013" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016013:000000 (0:00:00 Jan. 13, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016013:010000 from timestep on initial data files for date and time 2016013:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016013" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016013:000000 (0:00:00 Jan. 13, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-13" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160113.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016014:000000 (0:00:00 Jan. 14, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-13" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-13" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-13" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016013 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016013 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016013 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-13" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-13" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 13, 2016 (2016013:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016013/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000600 2 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 21868. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 13, 2016 (2016013:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 13, 2016 (2016013:010000) [catalyst-Precision-Tower-3620:15877] 5 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15877] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 12.177u 14.921s 0:13.36 202.7% 0+0k 0+246544io 30pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016013 mv ./CTM_LOG_001.36km_2016013 ./CTM_LOG_002.36km_2016013 ./CTM_LOG_003.36km_2016013 ./CTM_LOG_004.36km_2016013 ./CTM_LOG_005.36km_2016013 ./CTM_LOG_006.36km_2016013 ./CTM_LOG_007.36km_2016013 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016013 @ i = 11 + 1 end while ( 12 < 28 ) @ i1 = 12 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +12 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +13 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +12 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +12 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +12 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +12 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-14 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-14 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-14 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016014 set CONCfile = CCTM_36km.CONC.36km_2016014 set ACONCfile = CCTM_36km.ACONC.36km_2016014 set CGRIDfile = CCTM_36km.CGRID.36km_2016014 set DD1file = CCTM_36km.DRYDEP.36km_2016014 set DV1file = CCTM_36km.DEPV.36km_2016014 set PT1file = CCTM_36km.PT3D.36km_2016014 set WD1file = CCTM_36km.WETDEP1.36km_2016014 set WD2file = CCTM_36km.WETDEP2.36km_2016014 set AV1file = CCTM_36km.AEROVIS.36km_2016014 set AD1file = CCTM_36km.AERODIAM.36km_2016014 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016014 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016014 set SSEfile = CCTM_36km.SSEMIS.36km_2016014 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016014 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016014 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016014 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016014 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016014 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016014 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016014 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160114 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160114.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160114.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160114.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016013 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-14 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-14 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-14 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-14 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-14 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-14 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-14 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016014 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016014 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016014 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ (C) 1992-2013 Carlie J. Coats, Jr., Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-14" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016014 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-14" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016014" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016014:000000 (0:00:00 Jan. 14, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016014:010000 from timestep on initial data files for date and time 2016014:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016014" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016014:000000 (0:00:00 Jan. 14, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-14" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160114.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016015:000000 (0:00:00 Jan. 15, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-14" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-14" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-14" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016014 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016014 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016014 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-14" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-14" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 14, 2016 (2016014:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016014/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 14, 2016 (2016014:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 14, 2016 (2016014:010000) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 22000. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:15922] 2 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15922] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 14.462u 18.916s 0:15.89 210.0% 0+0k 0+246904io 29pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016014 mv ./CTM_LOG_001.36km_2016014 ./CTM_LOG_002.36km_2016014 ./CTM_LOG_003.36km_2016014 ./CTM_LOG_004.36km_2016014 ./CTM_LOG_005.36km_2016014 ./CTM_LOG_006.36km_2016014 ./CTM_LOG_007.36km_2016014 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016014 @ i = 12 + 1 end while ( 13 < 28 ) @ i1 = 13 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +13 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +14 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +13 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +13 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +13 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +13 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-15 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-15 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-15 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016015 set CONCfile = CCTM_36km.CONC.36km_2016015 set ACONCfile = CCTM_36km.ACONC.36km_2016015 set CGRIDfile = CCTM_36km.CGRID.36km_2016015 set DD1file = CCTM_36km.DRYDEP.36km_2016015 set DV1file = CCTM_36km.DEPV.36km_2016015 set PT1file = CCTM_36km.PT3D.36km_2016015 set WD1file = CCTM_36km.WETDEP1.36km_2016015 set WD2file = CCTM_36km.WETDEP2.36km_2016015 set AV1file = CCTM_36km.AEROVIS.36km_2016015 set AD1file = CCTM_36km.AERODIAM.36km_2016015 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016015 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016015 set SSEfile = CCTM_36km.SSEMIS.36km_2016015 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016015 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016015 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016015 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016015 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016015 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016015 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016015 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160115 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160115.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160115.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160115.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016014 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-15 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-15 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-15 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-15 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-15 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-15 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-15 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016015 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016015 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016015 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-15" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016015 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-15" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016015" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016015:000000 (0:00:00 Jan. 15, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016015:010000 from timestep on initial data files for date and time 2016015:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016015" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016015:000000 (0:00:00 Jan. 15, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-15" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160115.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016016:000000 (0:00:00 Jan. 16, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-15" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-15" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-15" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016015 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016015 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016015 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-15" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-15" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 15, 2016 (2016015:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016015/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 001200 1 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD with errorcode 21932. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 15, 2016 (2016015:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 15, 2016 (2016015:010000) [catalyst-Precision-Tower-3620:15969] 2 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:15969] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 14.087u 18.048s 0:15.22 211.0% 0+0k 0+246568io 27pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016015 mv ./CTM_LOG_001.36km_2016015 ./CTM_LOG_002.36km_2016015 ./CTM_LOG_003.36km_2016015 ./CTM_LOG_004.36km_2016015 ./CTM_LOG_005.36km_2016015 ./CTM_LOG_006.36km_2016015 ./CTM_LOG_007.36km_2016015 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016015 @ i = 13 + 1 end while ( 14 < 28 ) @ i1 = 14 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +14 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +15 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +14 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +14 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +14 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +14 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-16 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-16 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-16 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016016 set CONCfile = CCTM_36km.CONC.36km_2016016 set ACONCfile = CCTM_36km.ACONC.36km_2016016 set CGRIDfile = CCTM_36km.CGRID.36km_2016016 set DD1file = CCTM_36km.DRYDEP.36km_2016016 set DV1file = CCTM_36km.DEPV.36km_2016016 set PT1file = CCTM_36km.PT3D.36km_2016016 set WD1file = CCTM_36km.WETDEP1.36km_2016016 set WD2file = CCTM_36km.WETDEP2.36km_2016016 set AV1file = CCTM_36km.AEROVIS.36km_2016016 set AD1file = CCTM_36km.AERODIAM.36km_2016016 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016016 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016016 set SSEfile = CCTM_36km.SSEMIS.36km_2016016 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016016 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016016 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016016 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016016 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016016 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016016 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016016 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160116 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160116.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160116.