echo Start Model Run At  `date`
date
setenv CTM_DIAG_LVL 0
if ( ! 1 ) then
if ( ! 1 ) then
cd ~/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/
source config_cmaq_stamp2_12US2_testrun_myfix_22may2020.csh
setenv CMAQ_HOME /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020
setenv CMAQ_REPO /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_REPO
setenv CMAQ_DATA /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/data
if ( ! -d /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/data ) mkdir -p /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/data
cd /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020
if ( 0 == 1 ) then
if ( 0 == 2 ) then
if ( 0 == 0 ) then
if ( ! 1 ) then
if ( ! 1 ) then
else
echo Compiler is set to intel
switch ( intel )
setenv IOAPI_INCL_DIR /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/ioapi3.2_5mar2020/ioapi/fixed_src
setenv IOAPI_LIB_DIR /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/ioapi3.2_5mar2020/Linux2_x86_64ifort
setenv NETCDF_LIB_DIR /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/lib
setenv NETCDF_INCL_DIR /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/include
setenv NETCDFF_LIB_DIR /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/lib
setenv NETCDFF_INCL_DIR /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/include
setenv MPI_LIB_DIR /opt/intel/compilers_and_libraries_2017.4.196/linux/mpi/intel64
setenv myFC mpiifort
setenv myCC icc
setenv myFSTD -O3 -fno-alias -mp1 -fp-model source
setenv myDBG -O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback
setenv myLINK_FLAG
setenv myFFLAGS -fixed -132
setenv myFRFLAGS -free
setenv myCFLAGS -O2
setenv extra_lib 
setenv mpi_lib 
breaksw
setenv compilerString intel
if ( Empty != Empty ) then
setenv netcdf_lib -lnetcdf
setenv netcdff_lib -lnetcdff
setenv ioapi_lib -lioapi
setenv pnetcdf_lib -lpnetcdf
setenv system `uname -m`
uname -m
setenv bld_os `uname -s``uname -r | cut -d. -f1`
uname -s
cut -d. -f1
uname -r
setenv lib_basedir /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib
setenv CMAQ_LIB /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel
setenv MPI_DIR /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/mpi
setenv NETCDF_DIR /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdf
setenv NETCDFF_DIR /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff
setenv PNETCDF_DIR /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/pnetcdf
setenv IOAPI_DIR /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/ioapi
if ( ! -d /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel ) mkdir -p /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel
if ( -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/mpi ) rm -rf /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/mpi
rm -rf /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/mpi
ln -s /opt/intel/compilers_and_libraries_2017.4.196/linux/mpi/intel64 /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/mpi
if ( ! -d /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdf ) mkdir /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdf
if ( ! -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdf/lib ) ln -sfn /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/lib /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdf/lib
if ( ! -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdf/include ) ln -sfn /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/include /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdf/include
if ( ! -d /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff ) mkdir /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff
if ( ! -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff/lib ) ln -sfn /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/lib /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff/lib
if ( ! -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff/include ) ln -sfn /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/include /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff/includ
ln -sfn /work/05774/tg850734/stampede2/cmaq_libs_4mar2020/netcdf4.1.3_5mar2020/netcdf/include /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff/includ
if ( ! -d /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/ioapi ) then
if ( ! -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdf/lib/libnetcdf.a ) then
if ( ! -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/netcdff/lib/libnetcdff.a ) then
if ( ! -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/ioapi/lib/libioapi.a ) then
if ( ! -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/lib/x86_64/intel/ioapi/lib/m3utilio.mod ) then
