echo Start Model Run At `date` date Start Model Run At Tue Nov 10 07:01:37 UTC 2020 setenv CTM_DIAG_LVL 0 if ( ! 0 ) then setenv compiler gcc endif if ( ! 0 ) then setenv compilerVrsn Empty endif cd ../.. source ./config_cmaq.csh gcc Empty setenv CMAQ_HOME /root/cmaq/5.3.2 setenv CMAQ_REPO /root/cmaq/5.3.2 setenv CMAQ_DATA /root/cmaq/5.3.2/data if ( ! -d /root/cmaq/5.3.2/data ) mkdir -p /root/cmaq/5.3.2/data cd /root/cmaq/5.3.2 if ( 2 == 1 ) then if ( 2 == 2 ) then setenv compiler gcc setenv compilerVrsn Empty else if ( 2 == 0 ) then echo Compiler is set to gcc Compiler is set to gcc switch ( gcc ) setenv IOAPI_INCL_DIR /root/cmaq/ioapi/3.2/ioapi/fixed_src setenv IOAPI_LIB_DIR /root/cmaq/ioapi/3.2/Linux2_x86_64gfort setenv NETCDF_LIB_DIR /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/lib setenv NETCDF_INCL_DIR /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/include setenv NETCDFF_LIB_DIR /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/lib setenv NETCDFF_INCL_DIR /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/include setenv MPI_LIB_DIR /opt/apps/gcc_4.8.5/Packages/mpich/3.2.1 setenv myFC mpif90 setenv myCC gcc setenv myFSTD -O3 -funroll-loops -finit-character=32 -Wtabs -Wsurprising -march=native -ftree-vectorize -ftree-loop-if-convert -finline-limit=512 setenv myDBG -Wall -O0 -g -fcheck=all -ffpe-trap=invalid,zero,overflow -fbacktrace setenv myFFLAGS -ffixed-form -ffixed-line-length-132 -funroll-loops -finit-character=32 setenv myFRFLAGS -ffree-form -ffree-line-length-none -funroll-loops -finit-character=32 setenv myCFLAGS -O2 setenv myLINK_FLAG -fopenmp setenv extra_lib setenv mpi_lib breaksw setenv compilerString gcc if ( Empty != Empty ) then setenv netcdf_lib -lnetcdf setenv netcdff_lib -lnetcdff setenv ioapi_lib -lioapi setenv pnetcdf_lib -lpnetcdf setenv system `uname -m` uname -m setenv bld_os `uname -s``uname -r | cut -d. -f1` uname -s cut -d. -f1 uname -r setenv lib_basedir /root/cmaq/5.3.2/lib setenv CMAQ_LIB /root/cmaq/5.3.2/lib/x86_64/gcc setenv MPI_DIR /root/cmaq/5.3.2/lib/x86_64/gcc/mpi setenv NETCDF_DIR /root/cmaq/5.3.2/lib/x86_64/gcc/netcdf setenv NETCDFF_DIR /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff setenv PNETCDF_DIR /root/cmaq/5.3.2/lib/x86_64/gcc/pnetcdf setenv IOAPI_DIR /root/cmaq/5.3.2/lib/x86_64/gcc/ioapi if ( ! -d /root/cmaq/5.3.2/lib/x86_64/gcc ) mkdir -p /root/cmaq/5.3.2/lib/x86_64/gcc if ( -e /root/cmaq/5.3.2/lib/x86_64/gcc/mpi ) rm -rf /root/cmaq/5.3.2/lib/x86_64/gcc/mpi rm -rf /root/cmaq/5.3.2/lib/x86_64/gcc/mpi ln -s /opt/apps/gcc_4.8.5/Packages/mpich/3.2.1 /root/cmaq/5.3.2/lib/x86_64/gcc/mpi if ( ! -d /root/cmaq/5.3.2/lib/x86_64/gcc/netcdf ) mkdir /root/cmaq/5.3.2/lib/x86_64/gcc/netcdf if ( ! -e /root/cmaq/5.3.2/lib/x86_64/gcc/netcdf/lib ) ln -sfn /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/lib /root/cmaq/5.3.2/lib/x86_64/gcc/netcdf/lib if ( ! -e /root/cmaq/5.3.2/lib/x86_64/gcc/netcdf/include ) ln -sfn /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/include /root/cmaq/5.3.2/lib/x86_64/gcc/netcdf/include if ( ! -d /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff ) mkdir /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff if ( ! -e /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff/lib ) ln -sfn /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/lib /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff/lib if ( ! -e /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff/include ) ln -sfn /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/include /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff/includ ln -sfn /opt/apps/gcc_4.8.5/Packages/netcdf/4.7.2/include /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff/includ if ( ! -d /root/cmaq/5.3.2/lib/x86_64/gcc/ioapi ) then if ( ! -e /root/cmaq/5.3.2/lib/x86_64/gcc/netcdf/lib/libnetcdf.a ) then if ( ! -e /root/cmaq/5.3.2/lib/x86_64/gcc/netcdff/lib/libnetcdff.a ) then if ( ! -e /root/cmaq/5.3.2/lib/x86_64/gcc/ioapi/lib/libioapi.a ) then if ( ! -e /root/cmaq/5.3.2/lib/x86_64/gcc/ioapi/lib/m3utilio.mod ) then setenv EXEC_ID Linux4_x86_64gcc cd CCTM/scripts set VRSN = v532 set PROC = mpi set MECH = cb6r3_ae7_aq set EMIS = em set APPL = ty setenv RUNID TY_27km set BLD = /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc set EXEC = CCTM_v532.exe if ( 0 != 0 ) set echo setenv WORKDIR /root/cmaq/5.3.2/CCTM/scripts setenv OUTDIR /root/cmaq/5.3.2/data/output_TY_27km setenv INPDIR /root/cmaq/5.3.2/data setenv LOGDIR /root/cmaq/5.3.2/data/output_TY_27km/LOGS