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160116.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016015 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-16 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-16 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-16 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-16 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-16 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-16 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-16 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016016 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016016 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016016 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-16" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016016 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-16" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016016" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016016:000000 (0:00:00 Jan. 16, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016016:010000 from timestep on initial data files for date and time 2016016:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016016" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016016:000000 (0:00:00 Jan. 16, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-16" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160116.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016017:000000 (0:00:00 Jan. 17, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-16" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-16" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-16" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016016 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016016 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016016 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-16" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-16" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 16, 2016 (2016016:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016016/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 000600 2 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 7 in communicator MPI_COMM_WORLD with errorcode 21988. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:16019] 2 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16019] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.374u 16.041s 0:13.33 220.6% 0+0k 0+25016io 22pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016016 mv ./CTM_LOG_001.36km_2016016 ./CTM_LOG_002.36km_2016016 ./CTM_LOG_003.36km_2016016 ./CTM_LOG_004.36km_2016016 ./CTM_LOG_005.36km_2016016 ./CTM_LOG_006.36km_2016016 ./CTM_LOG_007.36km_2016016 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016016 @ i = 14 + 1 end while ( 15 < 28 ) @ i1 = 15 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +15 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +16 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +15 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +15 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +15 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +15 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-17 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-17 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-17 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016017 set CONCfile = CCTM_36km.CONC.36km_2016017 set ACONCfile = CCTM_36km.ACONC.36km_2016017 set CGRIDfile = CCTM_36km.CGRID.36km_2016017 set DD1file = CCTM_36km.DRYDEP.36km_2016017 set DV1file = CCTM_36km.DEPV.36km_2016017 set PT1file = CCTM_36km.PT3D.36km_2016017 set WD1file = CCTM_36km.WETDEP1.36km_2016017 set WD2file = CCTM_36km.WETDEP2.36km_2016017 set AV1file = CCTM_36km.AEROVIS.36km_2016017 set AD1file = CCTM_36km.AERODIAM.36km_2016017 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016017 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016017 set SSEfile = CCTM_36km.SSEMIS.36km_2016017 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016017 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016017 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016017 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016017 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016017 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016017 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016017 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160117 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160117.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160117.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160117.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016016 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-17 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-17 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-17 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-17 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-17 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-17 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-17 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016017 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016017 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016017 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-17" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016017 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-17" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016017" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016017:000000 (0:00:00 Jan. 17, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016017:010000 from timestep on initial data files for date and time 2016017:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016017" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016017:000000 (0:00:00 Jan. 17, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-17" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160117.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016018:000000 (0:00:00 Jan. 18, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-17" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-17" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-17" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016017 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016017 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016017 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-17" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-17" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 17, 2016 (2016017:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016017/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 4 in communicator MPI_COMM_WORLD with errorcode 22043. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:16066] 1 more process has sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16066] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 14.258u 17.745s 0:16.23 197.1% 0+0k 0+247040io 22pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016017 mv ./CTM_LOG_001.36km_2016017 ./CTM_LOG_002.36km_2016017 ./CTM_LOG_003.36km_2016017 ./CTM_LOG_004.36km_2016017 ./CTM_LOG_005.36km_2016017 ./CTM_LOG_006.36km_2016017 ./CTM_LOG_007.36km_2016017 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016017 @ i = 15 + 1 end while ( 16 < 28 ) @ i1 = 16 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +16 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +17 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +16 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +16 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +16 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +16 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-18 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-18 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-18 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016018 set CONCfile = CCTM_36km.CONC.36km_2016018 set ACONCfile = CCTM_36km.ACONC.36km_2016018 set CGRIDfile = CCTM_36km.CGRID.36km_2016018 set DD1file = CCTM_36km.DRYDEP.36km_2016018 set DV1file = CCTM_36km.DEPV.36km_2016018 set PT1file = CCTM_36km.PT3D.36km_2016018 set WD1file = CCTM_36km.WETDEP1.36km_2016018 set WD2file = CCTM_36km.WETDEP2.36km_2016018 set AV1file = CCTM_36km.AEROVIS.36km_2016018 set AD1file = CCTM_36km.AERODIAM.36km_2016018 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016018 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016018 set SSEfile = CCTM_36km.SSEMIS.36km_2016018 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016018 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016018 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016018 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016018 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016018 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016018 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016018 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160118 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160118.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160118.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160118.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016017 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-18 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-18 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-18 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-18 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-18 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-18 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-18 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016018 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016018 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016018 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-18" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016018 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-18" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016018" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016018:000000 (0:00:00 Jan. 18, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016018:010000 from timestep on initial data files for date and time 2016018:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016018" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016018:000000 (0:00:00 Jan. 18, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-18" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160118.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016019:000000 (0:00:00 Jan. 19, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-18" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-18" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-18" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016018 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016018 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016018 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-18" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-18" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 18, 2016 (2016018:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016018/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 4 in communicator MPI_COMM_WORLD with errorcode 21869. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 18, 2016 (2016018:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 18, 2016 (2016018:010000) [catalyst-Precision-Tower-3620:16114] 5 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16114] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.885u 17.761s 0:14.77 214.2% 0+0k 0+247168io 25pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016018 mv ./CTM_LOG_001.36km_2016018 ./CTM_LOG_002.36km_2016018 ./CTM_LOG_003.36km_2016018 ./CTM_LOG_004.36km_2016018 ./CTM_LOG_005.36km_2016018 ./CTM_LOG_006.36km_2016018 ./CTM_LOG_007.36km_2016018 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016018 @ i = 16 + 1 end while ( 17 < 28 ) @ i1 = 17 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +17 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +18 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +17 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +17 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +17 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +17 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-19 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-19 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-19 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016019 set CONCfile = CCTM_36km.CONC.36km_2016019 set ACONCfile = CCTM_36km.ACONC.36km_2016019 set CGRIDfile = CCTM_36km.CGRID.36km_2016019 set DD1file = CCTM_36km.DRYDEP.36km_2016019 set DV1file = CCTM_36km.DEPV.36km_2016019 set PT1file = CCTM_36km.PT3D.36km_2016019 set WD1file = CCTM_36km.WETDEP1.36km_2016019 set WD2file = CCTM_36km.WETDEP2.36km_2016019 set AV1file = CCTM_36km.AEROVIS.36km_2016019 set AD1file = CCTM_36km.AERODIAM.36km_2016019 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016019 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016019 set SSEfile = CCTM_36km.SSEMIS.36km_2016019 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016019 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016019 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016019 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016019 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016019 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016019 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016019 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160119 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160119.