setenv EXEC_ID Linux3_x86_64intel
cd CCTM/scripts
set VRSN = v531
set PROC = mpi
set MECH = cb6r3_ae7_aq
set EMIS = 2016fh
set APPL = 2016_CONUS
setenv RUNID v531_intel_2016_CONUS
set BLD = /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel
set EXEC = CCTM_v531.exe
if ( 0 != 0 ) set echo
setenv SCRPATH ~/scratch/cmaq_run_18may2020
setenv WORKDIR /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_work
setenv OUTDIR /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out
setenv INPDIR /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in
setenv LOGDIR /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_logs
setenv NMLpath /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel
echo 
echo Working Directory is /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_work
echo Build Directory is /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel
echo Output Directory is /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out
echo Log Directory is /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_logs
echo Executable Name is CCTM_v531.exe
setenv NEW_START TRUE
set START_DATE = 2014-01-02
set END_DATE = 2014-01-08
set STTIME = 030000
set NSTEPS = 240000
set TSTEP = 010000
if ( mpi == serial ) then
@ NPCOL = 8
@ NPROW = 6
@ NPROCS = 8 * 6
setenv NPCOL_NPROW 8 6
endif
setenv EXECUTION_ID CMAQ_CCTMv531_`id -u -n`_`date -u +%Y%m%d_%H%M%S_%N`
id -u -n
date -u +%Y%m%d_%H%M%S_%N
echo 
echo ---CMAQ EXECUTION ID: CMAQ_CCTMv531_tg850734_20200522_191722_337778124 ---
set CLOBBER_DATA = TRUE
if ( ! -e /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_logs ) then
setenv PRINT_PROC_TIME Y
setenv STDOUT T
setenv GRID_NAME 12US2
setenv GRIDDESC /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/GRIDDESC
set NZ = 34
set NX = `grep -A 1 ${GRID_NAME} ${GRIDDESC} | tail -1 | sed 's/  */ /g' | cut -d',' -f6`
grep -A 1 12US2 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/GRIDDESC
tail -1
cut -d, -f6
sed s/  */ /g
set NY = `grep -A 1 ${GRID_NAME} ${GRIDDESC} | tail -1 | sed 's/  */ /g' | cut -d',' -f7`
grep -A 1 12US2 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/GRIDDESC
tail -1
cut -d, -f7
sed s/  */ /g
set NCELLS = `echo "${NX} * ${NY} * ${NZ}" | bc -l`
bc -l
echo 396 * 246 * 34
setenv CONC_SPCS ALL
setenv CONC_BLEV_ELEV
setenv AVG_CONC_SPCS ALL
setenv ACONC_BLEV_ELEV
setenv AVG_FILE_ENDTIME N
setenv CTM_MAXSYNC 300
setenv CTM_MINSYNC 60
setenv SIGMA_SYNC_TOP 0.7
setenv CTM_ADV_CFL 0.95
setenv CTM_OCEAN_CHEM Y
setenv CTM_WB_DUST Y
setenv CTM_WBDUST_BELD BELD3
setenv CTM_LTNG_NO Y
setenv KZMIN Y
setenv CTM_MOSAIC N
setenv CTM_FST N
setenv PX_VERSION Y
setenv CLM_VERSION N
setenv NOAH_VERSION N
setenv CTM_ABFLUX Y
setenv CTM_BIDI_FERT_NH3 T
setenv CTM_HGBIDI N
setenv CTM_SFC_HONO Y
setenv CTM_GRAV_SETL Y
setenv CTM_BIOGEMIS Y
setenv VERTEXT N
setenv VERTEXT_COORD_PATH /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_work/lonlat.csv
setenv IOAPI_LOG_WRITE F
setenv FL_ERR_STOP N
setenv PROMPTFLAG F
setenv IOAPI_OFFSET_64 YES
setenv IOAPI_CHECK_HEADERS N
setenv CTM_EMISCHK N
setenv EMISDIAG F
setenv EMISDIAG_SUM F
setenv CTM_CKSUM Y
setenv CLD_DIAG N
setenv CTM_PHOTDIAG N
setenv NLAYS_PHOTDIAG 1
setenv CTM_PMDIAG Y
setenv CTM_APMDIAG Y
setenv APMDIAG_BLEV_ELEV 1 1
setenv CTM_SSEMDIAG Y
setenv CTM_DUSTEM_DIAG Y
setenv CTM_DEPV_FILE Y
setenv VDIFF_DIAG_FILE Y
setenv LTNGDIAG Y
setenv B3GTS_DIAG Y
setenv CTM_WVEL Y
set ICpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/icbc
set BCpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/icbc
set EMISpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis
set EMISpath2 = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis
set IN_PTpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis
set IN_LTpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/lightning
set METpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met
set OMIpath = /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel
set LUpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface
set SZpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface
set rtarray = 
set TODAYG = 2014-01-02
set TODAYJ = `date -ud "${START_DATE}" +%Y%j`
date -ud 2014-01-02 +%Y%j
set START_DAY = 2014002
set STOP_DAY = `date -ud "${END_DATE}" +%Y%j`
date -ud 2014-01-08 +%Y%j
set NDAYS = 0
while ( 2014002 < = 2014008 )
set NDAYS = `echo "${NDAYS} + 1" | bc -l`
bc -l
echo 0 + 1
set YYYYMMDD = `date -ud "${TODAYG}" +%Y%m%d`
date -ud 2014-01-02 +%Y%m%d
set YYYYMM = `date -ud "${TODAYG}" +%Y%m`
date -ud 2014-01-02 +%Y%m
set YYYY = `date -ud "${TODAYG}" +%Y`
date -ud 2014-01-02 +%Y
set YYMMDD = `date -ud "${TODAYG}" +%y%m%d`