setenv NMLpath /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc echo echo Working Directory is /root/cmaq/5.3.2/CCTM/scripts Working Directory is /root/cmaq/5.3.2/CCTM/scripts echo Build Directory is /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc Build Directory is /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc echo Output Directory is /root/cmaq/5.3.2/data/output_TY_27km Output Directory is /root/cmaq/5.3.2/data/output_TY_27km echo Log Directory is /root/cmaq/5.3.2/data/output_TY_27km/LOGS Log Directory is /root/cmaq/5.3.2/data/output_TY_27km/LOGS echo Executable Name is CCTM_v532.exe Executable Name is CCTM_v532.exe setenv NEW_START TRUE set START_DATE = `/usr/bin/date +%Y%m%d -ud "$datetime_start"` /usr/bin/date +%Y%m%d -ud 2020-09-21 06:00:00 set END_DATE = `/usr/bin/date +%Y%m%d -ud "$datetime_start +3 days"` /usr/bin/date +%Y%m%d -ud 2020-09-21 06:00:00 +3 days set STTIME = 120000 set NSTEPS = 240000 set TSTEP = 010000 if ( mpi == serial ) then @ NPCOL = 9 @ NPROW = 5 @ NPROCS = 9 * 5 setenv NPCOL_NPROW 9 5 endif setenv EXECUTION_ID CMAQ_CCTMv532_`id -u -n`_`date -u +%Y%m%d_%H%M%S_%N` id -u -n date -u +%Y%m%d_%H%M%S_%N echo echo ---CMAQ EXECUTION ID: CMAQ_CCTMv532_root_20201110_070137_169311716 --- ---CMAQ EXECUTION ID: CMAQ_CCTMv532_root_20201110_070137_169311716 --- set CLOBBER_DATA = FALSE if ( ! -e /root/cmaq/5.3.2/data/output_TY_27km/LOGS ) then mkdir -p /root/cmaq/5.3.2/data/output_TY_27km/LOGS endif setenv PRINT_PROC_TIME Y setenv STDOUT T setenv GRID_NAME TY_27km setenv GRIDDESC /root/cmaq/5.3.2/data/mcip/GRIDDESC set NZ = 35 set NX = `grep -A 1 ${GRID_NAME} ${GRIDDESC} | tail -1 | sed 's/ */ /g' | cut -d' ' -f6` grep -A 1 TY_27km /root/cmaq/5.3.2/data/mcip/GRIDDESC tail -1 cut -d -f6 sed s/ */ /g set NY = `grep -A 1 ${GRID_NAME} ${GRIDDESC} | tail -1 | sed 's/ */ /g' | cut -d' ' -f7` grep -A 1 TY_27km /root/cmaq/5.3.2/data/mcip/GRIDDESC tail -1 cut -d -f7 sed s/ */ /g set NCELLS = `echo "${NX} * ${NY} * ${NZ}" | bc -l` bc -l echo 181 * 148 * 35 bc: Command not found. setenv ACONC_BLEV_ELEV 1 1 setenv AVG_FILE_ENDTIME N set time_sync_max = ( 300 200 100 ) set time_sync_min = ( 60 40 20 ) setenv CTM_MAXSYNC 300 setenv CTM_MINSYNC 60 setenv SIGMA_SYNC_TOP 0.7 setenv CTM_ADV_CFL 0.95 setenv CTM_OCEAN_CHEM N setenv CTM_WB_DUST N setenv CTM_WBDUST_BELD BELD3 setenv CTM_LTNG_NO N setenv KZMIN Y setenv CTM_MOSAIC N setenv CTM_FST N setenv PX_VERSION N setenv CLM_VERSION N setenv NOAH_VERSION Y setenv CTM_ABFLUX N setenv CTM_BIDI_FERT_NH3 N setenv CTM_HGBIDI N setenv CTM_SFC_HONO N setenv CTM_GRAV_SETL Y setenv CTM_BIOGEMIS N setenv VERTEXT N setenv VERTEXT_COORD_PATH /root/cmaq/5.3.2/CCTM/scripts/lonlat.csv setenv IOAPI_LOG_WRITE F setenv FL_ERR_STOP N setenv PROMPTFLAG F setenv IOAPI_OFFSET_64 YES setenv IOAPI_CHECK_HEADERS N setenv CTM_EMISCHK N setenv EMISDIAG N setenv EMISDIAG_SUM F setenv CTM_CKSUM N setenv CLD_DIAG N setenv CTM_PHOTDIAG N setenv NLAYS_PHOTDIAG 1 setenv CTM_PMDIAG N setenv CTM_APMDIAG N setenv APMDIAG_BLEV_ELEV 1 1 setenv CTM_SSEMDIAG N setenv CTM_DUSTEM_DIAG N setenv CTM_DEPV_FILE N setenv VDIFF_DIAG_FILE N setenv LTNGDIAG N setenv B3GTS_DIAG N setenv CTM_WVEL N set ICpath = /root/cmaq/5.3.2/data/icon set BCpath = /root/cmaq/5.3.2/data/bcon set EMISpath = /root/cmaq/5.3.2/data/emis/gridded set IN_PTpath = /root/cmaq/5.3.2/data/emis/point set IN_LTpath = /root/cmaq/5.3.2/data/met/lightning set METpath = /root/cmaq/5.3.2/data/mcip/ set OMIpath = /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc set LUpath = /root/cmaq/5.3.2/data/surface set SZpath = /root/cmaq/5.3.2/data/oceanfile set rtarray = set TODAYG = 20200921 set TODAYJ = `date -ud "${START_DATE}" +%Y%j` date -ud 20200921 +%Y%j set START_DAY = 2020265 set STOP_DAY = `date -ud "${END_DATE}" +%Y%j` date -ud 20200922 +%Y%j set NDAYS = 0 set flag_YYYYMMDD = `date -ud "${TODAYG}" +%Y%m%d` date -ud 20200921 +%Y%m%d while ( 2020265 < = 2020266 ) set NDAYS = `echo "${NDAYS} + 1" | bc -l` bc -l echo 0 + 1 bc: Command not found. set YYYYMMDD = `date -ud "${TODAYG}" +%Y%m%d` date -ud 20200921 +%Y%m%d set YYYYMM = `date -ud "${TODAYG}" +%Y%m` date -ud 20200921 +%Y%m set YYYY = `date -ud "${TODAYG}" +%Y` date -ud 20200921 +%Y set YYMMDD = `date -ud "${TODAYG}" +%y%m%d` date -ud 20200921 +%y%m%d set YYYYJJJ = 2020265 set YESTERDAY = `date -ud "${TODAYG}-1days" +%Y%m%d` date -ud 20200921-1days +%Y%m%d echo echo Set up input and output files for Day 20200921. Set up input and output files for Day 20200921. setenv