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160119.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160119.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016018 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-19 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-19 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-19 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-19 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-19 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-19 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-19 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016019 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016019 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016019 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-19" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016019 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-19" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016019" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016019:000000 (0:00:00 Jan. 19, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016019:010000 from timestep on initial data files for date and time 2016019:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016019" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016019:000000 (0:00:00 Jan. 19, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-19" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160119.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016020:000000 (0:00:00 Jan. 20, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-19" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-19" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-19" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016019 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016019 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016019 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-19" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-19" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 19, 2016 (2016019:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016019/010000 Computed synchronization step (HHMMSS): 001000 Number of Synchronization steps: 6 Layer Advection per Sync Step (HHMMSS) Step 17 000500 2 16 000320 3 15 000500 2 14 000500 2 13 001000 1 12 001000 1 11 001000 1 10 001000 1 9 001000 1 8 001000 1 7 001000 1 6 001000 1 5 001000 1 4 001000 1 3 001000 1 2 001000 1 1 001000 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 19, 2016 (2016019:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 19, 2016 (2016019:010000) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 21846. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:16156] 4 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16156] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.603u 17.898s 0:15.15 207.8% 0+0k 0+246736io 25pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016019 mv ./CTM_LOG_001.36km_2016019 ./CTM_LOG_002.36km_2016019 ./CTM_LOG_003.36km_2016019 ./CTM_LOG_004.36km_2016019 ./CTM_LOG_005.36km_2016019 ./CTM_LOG_006.36km_2016019 ./CTM_LOG_007.36km_2016019 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016019 @ i = 17 + 1 end while ( 18 < 28 ) @ i1 = 18 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +18 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +19 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +18 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +18 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +18 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +18 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-20 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-20 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-20 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016020 set CONCfile = CCTM_36km.CONC.36km_2016020 set ACONCfile = CCTM_36km.ACONC.36km_2016020 set CGRIDfile = CCTM_36km.CGRID.36km_2016020 set DD1file = CCTM_36km.DRYDEP.36km_2016020 set DV1file = CCTM_36km.DEPV.36km_2016020 set PT1file = CCTM_36km.PT3D.36km_2016020 set WD1file = CCTM_36km.WETDEP1.36km_2016020 set WD2file = CCTM_36km.WETDEP2.36km_2016020 set AV1file = CCTM_36km.AEROVIS.36km_2016020 set AD1file = CCTM_36km.AERODIAM.36km_2016020 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016020 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016020 set SSEfile = CCTM_36km.SSEMIS.36km_2016020 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016020 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016020 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016020 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016020 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016020 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016020 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016020 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160120 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160120.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160120.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160120.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016019 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-20 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-20 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-20 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-20 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-20 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-20 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-20 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016020 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016020 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016020 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-20" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016020 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-20" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016020" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016020:000000 (0:00:00 Jan. 20, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016020:010000 from timestep on initial data files for date and time 2016020:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016020" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016020:000000 (0:00:00 Jan. 20, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-20" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160120.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016021:000000 (0:00:00 Jan. 21, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-20" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-20" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-20" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016020 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016020 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016020 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-20" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-20" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 20, 2016 (2016020:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016020/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 000600 2 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD with errorcode 22023. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE [catalyst-Precision-Tower-3620:16206] 4 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16206] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.015u 15.478s 0:15.45 184.3% 0+0k 0+23688io 16pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016020 mv ./CTM_LOG_001.36km_2016020 ./CTM_LOG_002.36km_2016020 ./CTM_LOG_003.36km_2016020 ./CTM_LOG_004.36km_2016020 ./CTM_LOG_005.36km_2016020 ./CTM_LOG_006.36km_2016020 ./CTM_LOG_007.36km_2016020 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016020 @ i = 18 + 1 end while ( 19 < 28 ) @ i1 = 19 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +19 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +20 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +19 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +19 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +19 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +19 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-21 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-21 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-21 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016021 set CONCfile = CCTM_36km.CONC.36km_2016021 set ACONCfile = CCTM_36km.ACONC.36km_2016021 set CGRIDfile = CCTM_36km.CGRID.36km_2016021 set DD1file = CCTM_36km.DRYDEP.36km_2016021 set DV1file = CCTM_36km.DEPV.36km_2016021 set PT1file = CCTM_36km.PT3D.36km_2016021 set WD1file = CCTM_36km.WETDEP1.36km_2016021 set WD2file = CCTM_36km.WETDEP2.36km_2016021 set AV1file = CCTM_36km.AEROVIS.36km_2016021 set AD1file = CCTM_36km.AERODIAM.36km_2016021 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016021 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016021 set SSEfile = CCTM_36km.SSEMIS.36km_2016021 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016021 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016021 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016021 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016021 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016021 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016021 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016021 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160121 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160121.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160121.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160121.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016020 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-21 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-21 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-21 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-21 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-21 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-21 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-21 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016021 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016021 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016021 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-21" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016021 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-21" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016021" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016021:000000 (0:00:00 Jan. 21, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016021:010000 from timestep on initial data files for date and time 2016021:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016021" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016021:000000 (0:00:00 Jan. 21, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-21" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160121.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016022:000000 (0:00:00 Jan. 22, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-21" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-21" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-21" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016021 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016021 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016021 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-21" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-21" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 21, 2016 (2016021:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016021/010000 Computed synchronization step (HHMMSS): 001000 Number of Synchronization steps: 6 Layer Advection per Sync Step (HHMMSS) Step 17 000500 2 16 000320 3 15 000500 2 14 000500 2 13 001000 1 12 001000 1 11 001000 1 10 001000 1 9 001000 1 8 001000 1 7 001000 1 6 001000 1 5 001000 1 4 001000 1 3 001000 1 2 001000 1 1 001000 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 7 in communicator MPI_COMM_WORLD with errorcode 21988. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- 14.184u 19.259s 0:15.69 213.0% 0+0k 8+246720io 26pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016021 mv ./CTM_LOG_001.36km_2016021 ./CTM_LOG_002.36km_2016021 ./CTM_LOG_003.36km_2016021 ./CTM_LOG_004.36km_2016021 ./CTM_LOG_005.36km_2016021 ./CTM_LOG_006.36km_2016021 ./CTM_LOG_007.36km_2016021 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016021 @ i = 19 + 1 end while ( 20 < 28 ) @ i1 = 20 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +20 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +21 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +20 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +20 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +20 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +20 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-22 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-22 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-22 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016022 set CONCfile = CCTM_36km.CONC.36km_2016022 set ACONCfile = CCTM_36km.ACONC.36km_2016022 set CGRIDfile = CCTM_36km.CGRID.36km_2016022 set DD1file = CCTM_36km.DRYDEP.36km_2016022 set DV1file = CCTM_36km.DEPV.36km_2016022 set PT1file = CCTM_36km.PT3D.36km_2016022 set WD1file = CCTM_36km.WETDEP1.36km_2016022 set WD2file = CCTM_36km.WETDEP2.36km_2016022 set AV1file = CCTM_36km.AEROVIS.36km_2016022 set AD1file = CCTM_36km.AERODIAM.36km_2016022 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016022 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016022 set SSEfile = CCTM_36km.SSEMIS.36km_2016022 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016022 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016022 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016022 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016022 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016022 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016022 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016022 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160122 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160122.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160122.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160122.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016021 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-22 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-22 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-22 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-22 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-22 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-22 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-22 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016022 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016022 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016022 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-22" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016022 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-22" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016022" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016022:000000 (0:00:00 Jan. 22, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016022:010000 from timestep on initial data files for date and time 2016022:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016022" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016022:000000 (0:00:00 Jan. 22, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-22" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160122.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016023:000000 (0:00:00 Jan. 23, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-22" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-22" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-22" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016022 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016022 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016022 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-22" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-22" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 22, 2016 (2016022:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016022/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 000600 2 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 22, 2016 (2016022:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 22, 2016 (2016022:010000) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 22007. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:16299] 6 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16299] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.819u 17.053s 0:14.73 209.5% 0+0k 0+246936io 23pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016022 mv ./CTM_LOG_001.36km_2016022 ./CTM_LOG_002.36km_2016022 ./CTM_LOG_003.36km_2016022 ./CTM_LOG_004.36km_2016022 ./CTM_LOG_005.36km_2016022 ./CTM_LOG_006.36km_2016022 ./CTM_LOG_007.36km_2016022 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016022 @ i = 20 + 1 end while ( 21 < 28 ) @ i1 = 21 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +21 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +22 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +21 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +21 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +21 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +21 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-23 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-23 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-23 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016023 set CONCfile = CCTM_36km.CONC.36km_2016023 set ACONCfile = CCTM_36km.ACONC.36km_2016023 set CGRIDfile = CCTM_36km.CGRID.36km_2016023 set DD1file = CCTM_36km.DRYDEP.36km_2016023 set DV1file = CCTM_36km.DEPV.36km_2016023 set PT1file = CCTM_36km.PT3D.36km_2016023 set WD1file = CCTM_36km.WETDEP1.36km_2016023 set WD2file = CCTM_36km.WETDEP2.36km_2016023 set AV1file = CCTM_36km.AEROVIS.36km_2016023 set AD1file = CCTM_36km.AERODIAM.36km_2016023 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016023 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016023 set SSEfile = CCTM_36km.SSEMIS.36km_2016023 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016023 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016023 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016023 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016023 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016023 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016023 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016023 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160123 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160123.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160123.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160123.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016022 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-23 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-23 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-23 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-23 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-23 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-23 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-23 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016023 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016023 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016023 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-23" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016023 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-23" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016023" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016023:000000 (0:00:00 Jan. 23, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016023:010000 from timestep on initial data files for date and time 2016023:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016023" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016023:000000 (0:00:00 Jan. 23, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-23" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160123.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016024:000000 (0:00:00 Jan. 24, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-23" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-23" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-23" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016023 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016023 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016023 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-23" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-23" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 23, 2016 (2016023:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016023/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 5 in communicator MPI_COMM_WORLD with errorcode 21891. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 23, 2016 (2016023:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 23, 2016 (2016023:010000) [catalyst-Precision-Tower-3620:16346] 4 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16346] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 15.043u 18.638s 0:15.56 216.3% 0+0k 0+246768io 30pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016023 mv ./CTM_LOG_001.36km_2016023 ./CTM_LOG_002.36km_2016023 ./CTM_LOG_003.36km_2016023 ./CTM_LOG_004.36km_2016023 ./CTM_LOG_005.36km_2016023 ./CTM_LOG_006.36km_2016023 ./CTM_LOG_007.36km_2016023 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016023 @ i = 21 + 1 end while ( 22 < 28 ) @ i1 = 22 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +22 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +23 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +22 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +22 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +22 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +22 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-24 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-24 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-24 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016024 set CONCfile = CCTM_36km.CONC.36km_2016024 set ACONCfile = CCTM_36km.ACONC.36km_2016024 set CGRIDfile = CCTM_36km.CGRID.36km_2016024 set DD1file = CCTM_36km.DRYDEP.36km_2016024 set DV1file = CCTM_36km.DEPV.36km_2016024 set PT1file = CCTM_36km.PT3D.36km_2016024 set WD1file = CCTM_36km.WETDEP1.36km_2016024 set WD2file = CCTM_36km.WETDEP2.36km_2016024 set AV1file = CCTM_36km.AEROVIS.36km_2016024 set AD1file = CCTM_36km.AERODIAM.36km_2016024 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016024 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016024 set SSEfile = CCTM_36km.SSEMIS.36km_2016024 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016024 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016024 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016024 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016024 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016024 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016024 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016024 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160124 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160124.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160124.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160124.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016023 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-24 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-24 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-24 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-24 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-24 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-24 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-24 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016024 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016024 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016024 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-24" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016024 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-24" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016024" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016024:000000 (0:00:00 Jan. 24, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016024:010000 from timestep on initial data files for date and time 2016024:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016024" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016024:000000 (0:00:00 Jan. 24, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-24" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160124.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016025:000000 (0:00:00 Jan. 25, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-24" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-24" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-24" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016024 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016024 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016024 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-24" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-24" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 24, 2016 (2016024:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016024/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000400 3 14 000600 2 13 000600 2 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 21951. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:16397] 1 more process has sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16397] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 14.644u 18.228s 0:15.78 208.2% 0+0k 0+246776io 29pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016024 mv ./CTM_LOG_001.36km_2016024 ./CTM_LOG_002.36km_2016024 ./CTM_LOG_003.36km_2016024 ./CTM_LOG_004.36km_2016024 ./CTM_LOG_005.36km_2016024 ./CTM_LOG_006.36km_2016024 ./CTM_LOG_007.36km_2016024 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016024 @ i = 22 + 1 end while ( 23 < 28 ) @ i1 = 23 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +23 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +24 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +23 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +23 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +23 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +23 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-25 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-25 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-25 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016025 set CONCfile = CCTM_36km.CONC.36km_2016025 set ACONCfile = CCTM_36km.ACONC.36km_2016025 set CGRIDfile = CCTM_36km.CGRID.36km_2016025 set DD1file = CCTM_36km.DRYDEP.36km_2016025 set DV1file = CCTM_36km.DEPV.36km_2016025 set PT1file = CCTM_36km.PT3D.36km_2016025 set WD1file = CCTM_36km.WETDEP1.36km_2016025 set WD2file = CCTM_36km.WETDEP2.36km_2016025 set AV1file = CCTM_36km.AEROVIS.36km_2016025 set AD1file = CCTM_36km.AERODIAM.36km_2016025 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016025 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016025 set SSEfile = CCTM_36km.SSEMIS.36km_2016025 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016025 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016025 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016025 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016025 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016025 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016025 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016025 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160125 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160125.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160125.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160125.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016024 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-25 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-25 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-25 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-25 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-25 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-25 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-25 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016025 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016025 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016025 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-25" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016025 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-25" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016025" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016025:000000 (0:00:00 Jan. 25, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016025:010000 from timestep on initial data files for date and time 2016025:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016025" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016025:000000 (0:00:00 Jan. 25, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-25" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160125.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016026:000000 (0:00:00 Jan. 26, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-25" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-25" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-25" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016025 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016025 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016025 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-25" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-25" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 25, 2016 (2016025:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016025/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 21883. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- 12.263u 16.376s 0:13.97 204.9% 0+0k 0+246384io 30pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016025 mv ./CTM_LOG_001.36km_2016025 ./CTM_LOG_002.36km_2016025 ./CTM_LOG_003.36km_2016025 ./CTM_LOG_004.36km_2016025 ./CTM_LOG_005.36km_2016025 ./CTM_LOG_006.36km_2016025 ./CTM_LOG_007.36km_2016025 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016025 @ i = 23 + 1 end while ( 24 < 28 ) @ i1 = 24 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +24 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +25 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +24 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +24 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +24 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +24 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-26 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-26 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-26 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016026 set CONCfile = CCTM_36km.CONC.36km_2016026 set ACONCfile = CCTM_36km.ACONC.36km_2016026 set CGRIDfile = CCTM_36km.CGRID.36km_2016026 set DD1file = CCTM_36km.DRYDEP.36km_2016026 set DV1file = CCTM_36km.DEPV.36km_2016026 set PT1file = CCTM_36km.PT3D.36km_2016026 set WD1file = CCTM_36km.WETDEP1.36km_2016026 set WD2file = CCTM_36km.WETDEP2.36km_2016026 set AV1file = CCTM_36km.AEROVIS.36km_2016026 set AD1file = CCTM_36km.AERODIAM.36km_2016026 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016026 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016026 set SSEfile = CCTM_36km.SSEMIS.36km_2016026 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016026 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016026 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016026 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016026 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016026 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016026 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016026 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160126 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160126.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160126.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160126.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016025 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-26 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-26 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-26 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-26 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-26 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-26 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-26 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016026 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016026 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016026 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-26" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016026 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-26" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016026" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016026:000000 (0:00:00 Jan. 26, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016026:010000 from timestep on initial data files for date and time 2016026:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016026" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016026:000000 (0:00:00 Jan. 26, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-26" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160126.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016027:000000 (0:00:00 Jan. 27, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-26" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-26" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-26" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016026 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016026 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016026 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-26" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-26" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 26, 2016 (2016026:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016026/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 26, 2016 (2016026:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 26, 2016 (2016026:010000) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 21854. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:16495] 6 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16495] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 17.672u 22.084s 0:15.33 259.2% 0+0k 0+248120io 24pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016026 mv ./CTM_LOG_001.36km_2016026 ./CTM_LOG_002.36km_2016026 ./CTM_LOG_003.36km_2016026 ./CTM_LOG_004.36km_2016026 ./CTM_LOG_005.36km_2016026 ./CTM_LOG_006.36km_2016026 ./CTM_LOG_007.36km_2016026 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016026 @ i = 24 + 1 end while ( 25 < 28 ) @ i1 = 25 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +25 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +26 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +25 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +25 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +25 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +25 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-27 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-27 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-27 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016027 set CONCfile = CCTM_36km.CONC.36km_2016027 set ACONCfile = CCTM_36km.ACONC.36km_2016027 set CGRIDfile = CCTM_36km.CGRID.36km_2016027 set DD1file = CCTM_36km.DRYDEP.36km_2016027 set DV1file = CCTM_36km.DEPV.36km_2016027 set PT1file = CCTM_36km.PT3D.36km_2016027 set WD1file = CCTM_36km.WETDEP1.36km_2016027 set WD2file = CCTM_36km.WETDEP2.36km_2016027 set AV1file = CCTM_36km.AEROVIS.36km_2016027 set AD1file = CCTM_36km.AERODIAM.36km_2016027 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016027 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016027 set SSEfile = CCTM_36km.SSEMIS.36km_2016027 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016027 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016027 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016027 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016027 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016027 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016027 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016027 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160127 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160127.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160127.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160127.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016026 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-27 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-27 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-27 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-27 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-27 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-27 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-27 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016027 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016027 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016027 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-27" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016027 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-27" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016027" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016027:000000 (0:00:00 Jan. 27, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016027:010000 from timestep on initial data files for date and time 2016027:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016027" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016027:000000 (0:00:00 Jan. 27, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-27" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160127.