date -ud 2014-01-02 +%y%m%d
set YYYYJJJ = 2014002
@ emis_YYYYMMDD = 20140102 + 20000
set MM = `date -ud "${TODAYG}" +%m`
date -ud 2014-01-02 +%m
set YESTERDAY = `date -ud "${TODAYG}-1days" +%Y%m%d`
date -ud 2014-01-02-1days +%Y%m%d
echo 
echo Set up input and output files for Day 2014-01-02.
setenv CTM_APPL v531_intel_2016_CONUS_20140102
if ( ! -d /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out ) mkdir -p /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out
cp /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/CCTM_v531.cfg /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_v531_intel_2016_CONUS_20140102.cfg
if ( TRUE == true || TRUE == TRUE ) then
setenv ICFILE m3tshift_to_03hrs_on_18may2020_ic.12km.2014H1.01.cmaq.cb6r3_ae7.2014002.lst.hr0.ncf.15may2020
setenv INIT_MEDC_1 notused
setenv INITIAL_RUN Y
else
set BCFILE = m3tshift_to_03hrs_on_18may2020_bc.12km.2014H1.01.cmaq.cb6r3_ae7.2014002.lst.ncf.15may2020
set OMIfile = OMI_1979_to_2017.dat
set OPTfile = PHOT_OPTICS.dat
set mcip_datestamp = 15may2020
set DOM = d02
set ENS = H1
setenv GRID_BDY_2D /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/GRIDBDY2D_d02_2014H1_01_15may2020.nc
setenv GRID_CRO_2D /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/GRIDCRO2D_d02_2014H1_01_15may2020.nc
setenv GRID_CRO_3D /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/GRIDCRO3D_d02_2014H1_01_15may2020.nc
setenv GRID_DOT_2D /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/GRIDDOT2D_d02_2014H1_01_15may2020.nc
setenv MET_CRO_2D /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/METCRO2D_d02_2014H1_01_15may2020.nc
setenv MET_CRO_3D /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/METCRO3D_d02_2014H1_01_15may2020.nc
setenv MET_DOT_3D /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/METDOT3D_d02_2014H1_01_15may2020.nc
setenv MET_BDY_3D /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/METBDY3D_d02_2014H1_01_15may2020.nc
setenv LUFRAC_CRO /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/LUFRAC_CRO_d02_2014H1_01_15may2020.nc
setenv EMISSCTRL_NML /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/EmissCtrl_cb6r3_ae7_aq.nml
setenv CMAQ_MASKS /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/
set EMDATES = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/emis_dates/my2014/smk_merge_dates_201401.txt
set intable = `grep "^${YYYYMMDD}" $EMDATES`
grep ^20140102 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/emis_dates/my2014/smk_merge_dates_201401.txt
set Date = `echo $intable[1] | cut -d, -f1`
cut -d, -f1
echo 20140102,
set aveday_N = `echo $intable[2] | cut -d, -f1`
cut -d, -f1
echo 20140105,
set aveday_Y = `echo $intable[3] | cut -d, -f1`
cut -d, -f1
echo 20140102,
set mwdss_N = `echo $intable[4] | cut -d, -f1`
cut -d, -f1
echo 20140109,
set mwdss_Y = `echo $intable[5] | cut -d, -f1`
cut -d, -f1
echo 20140102,
set week_N = `echo $intable[6] | cut -d, -f1`
cut -d, -f1
echo 20140109,
set week_Y = `echo $intable[7] | cut -d, -f1`
cut -d, -f1
echo 20140102,
set all = `echo $intable[8] | cut -d, -f1`
cut -d, -f1
echo 20140102
set emis_minus_met = 20000
@ emis_aveday_N = 20140105 + 20000
@ emis_aveday_Y = 20140102 + 20000
@ emis_mwdss_N = 20140109 + 20000
@ emis_mwdss_Y = 20140102 + 20000
@ emis_week_N = 20140109 + 20000
@ emis_week_Y = 20140102 + 20000
setenv N_EMIS_GR 15
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_ag_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_001 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/ag/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_ag_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_001 AG_2D
setenv GR_EM_SYM_DATE_001 F
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_airports_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_002 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/airports/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_airports_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_002 AIRPORTS_2D
setenv GR_EM_SYM_DATE_002 T
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_nonpt_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_003 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/nonpt/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_nonpt_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_003 NONPT_2D
setenv GR_EM_SYM_DATE_003 T
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_nonroad_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_004 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/nonroad/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_nonroad_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_004 NONROAD_2D