CTM_APPL TY_27km_20200921 mkdir -p /root/cmaq/5.3.2/data/output_TY_27km/20200921 cp /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/CCTM_v532.cfg /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_TY_27km_20200921.cfg if ( TRUE == true || TRUE == TRUE ) then setenv ICFILE ICON_v532_TY_27km_regrid_20200921 setenv INIT_MEDC_1 notused setenv INITIAL_RUN Y else set BCFILE = BCON_v532_TY_27km_regrid_20200921 set OMIfile = OMI_1979_to_2019.dat set OPTfile = PHOT_OPTICS.dat setenv GRID_BDY_2D /root/cmaq/5.3.2/data/mcip//TY_27km/GRIDBDY2D_20200921.nc setenv GRID_CRO_2D /root/cmaq/5.3.2/data/mcip//TY_27km/GRIDCRO2D_20200921.nc setenv GRID_CRO_3D /root/cmaq/5.3.2/data/mcip//TY_27km/GRIDCRO3D_20200921.nc setenv GRID_DOT_2D /root/cmaq/5.3.2/data/mcip//TY_27km/GRIDDOT2D_20200921.nc setenv MET_CRO_2D /root/cmaq/5.3.2/data/mcip//TY_27km/METCRO2D_20200921.nc setenv MET_CRO_3D /root/cmaq/5.3.2/data/mcip//TY_27km/METCRO3D_20200921.nc setenv MET_DOT_3D /root/cmaq/5.3.2/data/mcip//TY_27km/METDOT3D_20200921.nc setenv MET_BDY_3D /root/cmaq/5.3.2/data/mcip//TY_27km/METBDY3D_20200921.nc setenv LUFRAC_CRO /root/cmaq/5.3.2/data/mcip//TY_27km/LUFRAC_CRO_20200921.nc setenv EMISSCTRL_NML /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/EmissCtrl_cb6r3_ae7_aq.nml setenv CMAQ_MASKS /root/cmaq/5.3.2/data/oceanfile/ocean_file.dummy.TY_27km.ncf setenv N_EMIS_GR 1 set EMISfile = CMAQ_v5.3.2_TY_27km_20200921.nc setenv GR_EMIS_001 /root/cmaq/5.3.2/data/emis/gridded/CMAQ_v5.3.2_TY_27km_20200921.nc setenv GR_EMIS_LAB_001 GRIDDED_EMIS setenv GR_EM_SYM_DATE_001 F if ( N == Y ) then if ( N == Y ) then if ( N == Y ) then setenv OCEAN_1 /root/cmaq/5.3.2/data/oceanfile/ocean_file.dummy.TY_09km.ncf if ( N == Y ) then setenv CTM_PROCAN N if ( 1 ) then if ( N == Y || N == T ) then endif setenv CTM_ISAM N if ( 1 ) then if ( N == Y || N == T ) then endif setenv STM_SO4TRACK N if ( 1 ) then if ( N == Y || N == T ) then endif setenv CTM_DDM3D N set NPMAX = 1 setenv SEN_INPUT /root/cmaq/5.3.2/CCTM/scripts/sensinput.dat setenv DDM3D_HIGH N if ( TRUE == true || TRUE == TRUE ) then setenv DDM3D_RST N set S_ICpath = set S_ICfile = else setenv DDM3D_BCS F set S_BCpath = set S_BCfile = setenv CTM_NPMAX 1 setenv CTM_SENS_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SENGRID_TY_27km_20200921.nc -v setenv A_SENS_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_ASENS_TY_27km_20200921.nc -v setenv CTM_SWETDEP_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SENWDEP_TY_27km_20200921.nc -v setenv CTM_SDRYDEP_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SENDDEP_TY_27km_20200921.nc -v setenv CTM_NPMAX 1 setenv INIT_SENS_1 / setenv BNDY_SENS_1 / setenv S_CGRID /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_CGRID_TY_27km_20200921.nc setenv CTM_CONC_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_CONC_TY_27km_20200921.nc -v setenv A_CONC_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_ACONC_TY_27km_20200921.nc -v setenv MEDIA_CONC /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_MEDIA_CONC_TY_27km_20200921.nc -v setenv CTM_DRY_DEP_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DRYDEP_TY_27km_20200921.nc -v setenv CTM_DEPV_DIAG /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPV_TY_27km_20200921.nc -v setenv B3GTS_S /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_B3GTS_S_TY_27km_20200921.nc -v setenv SOILOUT /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SOILOUT_TY_27km_20200921.nc setenv CTM_WET_DEP_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_WETDEP1_TY_27km_20200921.nc -v setenv CTM_WET_DEP_2 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_WETDEP2_TY_27km_20200921.nc -v setenv CTM_PMDIAG_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PMDIAG_TY_27km_20200921.nc -v setenv CTM_APMDIAG_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_APMDIAG_TY_27km_20200921.nc -v setenv CTM_RJ_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG1_TY_27km_20200921.nc -v setenv CTM_RJ_2 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG2_TY_27km_20200921.nc -v setenv CTM_RJ_3 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG3_TY_27km_20200921.nc -v setenv CTM_SSEMIS_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SSEMIS_TY_27km_20200921.nc -v setenv CTM_DUST_EMIS_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DUSTEMIS_TY_27km_20200921.nc -v setenv CTM_IPR_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_1_TY_27km_20200921.nc -v setenv CTM_IPR_2 