Hi,
I’m new to biogenic emission modeling, and I’m trying to use the gfortran compiler to build and run the MEGANv3.2 model. I got an error when running “make_all_programs.scr”. I don’t know how to set the flag options of the Makefiles (under DAYMET, IOAPI2UAM, MEGCAN, MEGSEA, MEGVEA, MET2MGN, MGN2MECH, TXT2IOAPI) in accordance with the gfortran compiler. Could anyone help me to set the suitable flag options for the Makefiles?
Thank you for any help in advance.
Reza
A good resource is the I/O API Makefile tand Makeinclude.Linux2_x86_64gfort (or Makeinclude.Linux2_x86_64dbg for debug/traceback/check-everything).
Dear Carlie,
Thank you for your reply. I couldn’t find Makefile or Makeinclude files under the I/O API. Is there any other solution to the issue?
???
ioapi-3.2#24 ls -l ioapi/Mak\*
-rw-r--r-- 1 coats coats 15901 Jan 31 17:04 ioapi/Makefile
-rw-r--r-- 1 coats coats 16401 Jan 31 17:04 ioapi/Makefile.cpl
-rw-r--r-- 1 coats coats 15897 Jan 31 17:04 ioapi/Makefile.cpl.sed
-rw-r--r-- 1 coats coats 15835 Jan 31 17:04 ioapi/Makefile.cpphack
-rw-r--r-- 1 coats coats 16366 Jan 31 17:04 ioapi/Makefile.nocpl
-rw-r--r-- 1 coats coats 15864 Jan 31 17:04 ioapi/Makefile.nocpl.sed
-rw-r--r-- 1 coats coats 15866 Jan 31 17:04 ioapi/Makefile.pncf
-rw-r--r-- 1 coats coats 15822 Jan 31 17:04 ioapi/Makefile.pncf.sed
-rw-r--r-- 1 coats coats 636 Dec 12 2019 ioapi/Makeinclude.AIX
-rw-r--r-- 1 coats coats 687 Dec 12 2019 ioapi/Makeinclude.AIX_
-rw-r--r-- 1 coats coats 604 Dec 12 2019 ioapi/Makeinclude.AIXdbg
-rw-r--r-- 1 coats coats 637 Mar 26 2020 ioapi/Makeinclude.Darwin_x86_64ifort
-rw-r--r-- 1 coats coats 528 Dec 12 2019 ioapi/Makeinclude.HPUX
-rw-r--r-- 1 coats coats 638 Dec 12 2019 ioapi/Makeinclude.IRIX5
-rw-r--r-- 1 coats coats 889 Dec 12 2019 ioapi/Makeinclude.IRIX64
-rw-r--r-- 1 coats coats 840 Dec 12 2019 ioapi/Makeinclude.IRIX64dbg
-rw-r--r-- 1 coats coats 829 Dec 12 2019 ioapi/Makeinclude.IRIX64r8
-rw-r--r-- 1 coats coats 900 Dec 12 2019 ioapi/Makeinclude.IRIX6n32
-rw-r--r-- 1 coats coats 1014 Dec 12 2019 ioapi/Makeinclude.IRIX6n32dbg
-rw-r--r-- 1 coats coats 876 Dec 12 2019 ioapi/Makeinclude.IRIX6n32r8
-rw-r--r-- 1 coats coats 615 Dec 12 2019 ioapi/Makeinclude.Linux2_alpha
-rw-r--r-- 1 coats coats 642 Dec 12 2019 ioapi/Makeinclude.Linux2_alphadbg
-rw-r--r-- 1 coats coats 678 Dec 12 2019 ioapi/Makeinclude.Linux2_ia64
-rw-r--r-- 1 coats coats 521 Dec 12 2019 ioapi/Makeinclude.Linux2_ia64_mp
-rw-r--r-- 1 coats coats 614 Dec 12 2019 ioapi/Makeinclude.Linux2_ia64_nomp
-rw-r--r-- 1 coats coats 633 Dec 12 2019 ioapi/Makeinclude.Linux2_ia64dbg
-rw-r--r-- 1 coats coats 618 Dec 12 2019 ioapi/Makeinclude.Linux2_ia64g95
-rwxr-xr-x 1 coats coats 615 Dec 12 2019 ioapi/Makeinclude.Linux2_ia64gcc
-rw-r--r-- 1 coats coats 1162 Dec 12 2019 ioapi/Makeinclude.Linux2_ia64gfort
-rw-r--r-- 1 coats coats 900 Dec 12 2019 ioapi/Makeinclude.Linux2_ia64ifort
-rw-r--r-- 1 coats coats 873 Mar 26 2020 ioapi/Makeinclude.Linux2_ia64ifortdbg
-rw-r--r-- 1 coats coats 1345 Oct 3 2020 ioapi/Makeinclude.Linux2_x86