setenv GR_EM_SYM_DATE_004 T
set EMISfile = m3tshift_to_20140105_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_np_oilgas_20160105_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_005 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/np_oilgas/m3tshift_to_20140105_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_np_oilgas_20160105_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_005 NP_OILGAS_2D
setenv GR_EM_SYM_DATE_005 T
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_onroad_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_006 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/onroad/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_onroad_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_006 ONROAD_2D
setenv GR_EM_SYM_DATE_006 F
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_onroad_ca_adj_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_007 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/onroad_ca_adj/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_onroad_ca_adj_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_007 ONROAD_CA_ADJ_2D
setenv GR_EM_SYM_DATE_007 F
set EMISfile = m3tshift_to_20140109_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_onroad_can_20160109_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_008 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/onroad_can/m3tshift_to_20140109_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_onroad_can_20160109_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_008 ONROAD_CAN_2D
setenv GR_EM_SYM_DATE_008 T
set EMISfile = m3tshift_to_20140109_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_onroad_mex_20160109_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_009 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/onroad_mex/m3tshift_to_20140109_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_onroad_mex_20160109_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_009 ONROAD_MEX_2D
setenv GR_EM_SYM_DATE_009 T
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_othafdust_adj_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_010 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/othafdust_adj/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_othafdust_adj_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_010 OTHAFDUST_ADJ_2D
setenv GR_EM_SYM_DATE_010 F
set EMISfile = m3tshift_to_20140109_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_othar_20160109_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_011 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/othar/m3tshift_to_20140109_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_othar_20160109_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_011 OTHAR_2D
setenv GR_EM_SYM_DATE_011 T
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_othptdust_adj_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_012 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/othptdust_adj/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_othptdust_adj_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_012 OTHPTDUST_ADJ_2D
setenv GR_EM_SYM_DATE_012 F
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_ptnonipm_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_013 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/ptnonipm/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_ptnonipm_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_013 PTNONIPM_2D
setenv GR_EM_SYM_DATE_013 T
set EMISfile = m3tshift_to_20140105_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_rail_20160105_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_014 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/rail/m3tshift_to_20140105_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_rail_20160105_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_014 RAIL_2D
setenv GR_EM_SYM_DATE_014 T
set EMISfile = m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_rwc_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_015 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/2d_emis/rwc/m3tshift_to_20140102_on_18may2020_m3wndw_to_12US2_on_18may2020_emis_mole_rwc_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv GR_EMIS_LAB_015 RWC_2D
setenv GR_EM_SYM_DATE_015 F
setenv N_EMIS_PT 9
set STKCASEE = 12US1_cmaq_cb6_2016fh_16j
set STKCASEG = 12US1_2016fh_16j
setenv STK_GRPS_001 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptnonipm/m3tshift_to_20140101_stack_groups_ptnonipm_12US1_2016fh_16j.ncf
setenv STK_GRPS_002 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptegu/m3tshift_to_20140101_stack_groups_ptegu_12US1_2016fh_16j.ncf