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_2_TY_27km_20200921.nc -v setenv CTM_IPR_3 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_3_TY_27km_20200921.nc -v setenv CTM_IRR_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_1_TY_27km_20200921.nc -v setenv CTM_IRR_2 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_2_TY_27km_20200921.nc -v setenv CTM_IRR_3 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_3_TY_27km_20200921.nc -v setenv CTM_DRY_DEP_MOS /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DDMOS_TY_27km_20200921.nc -v setenv CTM_DRY_DEP_FST /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DDFST_TY_27km_20200921.nc -v setenv CTM_DEPV_MOS /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPVMOS_TY_27km_20200921.nc -v setenv CTM_DEPV_FST /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPVFST_TY_27km_20200921.nc -v setenv CTM_VDIFF_DIAG /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VDIFF_DIAG_TY_27km_20200921.nc -v setenv CTM_VSED_DIAG /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VSED_DIAG_TY_27km_20200921.nc -v setenv CTM_LTNGDIAG_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_LTNGHRLY_TY_27km_20200921.nc -v setenv CTM_LTNGDIAG_2 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_LTNGCOL_TY_27km_20200921.nc -v setenv CTM_VEXT_1 /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VEXT_TY_27km_20200921.nc -v setenv FLOOR_FILE /root/cmaq/5.3.2/data/output_TY_27km/FLOOR_TY_27km_20200921.txt set log_test = `cat buff.txt` cat buff.txt rm -f buff.txt set OUT_FILES = ( /root/cmaq/5.3.2/data/output_TY_27km/FLOOR_TY_27km_20200921.txt /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_CGRID_TY_27km_20200921.nc /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_CONC_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_ACONC_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_MEDIA_CONC_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DRYDEP_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPV_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_B3GTS_S_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SOILOUT_TY_27km_20200921.nc /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_WETDEP1_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_WETDEP2_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PMDIAG_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_APMDIAG_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG1_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG2_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG3_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SSEMIS_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DUSTEMIS_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_1_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_2_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_3_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_1_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_2_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_3_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DDMOS_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DDFST_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPVMOS_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPVFST_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VDIFF_DIAG_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VSED_DIAG_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_LTNGHRLY_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_LTNGCOL_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VEXT_TY_27km_20200921.nc -v ) if ( 1 ) then if ( N == Y || N == T ) then endif if ( 1 ) then if ( N == Y || N == T ) then endif set OUT_FILES = `echo $OUT_FILES | sed "s; -v;;g" ` sed s; -v;;g echo /root/cmaq/5.3.2/data/output_TY_27km/FLOOR_TY_27km_20200921.txt /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_CGRID_TY_27km_20200921.nc /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_CONC_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_ACONC_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_MEDIA_CONC_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DRYDEP_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPV_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_B3GTS_S_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SOILOUT_TY_27km_20200921.nc /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_WETDEP1_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_WETDEP2_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PMDIAG_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_APMDIAG_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG1_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG2_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PHOTDIAG3_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_SSEMIS_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DUSTEMIS_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_1_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_2_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_PA_3_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_1_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_2_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_IRR_3_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DDMOS_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DDFST_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPVMOS_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_DEPVFST_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VDIFF_DIAG_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VSED_DIAG_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_LTNGHRLY_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_LTNGCOL_TY_27km_20200921.nc -v /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_VEXT_TY_27km_20200921.nc -v set out_test = `cat buff.txt` cat buff.txt rm -f buff.txt if ( FALSE == true || FALSE == TRUE ) then if ( != ) then if ( != ) then endif setenv CTM_STDATE 2020265 setenv CTM_STTIME 120000 setenv CTM_RUNLEN 240000 setenv CTM_TSTEP 010000 setenv INIT_CONC_1 /root/cmaq/5.3.2/data/icon/TY_27km/ICON_v532_TY_27km_regrid_20200921 setenv BNDY_CONC_1 /root/cmaq/5.3.2/data/bcon/TY_27km/BCON_v532_TY_27km_regrid_20200921 setenv OMI /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/OMI_1979_to_2019.dat setenv OPTICS_DATA /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/PHOT_OPTICS.dat setenv gc_matrix_nml /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/GC_cb6r3_ae7_aq.nml setenv ae_matrix_nml /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/AE_cb6r3_ae7_aq.nml setenv nr_matrix_nml /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/NR_cb6r3_ae7_aq.nml setenv tr_matrix_nml /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/Species_Table_TR_0.nml setenv CSQY_DATA /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/CSQY_DATA_cb6r3_ae7_aq if ( ! ( -e /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/CSQY_DATA_cb6r3_ae7_aq ) ) then if ( ! ( -e /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/PHOT_OPTICS.dat ) ) then if ( 0 != 0 ) then echo echo CMAQ Processing of Day 20200921 Began at `date` date CMAQ Processing of Day 20200921 Began at Tue Nov 10 07:01:37 UTC 2020 echo tee buff_CMAQ_CCTMv532_root_20201110_070137_169311716.txt /usr/bin/time -p mpirun -np 45 /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/CCTM_v532.exe CTM_APPL | TY_27km_20200921 ================================================================================ | | | The Community Multiscale Air Quality (CMAQ) Model | | Version 5.3.2 | | | | Built and Maintained by the | | Office of Research and Development | | United States Environmental Protection Agency | | | | https://www.epa.gov/cmaq | | | | Source Code: https://www.github.com/USEPA/cmaq/tree/master | | Documentation: https://www.github.com/USEPA/cmaq/tree/master/DOCS | | | | The CMAQ Model is tested and released with cooperation from | | the Community Modeling and Analysis System (CMAS) Center via | | contract support. CMAS is managed by the Institute for the | | Environment, University of North Carolina at Chapel Hill. | | CMAS URL: (https://www.cmascenter.org) | | | ================================================================================ This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 I/O Applications Programming Interface, [I/O API] which is built on top of the netCDF I/O library (Copyright 1993, 1996 University Corporation for Atmospheric Research/Unidata Program) and the PVM parallel-programming library (from Oak Ridge National Laboratory). Copyright (C) 1992-2002 MCNC, (C) 1992-2018 Carlie J. Coats, Jr., (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and (C) 2014-2020 UNC Institute for the Environment. Released under the GNU LGPL License, version 2.1. See URL https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html for conditions of use. ioapi-3.2: $Id: init3.F90 150 2020-04-11 17:51:44Z coats $ netCDF version 4.7.2 of Sep 16 