-rw-r--r-- 1 coats coats 1330 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64
-rw-r--r-- 1 coats coats 1400 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64_360
-rw-r--r-- 1 coats coats 1425 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64_365
-rw-r--r-- 1 coats coats 636 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64af95
-rw-r--r-- 1 coats coats 981 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64af95_
-rw-r--r-- 1 coats coats 966 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64af95_dbg
-rw-r--r-- 1 coats coats 620 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64af95dbg
-rw-r--r-- 1 coats coats 1213 Jun 21 2020 ioapi/Makeinclude.Linux2_x86_64aocc
-rw-r--r-- 1 coats coats 1176 Jan 31 17:04 ioapi/Makeinclude.Linux2_x86_64dbg
-rw-r--r-- 1 coats coats 695 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64g95
-rw-r--r-- 1 coats coats 713 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64g95dbg
-rw-r--r-- 1 coats coats 1527 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfort
-rw-r--r-- 1 coats coats 1452 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfort10
-rw-r--r-- 1 coats coats 1810 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfort10_medium
-rw-r--r-- 1 coats coats 1488 Jan 31 17:04 ioapi/Makeinclude.Linux2_x86_64gfort10_mediumdbg
-rw-r--r-- 1 coats coats 1465 Jan 31 17:04 ioapi/Makeinclude.Linux2_x86_64gfort10dbg
-rw-r--r-- 1 coats coats 1514 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfort10mpi
-rw-r--r-- 1 coats coats 1534 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfort_360
-rw-r--r-- 1 coats coats 1534 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfort_365
-rw-r--r-- 1 coats coats 1885 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfort_medium
-rw-r--r-- 1 coats coats 1565 Jan 31 17:04 ioapi/Makeinclude.Linux2_x86_64gfort_mediumdbg
-rw-r--r-- 1 coats coats 1738 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfortdbg
-rw-r--r-- 1 coats coats 1264 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfortdbg.mine
-r--r--r-- 1 coats coats 1252 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfortdbg.r147
-r--r--r-- 1 coats coats 1530 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfortdbg.r188
-rw-r--r-- 1 coats coats 1589 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64gfortmpi
-rw-r--r-- 1 coats coats 1493 Mar 26 2020 ioapi/Makeinclude.Linux2_x86_64ifort
-rw-r--r-- 1 coats coats 1264 Mar 26 2020 ioapi/Makeinclude.Linux2_x86_64ifort_360
-rw-r--r-- 1 coats coats 1343 Mar 26 2020 ioapi/Makeinclude.Linux2_x86_64ifort_365
-rw-r--r-- 1 coats coats 1673 Mar 26 2020 ioapi/Makeinclude.Linux2_x86_64ifort_medium
-rw-r--r-- 1 coats coats 1603 Mar 26 2020 ioapi/Makeinclude.Linux2_x86_64ifort_mediumdbg
-rw-r--r-- 1 coats coats 1436 Mar 26 2020 ioapi/Makeinclude.Linux2_x86_64ifortdbg
-rw-r--r-- 1 coats coats 1431 Mar 26 2020 ioapi/Makeinclude.Linux2_x86_64ifortmpi
-rw-r--r-- 1 coats coats 1466 Mar 26 2020 ioapi/Makeinclude.Linux2_x86_64ifortmpidbg