setenv STK_GRPS_003 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/othpt/m3tshift_to_20140101_stack_groups_othpt_12US1_2016fh_16j.ncf
setenv STK_GRPS_004 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptagfire/m3tshift_to_20140102_on_18may2020_stack_groups_ptagfire_20160102_12US1_2016fh_16j.ncf
setenv STK_GRPS_005 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptfire/m3tshift_to_20140102_on_18may2020_stack_groups_ptfire_20160102_12US1_2016fh_16j.ncf
setenv STK_GRPS_006 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptfire_othna/m3tshift_to_20140102_on_18may2020_stack_groups_ptfire_othna_20160102_12US1_2016fh_16j.ncf
setenv STK_GRPS_007 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/pt_oilgas/m3tshift_to_20140101_stack_groups_pt_oilgas_12US1_2016fh_16j.ncf
setenv STK_GRPS_008 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/cmv_c3_12/m3tshift_to_20140101_stack_groups_cmv_c3_12_12US1_2016fh_16j.ncf
setenv STK_GRPS_009 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/cmv_c1c2_12/m3tshift_to_20140101_stack_groups_cmv_c1c2_12_12US1_2016fh_16j.ncf
setenv LAYP_STTIME 030000
setenv LAYP_NSTEPS 240000
setenv STK_EMIS_001 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptnonipm/m3tshift_to_20140102_on_18may2020_inln_mole_ptnonipm_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv STK_EMIS_002 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptegu/m3tshift_to_20140102_on_18may2020_inln_mole_ptegu_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv STK_EMIS_003 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/othpt/m3tshift_to_20140109_on_18may2020_inln_mole_othpt_20160109_12US1_cmaq_cb6_2016fh_16j.ncf
setenv STK_EMIS_004 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptagfire/m3tshift_to_20140102_on_18may2020_inln_mole_ptagfire_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv STK_EMIS_005 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptfire/m3tshift_to_20140102_on_18may2020_inln_mole_ptfire_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv STK_EMIS_006 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/ptfire_othna/m3tshift_to_20140102_on_18may2020_inln_mole_ptfire_othna_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv STK_EMIS_007 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/pt_oilgas/m3tshift_to_20140102_on_18may2020_inln_mole_pt_oilgas_20160102_12US1_cmaq_cb6_2016fh_16j.ncf
setenv STK_EMIS_008 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/cmv_c3_12/m3tshift_to_20140105_on_18may2020_inln_mole_cmv_c3_12_20160105_12US1_cmaq_cb6_2016fh_16j.ncf
setenv STK_EMIS_009 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/emis/inln_emis/cmv_c1c2_12/m3tshift_to_20140105_on_18may2020_inln_mole_cmv_c1c2_12_20160105_12US1_cmaq_cb6_2016fh_16j.ncf
setenv LAYP_STDATE 2014002
setenv STK_EMIS_LAB_001 PT_NONEGU
setenv STK_EMIS_LAB_002 PT_EGU
setenv STK_EMIS_LAB_003 PT_OTHER
setenv STK_EMIS_LAB_004 PT_AGFIRES
setenv STK_EMIS_LAB_005 PT_FIRES
setenv STK_EMIS_LAB_006 PT_OTHFIRES
setenv STK_EMIS_LAB_007 PT_OILGAS
setenv STK_EMIS_LAB_008 PT_CMV_C3
setenv STK_EMIS_LAB_009 PT_CMV_C1C2
setenv STK_EM_SYM_DATE_001 T
setenv STK_EM_SYM_DATE_002 F
setenv STK_EM_SYM_DATE_003 T
setenv STK_EM_SYM_DATE_004 F
setenv STK_EM_SYM_DATE_005 F
setenv STK_EM_SYM_DATE_006 F
setenv STK_EM_SYM_DATE_007 T
setenv STK_EM_SYM_DATE_008 T
setenv STK_EM_SYM_DATE_009 T
if ( Y == Y ) then
setenv LTNGNO InLine
setenv USE_NLDN N
if ( N == Y ) then
setenv LTNGPARMS_FILE /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/lightning/m3wndw_to_12US2_LTNG_AllParms_12US1.ncf
endif
if ( Y == Y ) then
set IN_BEISpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface
setenv GSPRO /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/gspro_biogenics.txt
setenv B3GRD /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/m3wndw_to_12US2_b3grd.smoke30_beis361.12US1.2011NLCD_FIA5.1_CDL_norm_v3.ncf
setenv BIOSW_YN Y
setenv BIOSEASON /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/m3tshift_to_2014_bioseason.cmaq.2016j_12US2.ncf_full
setenv SUMMER_YN Y
setenv PX_VERSION N
setenv SOILINP /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_SOILOUT_v531_intel_2016_CONUS_20140101.nc
endif
if ( Y == Y ) then
setenv DUST_LU_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/m3wndw_to_12US2_beld3_12US1_459X299_output_a.ncf
setenv DUST_LU_2 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/m3wndw_to_12US2_beld4_12US1_459X299_output_tot.ncf
endif
setenv OCEAN_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/m3wndw_to_12US2_from_12US1_surf.ncf
if ( Y == Y ) then