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016028:000000 (0:00:00 Jan. 28, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-27" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-27" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-27" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016027 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016027 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016027 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-27" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-27" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 27, 2016 (2016027:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016027/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD with errorcode 22057. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 27, 2016 (2016027:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 27, 2016 (2016027:010000) [catalyst-Precision-Tower-3620:16543] 6 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16543] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.508u 16.888s 0:13.10 231.9% 0+0k 0+248104io 30pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016027 mv ./CTM_LOG_001.36km_2016027 ./CTM_LOG_002.36km_2016027 ./CTM_LOG_003.36km_2016027 ./CTM_LOG_004.36km_2016027 ./CTM_LOG_005.36km_2016027 ./CTM_LOG_006.36km_2016027 ./CTM_LOG_007.36km_2016027 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016027 @ i = 25 + 1 end while ( 26 < 28 ) @ i1 = 26 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +26 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +27 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +26 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +26 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +26 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +26 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-28 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-28 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-28 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016028 set CONCfile = CCTM_36km.CONC.36km_2016028 set ACONCfile = CCTM_36km.ACONC.36km_2016028 set CGRIDfile = CCTM_36km.CGRID.36km_2016028 set DD1file = CCTM_36km.DRYDEP.36km_2016028 set DV1file = CCTM_36km.DEPV.36km_2016028 set PT1file = CCTM_36km.PT3D.36km_2016028 set WD1file = CCTM_36km.WETDEP1.36km_2016028 set WD2file = CCTM_36km.WETDEP2.36km_2016028 set AV1file = CCTM_36km.AEROVIS.36km_2016028 set AD1file = CCTM_36km.AERODIAM.36km_2016028 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016028 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016028 set SSEfile = CCTM_36km.SSEMIS.36km_2016028 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016028 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016028 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016028 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016028 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016028 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016028 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016028 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160128 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160128.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160128.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160128.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016027 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-28 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-28 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-28 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-28 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-28 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-28 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-28 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016028 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016028 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016028 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-28" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016028 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-28" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016028" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016028:000000 (0:00:00 Jan. 28, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016028:010000 from timestep on initial data files for date and time 2016028:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016028" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016028:000000 (0:00:00 Jan. 28, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-28" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160128.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016029:000000 (0:00:00 Jan. 29, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-28" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-28" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-28" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016028 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016028 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016028 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-28" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-28" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 28, 2016 (2016028:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016028/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 5 in communicator MPI_COMM_WORLD with errorcode 21882. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 28, 2016 (2016028:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 28, 2016 (2016028:010000) [catalyst-Precision-Tower-3620:16594] 4 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16594] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 13.474u 16.598s 0:14.69 204.6% 0+0k 0+247008io 28pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016028 mv ./CTM_LOG_001.36km_2016028 ./CTM_LOG_002.36km_2016028 ./CTM_LOG_003.36km_2016028 ./CTM_LOG_004.36km_2016028 ./CTM_LOG_005.36km_2016028 ./CTM_LOG_006.36km_2016028 ./CTM_LOG_007.36km_2016028 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016028 @ i = 26 + 1 end while ( 27 < 28 ) @ i1 = 27 + 1 set STDPRE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +27 +%Y%j set STDATE = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i1 +%Y%j` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +28 +%Y%j set STDATE1 = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y%m%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +27 +%Y%m%d set YEAR = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%Y` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +27 +%Y set MONTH = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%m` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +27 +%m set DAY = ` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d ${s_year}/${s_month}/${s_day} +$i +%d` /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src/yest -d 2016/1/2 +27 +%d set STTIME = 010000 setenv gc_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml setenv ae_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml setenv nr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml setenv tr_matrix_nml /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml setenv CSQY_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq if ( ! ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CSQY_DATA_cb05e51_ae6_aq ) ) then if ( 1 ) then if ( N == Y || N == T ) then set biogon = 0 endif else if ( 0 ) then if ( 1 ) then if ( N == Y || N == T ) then set pt3don = 0 endif else setenv OCEAN_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf if ( 1 ) then if ( N == Y || N == T ) then set aglandon = 0 endif else if ( 0 ) then set METpath = /media/catalyst/Catalyst/mcip/36km set EXTN = 2016-01-29 set COT = /media/catalyst/Catalyst/mcip/36km setenv DUST_LU_1 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-29 setenv DUST_LU_2 /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-29 if ( 1 ) then if ( N == Y || N == T ) then set ltngon = 0 endif else setenv CTM_APPL 36km_2016029 set CONCfile = CCTM_36km.CONC.36km_2016029 set ACONCfile = CCTM_36km.ACONC.36km_2016029 set CGRIDfile = CCTM_36km.CGRID.36km_2016029 set DD1file = CCTM_36km.DRYDEP.36km_2016029 set DV1file = CCTM_36km.DEPV.36km_2016029 set PT1file = CCTM_36km.PT3D.36km_2016029 set WD1file = CCTM_36km.WETDEP1.36km_2016029 set WD2file = CCTM_36km.WETDEP2.36km_2016029 set AV1file = CCTM_36km.AEROVIS.36km_2016029 set AD1file = CCTM_36km.AERODIAM.36km_2016029 set RJ1file = CCTM_36km.PHOTDIAG1.36km_2016029 set RJ2file = CCTM_36km.PHOTDIAG2.36km_2016029 set SSEfile = CCTM_36km.SSEMIS.36km_2016029 set DSEfile = CCTM_36km.DUSTEMIS.36km_2016029 setenv FLOOR_FILE /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/FLOOR_36km_2016029 source outck.q setenv CTM_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016029 -v setenv A_CONC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016029 -v setenv CTM_DRY_DEP_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016029 -v setenv CTM_DEPV_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016029 -v setenv CTM_PT3D_DIAG /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016029 -v BIO1file: Undefined variable. if ( 0 ) then setenv EMISDATE 20160129 if ( 0 ) then set EMISpath = /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km set EMISfile = egts_36km_aero6_nodust_meic_reas_20160129.ncf endif setenv EMIS_1 /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160129.ncf if ( -e /home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160129.ncf.gz ) then if ( 0 ) then if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CGRID.36km_2016028 ) then set ICpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon set ICFILE = ICON_36km_cb05_profile endif setenv INIT_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile setenv INIT_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile set BCpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon set BCFILE = BCON_36km_cb05_profile setenv BNDY_GASC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_AERO_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_NONR_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv BNDY_TRAC_1 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile setenv GRID_DOT_2D /media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-29 setenv GRID_CRO_2D /media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-29 setenv MET_CRO_2D /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-29 setenv MET_CRO_3D /media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-29 setenv MET_DOT_3D /media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-29 setenv MET_BDY_3D /media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-29 set TR_DVpath = /media/catalyst/Catalyst/mcip/36km set TR_DVfile = /media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-29 set JVALpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013 set JVALfile = JTABLE_2016029 setenv XJ_DATA /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/jproc_2013/JTABLE_2016029 set OMIpath = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP setenv OMI /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/OMI.dat setenv CTM_STDATE 2016029 setenv CTM_STTIME 010000 setenv CTM_RUNLEN 230000 setenv CTM_TSTEP 010000 setenv CTM_PROGNAME CCTM_36km set test = `ls CTM_LOG_???.${CTM_APPL}` ls: No match. if ( != ) then ls -l /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe -rwxr-xr-x 1 catalyst catalyst 13169352 Aug 26 15:13 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe size /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe text data bss dec hex filename 6817736 5079856 76013800 87911392 53d6be0 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe unlimit limit cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 4096 memorylocked 16384 kbytes maxproc 63329 maxlocks unlimited maxsignal 63329 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited set MPI = /usr/bin set MPIRUN = /usr/bin/mpirun mpirun -np 8 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/CCTM_36km.exe This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2013 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2016 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 netCDF version 4.1.3 of Apr 30 2019 21:29:51 $ EXECUTION_ID: CCTM_36km Value for GRID_NAME: '36km' Value for GRID_NAME: '36km' File "GRIDDESC" opened for input on unit: 99 /home/catalyst/Desktop/Build_WRF/Megan/megan/megan_china_v2.10/work/GRIDDESC_36km Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE "MET_CRO_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO3D_2016-01-29" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles NetCDF ID: 65536 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 GC Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/GC_cb05e51_ae6_aq.nml AE Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/AE_cb05e51_ae6_aq.nml NR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/NR_cb05e51_ae6_aq.nml TR Species Namelist: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_36km_gcc7.3.0/Species_Table_TR_0.nml -=- MPP Processor-to-Subdomain Map -=- ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 24 1: 24 40 1: 40 | | 1 24 25: 48 40 1: 40 | | 2 24 49: 72 40 1: 40 | | 3 23 73: 95 40 1: 40 | | 4 24 1: 24 39 41: 79 | | 5 24 25: 48 39 41: 79 | | 6 24 49: 72 39 41: 79 | | 7 23 73: 95 39 41: 79 | |__________________________________________________| Value for CTM_PROCAN: N returning