2020 07:17:26 $ =========================================== |>--- ENVIRONMENT VARIABLE REPORT ---<| =========================================== |> Grid and High-Level Model Parameters: +========================================= --Env Variable-- | --Value-- -------------------------------------------------------------------------------- BLD | (default) OUTDIR | /root/cmaq/5.3.2/data/output_TY_27km NEW_START | T ISAM_NEW_START | Y (default) GRID_NAME | TY_27km CTM_TSTEP | 10000 CTM_RUNLEN | 240000 CTM_PROGNAME | DRIVER (default) CTM_STDATE | 2020265 CTM_STTIME | 120000 NPCOL_NPROW | 9 5 CTM_MAXSYNC | 300 CTM_MINSYNC | 60 |> Multiprocess control, output and error checking: +==================================================== --Env Variable-- | --Value-- -------------------------------------------------------------------------------- PRINT_PROC_TIME | T FL_ERR_STOP | F CTM_CKSUM | F AVG_FILE_ENDTIME | F AVG_CONC_SPCS | (default) CONC_SPCS | (default) ACONC_BLEV_ELEV | 1 1 CONC_BLEV_ELEV | (default) IOAPI_LOG_WRITE | F VERTEXT | F VERTEXT_COORD_PA | /root/cmaq/5.3.2/CCTM/scripts/lonlat.csv gc_matrix_nml | /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/GC_cb6r3_ae7_aq.nml ae_matrix_nml | /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/AE_cb6r3_ae7_aq.nml nr_matrix_nml | /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/NR_cb6r3_ae7_aq.nml tr_matrix_nml | /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/Species_Table_TR_0.nml |> Chemistry and Photolysis: +============================= --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CTM_PHOTDIAG | F CORE_SHELL_OPTIC | F (default) OPTICS_MIE_CALC | F (default) GEAR_ATOL | 0.100E-08 (default) GEAR_RTOL | 0.100E-02 (default) RB_RTOL | 0.100E-02 (default) RB_ATOL | 0.100E-06 (default) |> Aerosols: +============= --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CTM_AVISDIAG | F (default) CTM_ZERO_PCSOA | F (default) CTM_AOD | F (default) CTM_PMDIAG | F CTM_APMDIAG | F APMDIAG_BLEV_ELE | 1 1 AVG_PMDIAG_SPCS | (default) STM_SO4TRACK | F |> Cloud Processes: +==================== --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CLD_DIAG | F |> Air-Surface Exchange Processes: +=================================== --Env Variable-- | --Value-- -------------------------------------------------------------------------------- PX_VERSION | F CTM_ABFLUX | F CTM_MOSAIC | F CTM_SFC_HONO | F CLM_VERSION | F NOAH_VERSION | T CTM_STAGE | F (default) CTM_DEPV_FILE | F CTM_HGBIDI | F CTM_BIDI_FERT_NH | F CTM_WBDUST_BELD | BELD3 |> Transport Processes: +======================== --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CTM_VDIFF_DIAG_F | F (default) SIGMA_SYNC_TOP | 0.700E+00 ADV_HDIV_LIM | 0.900E+00 (default) CTM_ADV_CFL | 0.950E+00 KZMIN | T CTM_WVEL | F CTM_GRAV_SETL | T |> Emissions Parameters: +========================= --Env Variable-- | --Value-- -------------------------------------------------------------------------------- EMISSCTRL_NML | /root/cmaq/5.3.2/CCTM/scripts/BLD_CCTM_v532_gcc/EmissCtrl_cb6r3_ae7_aq.nml CTM_EMLAYS | 0 (default) N_EMIS_GR | 1 N_EMIS_TR | 0 (default) CTM_EMISCHK | F CTM_BIOGEMIS | F BIOG_SPRO | DEFAULT (default) BIOSW_YN | F (default) SUMMER_YN | T (default) B3GTS_DIAG | F CTM_MGEMDIAG | F (default) CTM_OCEAN_CHEM | F CTM_WB_DUST | F CTM_DUSTEM_DIAG | F CTM_SSEMDIAG | F CTM_LTNG_NO | F LTNG_ASSIM_DT | 0 (default) LTNGNO | InLine (default) USE_NLDN | F (default) LTNGDIAG | F MOLSNCG | 0.350E+03 (default) MOLSNIC | 0.350E+03 (default) N_EMIS_PT | 0 (default) IPVERT | 0 (default) EMISDIAG | N EMIS_SYM_DATE | F (default) |> Process Analysis Parameters: +================================ --Env Variable-- | --Value-- -------------------------------------------------------------------------------- CTM_PROCAN | F PA_BCOL_ECOL | (default) PA_BROW_EROW | (default) PA_BLEV_ELEV | (default) MET_TSTEP | 10000 (default) MET data determined based on WRF ARW version 4.1.1 -=- MPP Processor-to-Subdomain Map -=- Number of Processors = 45 ____________________________________________________ | | | PE #Cols Col_Range #Rows Row_Range | |__________________________________________________| | | | 0 21 1: 21 30 1: 30 | | 1 20 22: 41 30 1: 30 | | 2 20 42: 61 30 1: 30 | | 3 20 62: 81 30 1: 30 | | 4 20 82: 101 30 1: 30 | | 5 20 102: 121 30 1: 30 | | 6 20 122: 141 30 1: 30 | | 7 20 142: 161 30 1: 30 | | 8 20 162: 181 30 1: 30 | | 9 21 1: 21 30 31: 60 | | 10 20 22: 41 30 31: 60 | | 11 20 42: 61 30 31: 60 | | 12 20 62: 81 30 31: 60 | | 13 20 