setenv E2C_SOIL /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/toCMAQ_festc1.4_epic/m3wndw_to_12US2_on_20may2020_us1_2016_cmaq12km_soil.nc
setenv E2C_CHEM /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/toCMAQ_festc1.4_epic/m3tshift_to_20140102_on_20may2020_m3wndw_to_12US2_on_20may2020_us1_2016_cmaq12km_time20160102.nc
setenv E2C_LU /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/surface/m3wndw_to_12US2_beld4_camq12km_2011_4CMAQioapi.ncf
endif
setenv CTM_PROCAN N
if ( 1 ) then
if ( N == Y || N == T ) then
endif
set STKCASEG = 12US1_2016fh_16j
setenv CTM_ISAM N
if ( 1 ) then
if ( N == Y || N == T ) then
endif
setenv STM_SO4TRACK Y
if ( 1 ) then
if ( Y == Y || Y == T ) then
setenv STM_ADJSO4 Y
endif
endif
setenv S_CGRID /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_CGRID_v531_intel_2016_CONUS_20140102.nc
setenv CTM_CONC_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_CONC_v531_intel_2016_CONUS_20140102.nc -v
setenv A_CONC_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_ACONC_v531_intel_2016_CONUS_20140102.nc -v
setenv MEDIA_CONC /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_MEDIA_CONC_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_DRY_DEP_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DRYDEP_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_DEPV_DIAG /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPV_v531_intel_2016_CONUS_20140102.nc -v
setenv B3GTS_S /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_B3GTS_S_v531_intel_2016_CONUS_20140102.nc -v
setenv SOILOUT /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_SOILOUT_v531_intel_2016_CONUS_20140102.nc
setenv CTM_WET_DEP_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_WETDEP1_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_WET_DEP_2 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_WETDEP2_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_PMDIAG_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PMDIAG_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_APMDIAG_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_APMDIAG_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_RJ_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG1_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_RJ_2 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG2_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_RJ_3 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG3_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_SSEMIS_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_SSEMIS_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_DUST_EMIS_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DUSTEMIS_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_IPR_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_1_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_IPR_2 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_2_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_IPR_3 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_3_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_IRR_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_1_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_IRR_2 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_2_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_IRR_3 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_3_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_DRY_DEP_MOS /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DDMOS_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_DRY_DEP_FST /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DDFST_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_DEPV_MOS /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPVMOS_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_DEPV_FST /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPVFST_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_VDIFF_DIAG /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VDIFF_DIAG_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_VSED_DIAG /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VSED_DIAG_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_LTNGDIAG_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_LTNGHRLY_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_LTNGDIAG_2 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_LTNGCOL_v531_intel_2016_CONUS_20140102.nc -v
setenv CTM_VEXT_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VEXT_v531_intel_2016_CONUS_20140102.nc -v
setenv FLOOR_FILE /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/FLOOR_v531_intel_2016_CONUS_20140102.txt
set log_test = `cat buff.txt`
cat buff.txt