FALSE PA_DATAGEN: Process Analysis is not activated Value for CTM_WVEL: Y returning TRUE Value for CTM_TSTEP: 10000 Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_PROGNAME: 'CCTM_36km' Value for CTM_STDATE: 2016029 Value for CTM_STTIME: 10000 Value for CTM_RUNLEN: 230000 "GRID_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-29" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 131072 opened as READONLY Time-independent data. "INIT_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 196608 opened as READONLY Time-independent data. IC/BC Factors used for transported gas-phase species 1 NO2 1.0000 2 NO 1.0000 No IC found for species O in INIT_GASC_1; set to 1.00E-30 3 O3 1.0000 4 NO3 1.0000 No IC found for species O1D in INIT_GASC_1; set to 1.00E-30 5 OH 1.0000 6 HO2 1.0000 7 N2O5 1.0000 8 HNO3 1.0000 9 HONO 1.0000 10 PNA 1.0000 11 H2O2 1.0000 No IC found for species XO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2N in INIT_GASC_1; set to 1.00E-30 No IC found for species NTROH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRALK in INIT_GASC_1; set to 1.00E-30 12 ROOH 1.0000 13 ALD2 1.0000 No IC found for species ALDX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPX in INIT_GASC_1; set to 1.00E-30 No IC found for species IEPOX in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPO2 in INIT_GASC_1; set to 1.00E-30 14 IOLE 1.0000 No IC found for species IEPXO2 in INIT_GASC_1; set to 1.00E-30 15 MGLY 1.0000 16 FORM 1.0000 17 FACD 1.0000 18 CO 1.0000 19 PAR 1.0000 20 C2O3 1.0000 No IC found for species MEO2 in INIT_GASC_1; set to 1.00E-30 21 AACD 1.0000 22 MEPX 1.0000 No IC found for species MEOH in INIT_GASC_1; set to 1.00E-30 No IC found for species HCO3 in INIT_GASC_1; set to 1.00E-30 23 PAN 1.0000 24 PACD 1.0000 No IC found for species CXO3 in INIT_GASC_1; set to 1.00E-30 25 PANX 1.0000 No IC found for species ROR in INIT_GASC_1; set to 1.00E-30 26 OLE 1.0000 No IC found for species NALKO2 in INIT_GASC_1; set to 1.00E-30 27 ETH 1.0000 28 TOL 1.0000 29 CRES 1.0000 No IC found for species TO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLRO2 in INIT_GASC_1; set to 1.00E-30 30 OPEN 1.0000 No IC found for species CRO in INIT_GASC_1; set to 1.00E-30 No IC found for species CAT1 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRON in INIT_GASC_1; set to 1.00E-30 No IC found for species CRNO in INIT_GASC_1; set to 1.00E-30 No IC found for species CRN2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species OPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species CAO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species OPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLMN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NAPH in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHRO2 in INIT_GASC_1; set to 1.00E-30 31 ISOP 1.0000 No IC found for species ISPD in INIT_GASC_1; set to 1.00E-30 No IC found for species ISOPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRM in INIT_GASC_1; set to 1.00E-30 No IC found for species MACO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRI in INIT_GASC_1; set to 1.00E-30 No IC found for species TERP in INIT_GASC_1; set to 1.00E-30 No IC found for species TRPRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XO2T in INIT_GASC_1; set to 1.00E-30 32 SO2 1.0000 33 SULF 1.0000 No IC found for species SULRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species ETOH in INIT_GASC_1; set to 1.00E-30 34 ETHA 1.0000 No IC found for species CL2 in INIT_GASC_1; set to 1.00E-30 No IC found for species CL in INIT_GASC_1; set to 1.00E-30 No IC found for species HOCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLO in INIT_GASC_1; set to 1.00E-30 No IC found for species FMCL in INIT_GASC_1; set to 1.00E-30 No IC found for species HCL in INIT_GASC_1; set to 1.00E-30 No IC found for species CLNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species XYLHRXN in INIT_GASC_1; set to 1.00E-30 35 BENZENE 1.0000 No IC found for species BENZRO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species BNZHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQ in INIT_GASC_1; set to 1.00E-30 No IC found for species SESQRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHNRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species PAHHRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species SOAALK in INIT_GASC_1; set to 1.00E-30 No IC found for species ALKRXN in INIT_GASC_1; set to 1.00E-30 No IC found for species MAPAN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCN in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRCNOH in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRPX in INIT_GASC_1; set to 1.00E-30 No IC found for species NOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NCNOHO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRMO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species NTRIO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PIJ in INIT_GASC_1; set to 1.00E-30 No IC found for species H2NO3PK in INIT_GASC_1; set to 1.00E-30 No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30 No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30 No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30 No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30 No IC found for species MXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species OXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species PXYL in INIT_GASC_1; set to 1.00E-30 No IC found for species APIN in INIT_GASC_1; set to 1.00E-30 No IC found for species BPIN in INIT_GASC_1; set to 1.00E-30 36 HG 1.0000 No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30 37 HGIIGAS 1.0000 No IC found for species VLVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVPO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species VIVPO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VLVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO1 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO2 in INIT_GASC_1; set to 1.00E-30 No IC found for species VSVOO3 in INIT_GASC_1; set to 1.00E-30 No IC found for species PCVOC in INIT_GASC_1; set to 1.00E-30 No IC found for species PCSOARXN in INIT_GASC_1; set to 1.00E-30 GC loaded into CGRID Density*Jacobian loaded into CGRID "INIT_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 262144 opened as READONLY Time-independent data. IC/BC Factors used for transported aerosol species 38 ASO4J 1.0000 39 ASO4I 1.0000 No IC found for species ANH4J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4I in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3I in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK1J in INIT_AERO_1; set to 1.00E-30 No IC found for species AALK2J in INIT_AERO_1; set to 1.00E-30 40 AXYL1J 1.0000 41 AXYL2J 1.0000 42 AXYL3J 1.0000 43 ATOL1J 1.0000 44 ATOL2J 1.0000 45 ATOL3J 1.0000 46 ABNZ1J 1.0000 47 ABNZ2J 1.0000 48 ABNZ3J 1.0000 No IC found for species APAH1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH2J in INIT_AERO_1; set to 1.00E-30 No IC found for species APAH3J in INIT_AERO_1; set to 1.00E-30 49 ATRP1J 1.0000 50 ATRP2J 1.0000 51 AISO1J 1.0000 52 AISO2J 1.0000 53 ASQTJ 1.0000 No IC found for species AORGCJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AECI in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AOTHRI in INIT_AERO_1; set to 1.00E-30 No IC found for species AFEJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AALJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ASIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ATIJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMGJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AKJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AMNJ in INIT_AERO_1; set to 1.00E-30 54 ACORS 1.0000 55 ASOIL 1.0000 56 NUMATKN 1.0000 57 NUMACC 1.0000 58 NUMCOR 1.0000 59 SRFATKN 1.0000 60 SRFACC 1.0000 61 SRFCOR 1.0000 No IC found for species AH2OJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OI in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPJ in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPI in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ANAI in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLI in INIT_AERO_1; set to 1.00E-30 No IC found for species ASEACAT in INIT_AERO_1; set to 1.00E-30 No IC found for species ACLK in INIT_AERO_1; set to 1.00E-30 No IC found for species ASO4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANH4K in INIT_AERO_1; set to 1.00E-30 No IC found for species ANO3K in INIT_AERO_1; set to 1.00E-30 No IC found for species AH2OK in INIT_AERO_1; set to 1.00E-30 No IC found for species AH3OPK in INIT_AERO_1; set to 1.00E-30 62 AISO3J 1.0000 63 AOLGAJ 1.0000 64 AOLGBJ 1.0000 No IC found for species APCSOJ in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ALVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVPO3J in INIT_AERO_1; set to 1.00E-30 No IC found for species AIVPO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO1I No IC found for species ALVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCI in INIT_AERO_1; Look for ALVOO2I No IC found for species ALVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1I in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2I in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO1J No IC found for species ALVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species APOCJ in INIT_AERO_1; Look for ALVOO2J No IC found for species ALVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO1J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO2J in INIT_AERO_1; set to 1.00E-30 No IC found for species ASVOO3J in INIT_AERO_1; set to 1.00E-30 AE loaded into CGRID NOT FATAL: Optional Species APHGJ Not found in AE namelist. --- Aero Species Mapped --- "INIT_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 327680 opened as READONLY Time-independent data. IC/BC Factors used for transported non-reactive gas species 65 NH3 1.0000 No IC found for species SV_ALK1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_ALK2 in INIT_NONR_1; set to 1.00E-30 66 SV_XYL1 1.0000 67 SV_XYL2 1.0000 68 SV_TOL1 1.0000 69 SV_TOL2 1.0000 70 SV_BNZ1 1.0000 71 SV_BNZ2 1.0000 No IC found for species SV_PAH1 in INIT_NONR_1; set to 1.00E-30 No IC found for species SV_PAH2 in INIT_NONR_1; set to 1.00E-30 72 SV_TRP1 1.0000 73 SV_TRP2 1.0000 74 SV_ISO1 1.0000 75 SV_ISO2 1.0000 76 SV_SQT 1.0000 No IC found for species LV_PCSOG in INIT_NONR_1; set to 1.00E-30 NR loaded into CGRID "CTM_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.CONC.36km_2016029" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 219 vbles NetCDF ID: 393216 opened as VOLATILE READWRITE Starting date and time 2016029:000000 (0:00:00 Jan. 29, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 2 Gas Chem species saved to CONC file: Value for IOAPI_LOG_WRITE: F returning FALSE Value for IOAPI_LOG_WRITE: F returning FALSE 1 ( 1) NO2 2 ( 2) NO 3 ( 3) O 4 ( 4) O3 5 ( 5) NO3 6 ( 6) O1D 7 ( 7) OH 8 ( 8) HO2 9 ( 9) N2O5 10 ( 10) HNO3 11 ( 11) HONO 12 ( 12) PNA 13 ( 13) H2O2 14 ( 14) XO2 15 ( 15) XO2N 16 ( 16) NTROH 17 ( 17) NTRALK 18 ( 18) ROOH 19 ( 19) ALD2 20 ( 20) ALDX 21 ( 21) ISOPX 22 ( 22) IEPOX 23 ( 23) ISOPO2 24 ( 24) IOLE 25 ( 25) IEPXO2 26 ( 26) MGLY 27 ( 27) FORM 28 ( 28) FACD 29 ( 29) CO 30 ( 30) PAR 31 ( 31) C2O3 32 ( 32) MEO2 33 ( 33) AACD 34 ( 34) MEPX 35 ( 35) MEOH 36 ( 36) HCO3 37 ( 37) PAN 38 ( 38) PACD 39 ( 39) CXO3 40 ( 40) PANX 41 ( 41) ROR 42 ( 42) OLE 43 ( 43) NALKO2 44 ( 44) ETH 45 ( 45) TOL 46 ( 46) CRES 47 ( 47) TO2 48 ( 48) TOLRO2 49 ( 49) OPEN 50 ( 50) CRO 51 ( 51) CAT1 52 ( 52) CRON 53 ( 53) CRNO 54 ( 54) CRN2 55 ( 55) CRPX 56 ( 56) OPO3 57 ( 57) CAO2 58 ( 58) OPAN 59 ( 59) XYLMN 60 ( 60) XYLRO2 61 ( 61) NAPH 62 ( 62) PAHRO2 63 ( 63) ISOP 64 ( 64) ISPD 65 ( 65) NTRM 66 ( 66) MACO3 67 ( 67) NTRI 68 ( 68) TERP 69 ( 69) XO2T 70 ( 70) SO2 71 ( 71) SULF 72 ( 72) ETOH 73 ( 73) ETHA 74 ( 74) CL2 75 ( 75) CL 76 ( 76) HOCL 77 ( 77) CLO 78 ( 78) FMCL 79 ( 79) HCL 80 ( 80) CLNO2 81 ( 81) BENZENE 82 ( 82) BENZRO2 83 ( 83) SESQ 84 ( 84) SOAALK 85 ( 85) MAPAN 86 ( 86) NTRCN 87 ( 87) NTRCNOH 88 ( 88) NTRPX 89 ( 89) NOHO2 90 ( 90) NCNO2 91 ( 91) NCNOHO2 92 ( 92) NTRMO2 93 ( 93) NTRIO2 94 ( 94) H2NO3PIJ 95 ( 95) H2NO3PK 96 ( 96) FORM_PRIMARY 97 ( 97) ALD2_PRIMARY 98 ( 98) BUTADIENE13 99 ( 99) ACROLEIN 100 (100) ACRO_PRIMARY 101 (101) TOLU 102 (102) MXYL 103 (103) OXYL 104 (104) PXYL 105 (105) APIN 106 (106) BPIN 107 (107) HG 108 (108) HGIIGAS 109 (109) VLVPO1 110 (110) VSVPO1 111 (111) VSVPO2 112 (112) VSVPO3 113 (113) VIVPO1 114 (114) VLVOO1 115 (115) VLVOO2 116 (116) VSVOO1 117 (117) VSVOO2 118 (118) VSVOO3 119 (119) PCVOC Aerosol species saved to CONC file: 1 (120) ASO4J 2 (121) ASO4I 3 (122) ANH4J 4 (123) ANH4I 5 (124) ANO3J 6 (125) ANO3I 7 (126) AALK1J 8 (127) AALK2J 9 (128) AXYL1J 10 (129) AXYL2J 11 (130) AXYL3J 12 (131) ATOL1J 13 (132) ATOL2J 14 (133) ATOL3J 15 (134) ABNZ1J 16 (135) ABNZ2J 17 (136) ABNZ3J 18 (137) APAH1J 19 (138) APAH2J 20 (139) APAH3J 21 (140) ATRP1J 22 (141) ATRP2J 23 (142) AISO1J 24 (143) AISO2J 25 (144) ASQTJ 26 (145) AORGCJ 27 (146) AECJ 28 (147) AECI 29 (148) AOTHRJ 30 (149) AOTHRI 31 (150) AFEJ 32 (151) AALJ 33 (152) ASIJ 34 (153) ATIJ 