82: 101 30 31: 60 | | 14 20 102: 121 30 31: 60 | | 15 20 122: 141 30 31: 60 | | 16 20 142: 161 30 31: 60 | | 17 20 162: 181 30 31: 60 | | 18 21 1: 21 30 61: 90 | | 19 20 22: 41 30 61: 90 | | 20 20 42: 61 30 61: 90 | | 21 20 62: 81 30 61: 90 | | 22 20 82: 101 30 61: 90 | | 23 20 102: 121 30 61: 90 | | 24 20 122: 141 30 61: 90 | | 25 20 142: 161 30 61: 90 | | 26 20 162: 181 30 61: 90 | | 27 21 1: 21 29 91: 119 | | 28 20 22: 41 29 91: 119 | | 29 20 42: 61 29 91: 119 | | 30 20 62: 81 29 91: 119 | | 31 20 82: 101 29 91: 119 | | 32 20 102: 121 29 91: 119 | | 33 20 122: 141 29 91: 119 | | 34 20 142: 161 29 91: 119 | | 35 20 162: 181 29 91: 119 | | 36 21 1: 21 29 120: 148 | | 37 20 22: 41 29 120: 148 | | 38 20 42: 61 29 120: 148 | | 39 20 62: 81 29 120: 148 | | 40 20 82: 101 29 120: 148 | | 41 20 102: 121 29 120: 148 | | 42 20 122: 141 29 120: 148 | | 43 20 142: 161 29 120: 148 | | 44 20 162: 181 29 120: 148 | |__________________________________________________| ================================ |>--- TIME INTEGRATION ---<| ================================ Processing Day/Time [YYYYDDD:HHMMSS]: 2020265:120000 Which is Equivalent to (UTC): 12:00:00 Monday, Sept. 21, 2020 Time-Step Length (HHMMSS): 000500 VDIFF completed... 1.0 seconds COUPLE completed... 0.0 seconds Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: Program received signal SIGBUS: Access to an undefined portion of a memory object. Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: Backtrace for this error: Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: #0 Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: 0x2AC601405697 #1 0x2AC601405CDE #2 0x2AC6022DA3FF Program received signal SIGBUS: Access to an undefined portion of a memory object. #3 0x2AC6023FA42A #4 0x2AC6010CB5E4 #5 0x2AC6010BAF8B #6 0x2AC6010C2807 #7 0x2AC60102FB11 #8 0x2AC600D5F9D7 Backtrace for this error: #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x6920BC in y_ppm_ #11 0x67F124 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: #0 0x2B1351011697 #1 0x2B1351011CDE #2 0x2B1351EE63FF #3 0x2B135200642A #4 0x2B1350CD75E4 #5 0x2B1350CC6F8B #6 0x2B1350CCE807 #7 0x2B1350C3BB11 #8 0x2B135096B9D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x68DFA1 in x_ppm_ #11 0x67F101 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #0 0x2B97A011D697 #14 0x654175 in MAIN__ at cmaq_main.F:? #1 0x2B97A011DCDE #2 0x2B97A0FF23FF #3 0x2B97A111242A #4 0x2B979FDE35E4 #5 0x2B979FDD2F8B #6 0x2B979FDDA807 #7 0x2B979FD47B11 #8 0x2B979FA779D7 Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: Program received signal SIGBUS: Access to an undefined portion of a memory object. Backtrace for this error: #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x68DFA1 in x_ppm_ #11 0x67F101 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? #0 0x2B3EB9404697 #1 0x2B3EB9404CDE #2 0x2B3EBA2D93FF #3 0x2B3EBA3F942A #4 0x2B3EB90CA5E4 #5 0x2B3EB90B9F8B #6 0x2B3EB90C1807 #7 0x2B3EB902EB11 #8 0x2B3EB8D5E9D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x6920BC in y_ppm_ #11 0x67F124 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #0 0x2B43310BA697 #1 0x2B43310BACDE #2 0x2B4331F8F3FF #14 0x654175 in MAIN__ at cmaq_main.F:? #3 0x2B43320AF42A #4 0x2B4330D805E4 #5 0x2B4330D6FF8B #6 0x2B4330D77807 #7 0x2B4330CE4B11 #8 0x2B4330A149D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x6920BC in y_ppm_ #11 0x67F124 in hadv_ #0 0x2B4A7EDC8697 #1 0x2B4A7EDC8CDE #12 0x661672 in sciproc_ #2 0x2B4A7FC9D3FF #3 0x2B4A7FDBD42A #4 0x2B4A7EA8E5E4 #13 0x65531D in cmaq_driver_ #5 0x2B4A7EA7DF8B #6 0x2B4A7EA85807 #7 0x2B4A7E9F2B11 #8 0x2B4A7E7229D7 #14 0x654175 in MAIN__ at cmaq_main.F:? #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x6920BC in y_ppm_ #11 0x67F124 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? #0 0x2B2AFC2C8697 #1 0x2B2AFC2C8CDE #2 0x2B2AFD19D3FF #3 0x2B2AFD2BD42A #4 0x2B2AFBF8E5E4 #5 0x2B2AFBF7DF8B #6 0x2B2AFBF85807 #7 0x2B2AFBEF2B11 #8 0x2B2AFBC229D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x6920BC in y_ppm_ #11 0x67F124 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? #0 0x2AE9F66C5697 #1 0x2AE9F66C5CDE #2 0x2AE9F759A3FF #3 0x2AE9F76BA42A #4 0x2AE9F638B5E4 #5 0x2AE9F637AF8B #6 0x2AE9F6382807 #7 0x2AE9F62EFB11 #8 0x2AE9F601F9D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x68DFA1 in x_ppm_ #11 0x67F101 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #0 0x2B714BD9B697 #1 0x2B714BD9BCDE #2 0x2B714CC703FF #3 0x2B714CD9042A #4 0x2B714BA615E4 #5 0x2B714BA50F8B #6 0x2B714BA58807 #7 0x2B714B9C5B11 #8 0x2B714B6F59D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x68DFA1 in x_ppm_ #11 0x67F101 in hadv_ #0 0x2BAA0E1FC697 #1 0x2BAA0E1FCCDE #2 0x2BAA0F0D13FF #12 0x661672 in sciproc_ #3 0x2BAA0F1F142A #4 0x2BAA0DEC25E4 #5 0x2BAA0DEB1F8B #6 0x2BAA0DEB9807 #7 0x2BAA0DE26B11 #13 0x65531D in cmaq_driver_ #8 0x2BAA0DB569D7 #14 0x654175 in MAIN__ at cmaq_main.F:? #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x68DFA1 in x_ppm_ #11 0x67F101 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? #14 0x654175 in MAIN__ at cmaq_main.F:? #0 0x2AC780543697 #0 0x2B8638AC0697 #1 0x2B8638AC0CDE #2 0x2B86399953FF #3 0x2B8639AB542A #4 0x2B86387865E4 #5 0x2B8638775F8B #6 0x2B863877D807 #7 0x2B86386EAB11 #8 0x2B863841A9D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x6920BC in y_ppm_ #11 0x67F124 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? #0 0x2B1855E36697 #1 0x2B1855E36CDE #2 0x2B1856D0B3FF #3 0x2B1856E2B42A #4 0x2B1855AFC5E4 #5 0x2B1855AEBF8B #6 0x2B1855AF3807 #7 0x2B1855A60B11 #8 0x2B18557909D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x6920BC in y_ppm_ #11 0x67F124 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? #1 0x2AC780543CDE #2 0x2AC7814183FF #3 0x2AC78153842A #4 0x2AC7802095E4 #5 0x2AC7801F8F8B #6 0x2AC780200807 #7 0x2AC78016DB11 #8 0x2AC77FE9D9D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x6920BC in y_ppm_ #11 0x67F124 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? #0 0x2AB589D8C697 #1 0x2AB589D8CCDE #2 0x2AB58AC613FF #3 0x2AB58AD8142A #4 0x2AB589A525E4 #5 0x2AB589A41F8B #6 0x2AB589A49807 #7 0x2AB5899B6B11 #8 0x2AB5896E69D7 #9 0x422338 in __se_comm_module_MOD_se_pe_comm3s #10 0x68DFA1 in x_ppm_ #11 0x67F101 in hadv_ #12 0x661672 in sciproc_ #13 0x65531D in cmaq_driver_ #14 0x654175 in MAIN__ at cmaq_main.F:? =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 35218 RUNNING AT 4362f67304b2 = EXIT CODE: 135 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Bus error (signal 7) This typically refers to a problem with your application. Please see the FAQ page for debugging suggestions real 7.80 user 294.74 sys 47.05 set rtarray = `tail -3 buff_CMAQ_CCTMv532_root_20201110_070137_169311716.txt | grep -Eo '[+-]?[0-9]+([.][0-9]+)?' | head -1` tail -3 buff_CMAQ_CCTMv532_root_20201110_070137_169311716.txt head -1 grep -Eo [+-]?[0-9]+([.][0-9]+)? rm -rf buff_CMAQ_CCTMv532_root_20201110_070137_169311716.txt if ( ! -e /root/cmaq/5.3.2/data/output_TY_27km/20200921/CCTM_CGRID_TY_27km_20200921.nc ) then echo echo ************************************************************** ************************************************************** echo ** Runscript Detected an Error: CGRID file was not written. ** ** Runscript Detected an Error: CGRID file was not written. ** echo ** This indicates that CMAQ was interrupted or an issue ** ** This indicates that CMAQ was interrupted or an issue ** echo ** exists with writing output. The runscript will now ** ** exists with writing output. The runscript will now ** echo ** abort rather than proceeding to subsequent days. ** ** abort rather than proceeding to subsequent days. ** echo ************************************************************** ************************************************************** break set RTMTOT = 0 foreach it ( `seq ${NDAYS}` ) seq seq: missing operand Try 'seq --help' for more information. set RTMAVG = `echo "scale=2; ${RTMTOT} / ${NDAYS}" | bc -l` bc -l echo scale=2; 0 / bc: Command not found. set RTMTOT = `echo "scale=2; ${RTMTOT} / 1" | bc -l` bc -l echo scale=2; 0 / 1 bc: Command not found. echo echo ================================== ================================== echo ***** CMAQ TIMING REPORT ***** ***** CMAQ TIMING REPORT ***** echo ================================== ================================== echo Start Day: 20200921 Start Day: 20200921 echo End Day: 20200922 End Day: 20200922 echo Number of Simulation Days: Number of Simulation Days: echo Domain Name: TY_27km Domain Name: TY_27km echo Number of Grid Cells: (ROW x COL x LAY) Number of Grid Cells: (ROW x COL x LAY) echo Number of Layers: 35 Number of Layers: 35 echo Number of Processes: 45 Number of Processes: 45 echo All times are in seconds. All times are in seconds. echo echo Num Day Wall Time Num Day Wall Time set d = 0 set day = 20200921 foreach it ( `seq ${NDAYS}` ) seq seq: missing operand Try 'seq --help' for more information. echo Total Time = Total Time = echo Avg. Time = Avg. Time = exit