rm -f buff.txt
set OUT_FILES = ( /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/FLOOR_v531_intel_2016_CONUS_20140102.txt /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_CGRID_v531_intel_2016_CONUS_20140102.nc /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_CONC_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_ACONC_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_MEDIA_CONC_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DRYDEP_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPV_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_B3GTS_S_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_SOILOUT_v531_intel_2016_CONUS_20140102.nc /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_WETDEP1_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_WETDEP2_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PMDIAG_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_APMDIAG_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG1_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG2_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG3_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_SSEMIS_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DUSTEMIS_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_1_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_2_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_3_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_1_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_2_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_3_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DDMOS_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DDFST_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPVMOS_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPVFST_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VDIFF_DIAG_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VSED_DIAG_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_LTNGHRLY_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_LTNGCOL_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VEXT_v531_intel_2016_CONUS_20140102.nc -v )
if ( 1 ) then
if ( N == Y || N == T ) then
endif
set OUT_FILES = `echo $OUT_FILES | sed "s; -v;;g" `
sed s; -v;;g
echo /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/FLOOR_v531_intel_2016_CONUS_20140102.txt /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_CGRID_v531_intel_2016_CONUS_20140102.nc /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_CONC_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_ACONC_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_MEDIA_CONC_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DRYDEP_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPV_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_B3GTS_S_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_SOILOUT_v531_intel_2016_CONUS_20140102.nc /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_WETDEP1_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_WETDEP2_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PMDIAG_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_APMDIAG_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG1_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG2_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PHOTDIAG3_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_SSEMIS_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DUSTEMIS_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_1_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_2_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_PA_3_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_1_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_2_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_IRR_3_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DDMOS_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DDFST_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPVMOS_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_DEPVFST_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VDIFF_DIAG_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VSED_DIAG_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_LTNGHRLY_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_LTNGCOL_v531_intel_2016_CONUS_20140102.nc -v /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_VEXT_v531_intel_2016_CONUS_20140102.nc -v
set out_test = `cat buff.txt`
cat buff.txt
rm -f buff.txt
if ( TRUE == true || TRUE == TRUE ) then
echo
echo Existing Logs and Output Files for Day 2014-01-02 Will Be Deleted
foreach file ( )
foreach file ( )
/bin/rm: No match.