35 (154) ACAJ 36 (155) AMGJ 37 (156) AKJ 38 (157) AMNJ 39 (158) ACORS 40 (159) ASOIL 41 (160) NUMATKN 42 (161) NUMACC 43 (162) NUMCOR 44 (163) SRFATKN 45 (164) SRFACC 46 (165) SRFCOR 47 (166) AH2OJ 48 (167) AH2OI 49 (168) AH3OPJ 50 (169) AH3OPI 51 (170) ANAJ 52 (171) ANAI 53 (172) ACLJ 54 (173) ACLI 55 (174) ASEACAT 56 (175) ACLK 57 (176) ASO4K 58 (177) ANH4K 59 (178) ANO3K 60 (179) AH2OK 61 (180) AH3OPK 62 (181) AISO3J 63 (182) AOLGAJ 64 (183) AOLGBJ 65 (184) APCSOJ 66 (185) ALVPO1I 67 (186) ASVPO1I 68 (187) ASVPO2I 69 (188) ALVPO1J 70 (189) ASVPO1J 71 (190) ASVPO2J 72 (191) ASVPO3J 73 (192) AIVPO1J 74 (193) ALVOO1I 75 (194) ALVOO2I 76 (195) ASVOO1I 77 (196) ASVOO2I 78 (197) ALVOO1J 79 (198) ALVOO2J 80 (199) ASVOO1J 81 (200) ASVOO2J 82 (201) ASVOO3J Non-reactive species saved to CONC file: 1 (202) NH3 2 (203) SV_ALK1 3 (204) SV_ALK2 4 (205) SV_XYL1 5 (206) SV_XYL2 6 (207) SV_TOL1 7 (208) SV_TOL2 8 (209) SV_BNZ1 9 (210) SV_BNZ2 10 (211) SV_PAH1 11 (212) SV_PAH2 12 (213) SV_TRP1 13 (214) SV_TRP2 14 (215) SV_ISO1 15 (216) SV_ISO2 16 (217) SV_SQT 17 (218) LV_PCSOG Derived Vert Vel Comp species saved to CONC file: W_VEL Timestep written to CTM_CONC_1 for date and time 2016029:010000 from timestep on initial data files for date and time 2016029:010000 Value for AVG_FILE_ENDTIME not defined;returning default: FALSE Flag to Override default beginning time timestamp for ACONC ... Using default: 10000 "A_CONC_1" opened as OLD:READ-WRITE File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.ACONC.36km_2016029" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 233 vbles NetCDF ID: 458752 opened as VOLATILE READWRITE Starting date and time 2016029:000000 (0:00:00 Jan. 29, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 Value for CLD_DIAG not defined;returning default: FALSE Output cloud diagnostic files? (Y/N) Environment variable not set ... Using default: F "CTM_WET_DEP_1" opened as OLD:READ-WRITE File name "CTM_WET_DEP_1" File type GRDDED3 Execution ID "CCTM_36km" Grid name "36km" Dimensions: 79 rows, 95 cols, 1 lays, 138 vbles NetCDF ID: 524288 opened as READWRITE Starting date and time 2016002:010000 (1:00:00 Jan. 2, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 0 after INITSCEN G 1.2201706E-01 A 1.2130194E+09 N 9.7443575E-05 = = = = = = = = = = = = = = Start FLCHECK = = = = = = = = = = = = = = Value for FL_ERR_STOP: N returning FALSE Value for CTM_RUNLEN: 230000 "GRID_DOT_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDDOT2D_2016-01-29" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_DOT" Dimensions: 80 rows, 96 cols, 1 lays, 9 vbles NetCDF ID: 589824 opened as READONLY Time-independent data. Checking header data for file: GRID_DOT_2D Checking header data for file: GRID_CRO_2D GRID_CRO_3D :GRID_CRO_3D >>--->> WARNING in subroutine OPEN3 File not available. GRID_BDY_2D :GRID_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "EMIS_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/LIBRARIES/allocation/PM2.5/emiss2016_36km/egts_36km_aero6_nodust_meic_reas_20160129.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 12 lays, 63 vbles NetCDF ID: 655360 opened as READONLY Starting date and time 2016030:000000 (0:00:00 Jan. 30, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 24 Checking header data for file: EMIS_1 Starting time not on file "OCEAN_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/ocean/2018/meic/china.36km.oceanfile.new_ola.ncf" File type GRDDED3 Execution ID "????????????????" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 1 vbles NetCDF ID: 720896 opened as READONLY Time-independent data. Checking header data for file: OCEAN_1 MET_BDY_2D :MET_BDY_2D >>--->> WARNING in subroutine OPEN3 File not available. "MET_BDY_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METBDY3D_2016-01-29" File type BNDARY3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 17 lays, 18 vbles, 1 cells thick NetCDF ID: 786432 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_BDY_3D "MET_DOT_3D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METDOT3D_2016-01-29" File type GRDDED3 Execution ID "mcip" Grid name "METDOT_36km_DOT" Dimensions: 80 rows, 96 cols, 17 lays, 6 vbles NetCDF ID: 851968 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_DOT_3D "MET_CRO_2D" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/METCRO2D_2016-01-29" File type GRDDED3 Execution ID "mcip" Grid name "METCRO_36km_CROS" Dimensions: 79 rows, 95 cols, 1 lays, 35 vbles NetCDF ID: 917504 opened as READONLY Starting date and time 2016001:010000 (1:00:00 Jan. 1, 2016) Timestep 010000 (1:00:00 hh:mm:ss) Maximum current record number 738 Checking header data for file: MET_CRO_2D Checking header data for file: MET_CRO_3D Checking header data for file: CTM_CONC_1 CTM_DRY_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DRYDEP.36km_2016029 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: CTM_WET_DEP_1 CTM_WET_DEP_2 :CTM_WET_DEP_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SSEMIS_1 :CTM_SSEMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DUST_EMIS_1 :CTM_DUST_EMIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_VIS_1 :CTM_VIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PMDIAG_1 :CTM_PMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AOD_1 :CTM_AOD_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_1 :CTM_IPR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_2 :CTM_IPR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IPR_3 :CTM_IPR_3 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_1 :CTM_IRR_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_2 :CTM_IRR_2 >>--->> WARNING in subroutine OPEN3 File not available. CTM_IRR_3 :CTM_IRR_3 >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: A_CONC_1 S_CGRID :S_CGRID >>--->> WARNING in subroutine OPEN3 File not available. Checking header data for file: INIT_GASC_1 "BNDY_GASC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 983040 opened as READONLY Time-independent data. Checking header data for file: BNDY_GASC_1 Checking header data for file: INIT_AERO_1 "BNDY_AERO_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1048576 opened as READONLY Time-independent data. Checking header data for file: BNDY_AERO_1 Checking header data for file: INIT_NONR_1 "BNDY_NONR_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1114112 opened as READONLY Time-independent data. Checking header data for file: BNDY_NONR_1 "INIT_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/icon/scripts/icon/ICON_36km_cb05_profile" File type GRDDED3 Execution ID "ICON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles NetCDF ID: 1179648 opened as READONLY Time-independent data. Checking header data for file: INIT_TRAC_1 "BNDY_TRAC_1" opened as OLD:READ-ONLY File name "/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/bcon/scripts/bcon/BCON_36km_cb05_profile" File type BNDARY3 Execution ID "BCON_36km_profile.exe" Grid name "36km" Dimensions: 79 rows, 95 cols, 17 lays, 76 vbles, 1 cells thick NetCDF ID: 1245184 opened as READONLY Time-independent data. Checking header data for file: BNDY_TRAC_1 DEPV_TRAC_1 :DEPV_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. EMIS_TRAC_1 :EMIS_TRAC_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.DEPV.36km_2016029 >>--->> WARNING in subroutine OPEN3 File not available. CTM_PT3D_DIAG :/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/CCTM_36km.PT3D.36km_2016029 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_1 :CTM_RJ_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_RJ_2 :CTM_RJ_2 >>--->> WARNING in subroutine OPEN3 File not available. INIT_MEDC_1 :INIT_MEDC_1 >>--->> WARNING in subroutine OPEN3 File not available. MEDIA_CONC :MEDIA_CONC >>--->> WARNING in subroutine OPEN3 File not available. REGIONS_1 :REGIONS_1 >>--->> WARNING in subroutine OPEN3 File not available. INIT_GASC_S :INIT_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_AERO_S :INIT_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_NONR_S :INIT_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_GASC_S :BNDY_GASC_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_AERO_S :BNDY_AERO_S >>--->> WARNING in subroutine OPEN3 File not available. BNDY_NONR_S :BNDY_NONR_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_SENS_1 :CTM_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. A_SENS_1 :A_SENS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SWETDEP_1 :CTM_SWETDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_SDRYDEP_1 :CTM_SDRYDEP_1 >>--->> WARNING in subroutine OPEN3 File not available. "DUST_LU_1" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-29" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1310720 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_1 "DUST_LU_2" opened as OLD:READ-ONLY File name "/media/catalyst/Catalyst/mcip/36km/GRIDCRO2D_2016-01-29" File type GRDDED3 Execution ID "mcip" Grid name "GRIDOUT_36km_CRO" Dimensions: 79 rows, 95 cols, 1 lays, 28 vbles NetCDF ID: 1376256 opened as READONLY Time-independent data. Checking header data for file: DUST_LU_2 CTM_DEPV_MOS :CTM_DEPV_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_MOS :CTM_DRY_DEP_MOS >>--->> WARNING in subroutine OPEN3 File not available. CTM_DRY_DEP_FST :CTM_DRY_DEP_FST >>--->> WARNING in subroutine OPEN3 File not available. CTM_DEPV_FST :CTM_DEPV_FST >>--->> WARNING in subroutine OPEN3 File not available. E2C_FERT :E2C_FERT >>--->> WARNING in subroutine OPEN3 File not available. E2C_SOIL :E2C_SOIL >>--->> WARNING in subroutine OPEN3 File not available. BELD4_LU :BELD4_LU >>--->> WARNING in subroutine OPEN3 File not available. CTM_SD_TS :CTM_SD_TS >>--->> WARNING in subroutine OPEN3 File not available. CTM_VDIFF_DIAG :CTM_VDIFF_DIAG >>--->> WARNING in subroutine OPEN3 File not available. CTM_VSED_DIAG :CTM_VSED_DIAG >>--->> WARNING in subroutine OPEN3 File not available. BNDY_TRAC_S :BNDY_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. INIT_TRAC_S :INIT_TRAC_S >>--->> WARNING in subroutine OPEN3 File not available. CTM_MGEM_1 :CTM_MGEM_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_APMDIAG_1 :CTM_APMDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_AVIS_1 :CTM_AVIS_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_1 :CTM_LTNGDIAG_1 >>--->> WARNING in subroutine OPEN3 File not available. CTM_LTNGDIAG_2 :CTM_LTNGDIAG_2 >>--->> WARNING in subroutine OPEN3 File not available. >>--->> WARNING in subroutine FLCHECK on PE 000 Inconsistent header data on input files M3WARN: DTBUF 1:00:00 Jan. 29, 2016 (2016029:010000) = = = = = = = = = = = = = = End FLCHECK = = = = = = = = = = = = = = Value for CTM_MAXSYNC not defined; returning default: 720 Maximum Synchronization Time Step (sec) Value for CTM_MINSYNC not defined; returning default: 60 Minimum Synchronization Time Step (sec) Value for CTM_ADV_CFL not defined; returning default : 0.75 Maximum CFL number allowed Value for SIGMA_SYNC_TOP not defined; returning default : 0.7 Minimum layer limit for which adv = sync Value for ADV_HDIV_LIM not defined; returning default : 0.9 Maximum horiz. div. limit for adv step adjustment Top layer thru which sync step determined: 12 From ADVSTEP - date/time: 2016029/010000 Computed synchronization step (HHMMSS): 001200 Number of Synchronization steps: 5 Layer Advection per Sync Step (HHMMSS) Step 17 000600 2 16 000400 3 15 000600 2 14 000600 2 13 001200 1 12 001200 1 11 001200 1 10 001200 1 9 001200 1 8 001200 1 7 001200 1 6 001200 1 5 001200 1 4 001200 1 3 001200 1 2 001200 1 1 001200 1 Value for CTM_CKSUM: N returning FALSE Value for CTM_ILDEPV: Y returning TRUE Value for CTM_ABFLUX: N returning FALSE Value for CTM_SFC_HONO: Y returning TRUE Value for CTM_MOSAIC: N returning FALSE Value for CTM_HGBIDI: N returning FALSE Value for CTM_DEPV_FILE: N returning FALSE Flag for writing the DEPV diagnostic file DEPV_INIT: writes GAS DEPV values to CTM_DEPV_FILE DEPV_INIT: completed INIT_GAS_DV block Value for KZMIN: Y returning TRUE >>--->> WARNING in subroutine INIT_MET:INTERPX Variable "SURF" not in file OCEAN_1 M3WARN: DTBUF 1:00:00 Jan. 29, 2016 (2016029:010000) *** ERROR ABORT in subroutine INIT_MET on PE 000 Error interpolating variable SURF from OCEAN_1 Date and time 1:00:00 Jan. 29, 2016 (2016029:010000) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 5 in communicator MPI_COMM_WORLD with errorcode 21913. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [catalyst-Precision-Tower-3620:16639] 2 more processes have sent help message help-mpi-api.txt / mpi-abort [catalyst-Precision-Tower-3620:16639] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 12.427u 16.210s 0:14.26 200.7% 0+0k 0+246608io 30pf+0w set TASKMAP = /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines cat /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/machines n001:24 mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016029 mv ./CTM_LOG_001.36km_2016029 ./CTM_LOG_002.36km_2016029 ./CTM_LOG_003.36km_2016029 ./CTM_LOG_004.36km_2016029 ./CTM_LOG_005.36km_2016029 ./CTM_LOG_006.36km_2016029 ./CTM_LOG_007.36km_2016029 /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/cctm_36km/logs/2016029 @ i = 27 + 1 end while ( 28 < 28 ) date Fri Aug 30 00:52:45 CST 2019 exit