-rw-r--r-- 1 coats coats 978 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64path
-rw-r--r-- 1 coats coats 976 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64pathdbg
-rw-r--r-- 1 coats coats 2038 Oct 3 2020 ioapi/Makeinclude.Linux2_x86_64pg
-rw-r--r-- 1 coats coats 2133 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64pg_360
-rw-r--r-- 1 coats coats 2124 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64pg_365
-rw-r--r-- 1 coats coats 2199 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64pg_gcc_nomp
-rw-r--r-- 1 coats coats 2239 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64pg_medium
-rw-r--r-- 1 coats coats 2053 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64pg_pgcc_nomp
-rw-r--r-- 1 coats coats 2072 Feb 19 2021 ioapi/Makeinclude.Linux2_x86_64pgdbg
-rw-r--r-- 1 coats coats 2198 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64pgmpi
-rw-r--r-- 1 coats coats 796 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64sun
-rw-r--r-- 1 coats coats 790 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64sundbg
-rw-r--r-- 1 coats coats 959 Dec 12 2019 ioapi/Makeinclude.Linux2_x86_64sunmpi
-rw-r--r-- 1 coats coats 574 Dec 12 2019 ioapi/Makeinclude.Linux2_x86af95
-rw-r--r-- 1 coats coats 900 Dec 12 2019 ioapi/Makeinclude.Linux2_x86af95_
-rw-r--r-- 1 coats coats 892 Dec 12 2019 ioapi/Makeinclude.Linux2_x86af95_dbg
-rw-r--r-- 1 coats coats 566 Dec 12 2019 ioapi/Makeinclude.Linux2_x86af95dbg
-rw-r--r-- 1 coats coats 1298 Oct 3 2020 ioapi/Makeinclude.Linux2_x86dbg
-rw-r--r-- 1 coats coats 721 Dec 12 2019 ioapi/Makeinclude.Linux2_x86g95
-rw-r--r-- 1 coats coats 735 Dec 12 2019 ioapi/Makeinclude.Linux2_x86g95dbg
-rw-r--r-- 1 coats coats 577 Dec 12 2019 ioapi/Makeinclude.Linux2_x86lf95
-rw-r--r-- 1 coats coats 983 Dec 12 2019 ioapi/Makeinclude.Linux2_x86path
-rw-r--r-- 1 coats coats 1938 Dec 12 2019 ioapi/Makeinclude.Linux2_x86pg
-rw-r--r-- 1 coats coats 2057 Dec 12 2019 ioapi/Makeinclude.Linux2_x86pg_gcc_mp
-rw-r--r-- 1 coats coats 2059 Dec 12 2019 ioapi/Makeinclude.Linux2_x86pg_gcc_nomp
-rw-r--r-- 1 coats coats 1947 Dec 12 2019 ioapi/Makeinclude.Linux2_x86pg_pgcc_mp
-rw-r--r-- 1 coats coats 1883 Dec 12 2019 ioapi/Makeinclude.Linux2_x86pg_pgcc_nomp
-rw-r--r-- 1 coats coats 679 Dec 12 2019 ioapi/Makeinclude.Linux2_x86sun
-rw-r--r-- 1 coats coats 733 Dec 12 2019 ioapi/Makeinclude.Linux2_x86sundbg
-rw-r--r-- 1 coats coats 657 Dec 12 2019 ioapi/Makeinclude.OSF1
-rw-r--r-- 1 coats coats 881 Dec 12 2019 ioapi/Makeinclude.OSX_x86
-rw-r--r-- 1 coats coats 815 Dec 12 2019 ioapi/Makeinclude.OSX_x86_64ifort
-rw-r--r-- 1 coats coats 1182 Dec 12 2019 ioapi/Makeinclude.OSX_x86_gfortran
-rw-r--r-- 1 coats coats 631 Dec 12 2019 ioapi/Makeinclude.SunOS5
-rw-r--r-- 1 coats coats 655 Dec 12 2019 ioapi/Makeinclude.SunOS5dbg
-rw-r--r-- 1 coats coats 1497 Dec 12 2019 ioapi/Makeinclude.WIN_x86_64gfort
-rw-r--r-- 1 coats coats 1513 Dec 12 2019 ioapi/Makeinclude.WIN_x86_64gfort_medium
-rw-r--r-- 1 coats coats 1603 Dec 12 2019 ioapi/Makeinclude.WIN_x86_64mingw64