else
setenv CTM_STDATE 2014002
setenv CTM_STTIME 030000
setenv CTM_RUNLEN 240000
setenv CTM_TSTEP 010000
setenv INIT_CONC_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/icbc/m3tshift_to_03hrs_on_18may2020_ic.12km.2014H1.01.cmaq.cb6r3_ae7.2014002.lst.hr0.ncf.15may2020
setenv BNDY_CONC_1 /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/icbc/m3tshift_to_03hrs_on_18may2020_bc.12km.2014H1.01.cmaq.cb6r3_ae7.2014002.lst.ncf.15may2020
setenv OMI /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/OMI_1979_to_2017.dat
setenv OPTICS_DATA /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/PHOT_OPTICS.dat
set TR_DVpath = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met
set TR_DVfile = /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_in/met/d02_2014H1_01_15may2020/METCRO2D_d02_2014H1_01_15may2020.nc
setenv gc_matrix_nml /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/GC_cb6r3_ae7_aq.nml
setenv ae_matrix_nml /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/AE_cb6r3_ae7_aq.nml
setenv nr_matrix_nml /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/NR_cb6r3_ae7_aq.nml
setenv tr_matrix_nml /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/Species_Table_TR_0.nml
setenv CSQY_DATA /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/CSQY_DATA_cb6r3_ae7_aq
if ( ! ( -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/CSQY_DATA_cb6r3_ae7_aq ) ) then
if ( ! ( -e /home1/05774/tg850734/work/cmaq_libs_4mar2020/cmaq5.3.1_4mar2020/CMAQ_Project_myfix_22may2020/CCTM/scripts/BLD_CCTM_v531_intel/PHOT_OPTICS.dat ) ) then
if ( 0 != 0 ) then
echo
echo CMAQ Processing of Day 20140102 Began at `date`
date
echo
tee buff_CMAQ_CCTMv531_tg850734_20200522_191722_337778124.txt
set rtarray =  `tail -3 buff_CMAQ_CCTMv531_tg850734_20200522_191722_337778124.txt | grep -Eo '[+-]?[0-9]+([.][0-9]+)?' | head -1` 
tail -3 buff_CMAQ_CCTMv531_tg850734_20200522_191722_337778124.txt
head -1
grep -Eo [+-]?[0-9]+([.][0-9]+)?
rm -rf buff_CMAQ_CCTMv531_tg850734_20200522_191722_337778124.txt
if ( ! -e /home1/05774/tg850734/scratch/cmaq_run_18may2020/cmaq_out/CCTM_CGRID_v531_intel_2016_CONUS_20140102.nc ) then
echo 
echo **************************************************************
echo ** Runscript Detected an Error: CGRID file was not written. **
echo **   This indicates that CMAQ was interrupted or an issue   **
echo **   exists with writing output. The runscript will now     **
echo **   abort rather than proceeding to subsequent days.       **
echo **************************************************************
break
set RTMTOT = 0
foreach it ( `seq ${NDAYS}` )
seq 1
set rt = `echo ${rtarray} | cut -d' ' -f${it}`
cut -d  -f1
echo 20.34
set RTMTOT = `echo "${RTMTOT} + ${rt}" | bc -l`
bc -l
echo 0 + 20.34
end
set RTMAVG = `echo "scale=2; ${RTMTOT} / ${NDAYS}" | bc -l`
bc -l
echo scale=2; 20.34 / 1
set RTMTOT = `echo "scale=2; ${RTMTOT} / 1" | bc -l`
bc -l
echo scale=2; 20.34 / 1
echo
echo ==================================
echo   ***** CMAQ TIMING REPORT *****
echo ==================================
echo Start Day: 2014-01-02
echo End Day:   2014-01-08
echo Number of Simulation Days: 1
echo Domain Name:               12US2
echo Number of Grid Cells:      3312144  (ROW x COL x LAY)
echo Number of Layers:          34
echo Number of Processes:       48
echo    All times are in seconds.
echo
echo Num  Day        Wall Time
set d = 0
set day = 2014-01-02
foreach it ( `seq ${NDAYS}` )
seq 1
set d = `echo "${d} + 1"  | bc -l`
bc -l
echo 0 + 1
set n = `printf "%02d" ${d}`
printf %02d 1
set rt = `echo ${rtarray} | cut -d' ' -f${it}`
cut -d  -f1
echo 20.34
echo 01   2014-01-02   20.34
set day = `date -ud "${day}+1days" +%Y-%m-%d`
date -ud 2014-01-02+1days +%Y-%m-%d
end
echo      Total Time = 20.34
echo       Avg. Time = 20.34
exit