-rw-r--r-- 1 coats coats 1527 Dec 12 2019 ioapi/Makeinclude.WIN_x86gfort
-rw-r--r-- 1 coats coats 589 Dec 12 2019 ioapi/Makeinclude.cray
IOAPI directory ??? This is not an I/O API 3.1 install !!
The directory structure of the install has:
ioapi-3.1
HTML/
Linux2_x86_64ifort/ [etc…]
ioapi/
iotests/
m3tools/
notcdf/
The directory is different from the structure that you shared. But, I have used it in my WRF/CMAQ runs.
Where the ??? did it come from ???
Carlie J. Coats, Jr., Ph.D.
I/O API Author/Maintainer
I used this command to download the IOAPI from (probably your) Github account:
git clone https://github.com/cjcoats/ioapi-3.2
Judging by what you said above
I have installed IOAPI version 3.1. The IOAPI directory includes:
your git clone …ioapi-3.2 was not followed by an actual installation. I give up with you.
Dear Reza,
I was facing the same problem and this thread has helped me solve it: MEGAN 3.2 Error While Running and Compiling
It’s pretty much the same as what Dr. Coats has mentioned here.
Anyhow, I can create google drive folder containing the makefiles adjusted to gfortran in 24hours and post the link here. If you still need them, let me know.
@amirdudu
Hi dear Amir,
Thank you for your help. I will be pleased if you share the Makefiles with me. Moreover, I couldn’t find any guide for MEGANv3.2. Could you please inform me if is there any guide for version 3.2?
Thank you in advance.
Best regards,
Reza
Dear Reza,
Here is the google drive link for gfortran Makefiles: Makefiles_MEGAN3.2 - Google Drive
These flags worked for me and I hope that they do for you too.
Since MEGAN3.1 and 3.2 work almost in the same way, you can use the MEGAN3.1 user guide which is also included in the link above.
Bests
Amir
Just for the avoidance of any doubt, it’s important to remember that MEGAN and its preprocessors are not developed or supported by CMAS or the USEPA but instead are developed and maintained by the Biosphere Atmosphere Interactions Group at the University of California, Irvine. The only connection to CMAS-supported software is the apparent use of I/O API by some of the MEGAN code.
To our knowledge, the MEGAN developers are not active on this forum. As stated in its description, the purpose of the MEGAN tag on this forum is to be a “category for those who would like to collaborate on solving issues regarding MEGAN.”. In that sense, it’s great to see @amirdudu and @f.garcia share their experiences regarding the use of MEGAN. However, I would not expect any of the changes to the MEGAN code or build instructions discussed in the other thread linked by @amirdudu to be implemented in the MEGAN code released by the developers unless some community members reach out to the MEGAN developers to make this happen and/or the MEGAN developers become active on this forum and respond to issues directly.
@amirdudu
Dear Amir,
Despite my efforts to find the gfortran equivalent of the flag options, I was unable to do so for some of them. My issue was resolved by these files. I greatly appreciate your assistance.
Best regards,
Reza
