I encountered such a problem while running run_cctm.csh, and I haven’t been able to resolve it.
This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
I/O Applications Programming Interface, [I/O API] which is
built on top of the netCDF I/O library (Copyright 1993, 1996
University Corporation for Atmospheric Research/Unidata
Program) and the PVM parallel-programming library (from
Oak Ridge National Laboratory).
Copyright (C) 1992-2002 MCNC,
(C) 1992-2018 Carlie J. Coats, Jr.,
(C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and
(C) 2014-2021 UNC Institute for the Environment.
Released under the GNU LGPL License, version 2.1. See URL
https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html
for conditions of use.
ioapi-3.2: $Id: init3.F90 200 2021-05-10 14:06:20Z coats $
Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048
netCDF version 4.7.4 of Sep 28 2021 07:46:29 $
EXECUTION_ID: /public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/CCTM/script
Value for GRID_NAME: 'SE52BENCH'
Value for GRID_NAME: 'SE52BENCH'
File "GRIDDESC" opened for input on unit: 99
/public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/data/SE52BENCH/single_day/cctm_input/GRIDDESC
Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE
"MET_CRO_3D" opened as OLD:READ-ONLY
File name "/public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/data/SE52BENCH/single_day/cctm_input/met/mcip/METCRO3D_110701.nc"
File type GRDDED3
Execution ID "mcip"
Grid name "METCRO_SE52BENCH"
Dimensions: 80 rows, 100 cols, 35 lays, 15 vbles
NetCDF ID: 65536 opened as READONLY
Starting date and time 2011182:000000 (0:00:00 July 1, 2011)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 25
GC Species Namelist: /public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/CCTM/scripts/BLD_CCTM_v52_gcc/GC_cb6r3_ae6_aq.nml
AE Species Namelist: /public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/CCTM/scripts/BLD_CCTM_v52_gcc/AE_cb6r3_ae6_aq.nml
NR Species Namelist: /public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/CCTM/scripts/BLD_CCTM_v52_gcc/NR_cb6r3_ae6_aq.nml
TR Species Namelist: /public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/CCTM/scripts/BLD_CCTM_v52_gcc/Species_Table_TR_0.nml
-=- MPP Processor-to-Subdomain Map -=-
____________________________________________________
| |
| PE #Cols Col_Range #Rows Row_Range |
|__________________________________________________|
| |
| 0 100 1: 100 80 1: 80 |
|__________________________________________________|
Value for CTM_PROCAN not defined;returning default: FALSE
Flag for using process analysis
Environment variable not set ... Using default: 0
PA_DATAGEN: Process Analysis is not activated
Value for CTM_WVEL not defined;returning default: FALSE
Value for CTM_TSTEP not defined; returning default: 10000
Scenario Output Time Step (HHMMSS)
Environment variable not set ... Using default: 0
Value for CTM_PROGNAME not defined; returning defaultval ': 'DRIVER'
Value for CTM_PROGNAME not defined; returning defaultval ': 'DRIVER'
Main Program Name
Environment variable not set ... Using default: 0
Value for CTM_STDATE not defined; returning default: 1995192
Scenario Starting Date (YYYYDDD)
Environment variable not set ... Using default: 0
Value for CTM_STTIME not defined; returning default: 0
Scenario Starting Time (HHMMSS)
Environment variable not set ... Using default: 0
Value for CTM_RUNLEN not defined; returning default: 480000
Scenario Run Duration (HHMMSS)
Environment variable not set ... Using default: 0
"GRID_CRO_2D" opened as OLD:READ-ONLY
File name "/public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/data/SE52BENCH/single_day/cctm_input/met/mcip/GRIDCRO2D_110701.nc"
File type GRDDED3
Execution ID "mcip"
Grid name "GRIDOUT_SE52BENC"
Dimensions: 80 rows, 100 cols, 1 lays, 47 vbles
NetCDF ID: 131072 opened as READONLY
Time-independent data.
"INIT_GASC_1" opened as OLD:READ-ONLY
File name "/public3/home/scg9350/soft/CMAQ-soft/CMAQ52/CMAQ-CMAQv5.2_30June2017/data/SE52BENCH/single_day/cctm_input/icbc/ICON_20110630_bench.nc"
File type GRDDED3
Execution ID "????????????????"
Grid name "SE52BENCH"
Dimensions: 80 rows, 100 cols, 35 lays, 227 vbles
NetCDF ID: 196608 opened as READONLY
Starting date and time 2011182:000000 (0:00:00 July 1, 2011)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 1
IC/BC Factors used for transported gas-phase species
1 NO2 1.0000
2 NO 1.0000
3 O 1.0000
4 O3 1.0000
5 NO3 1.0000
6 O1D 1.0000
7 OH 1.0000
8 HO2 1.0000
9 H2O2 1.0000
10 N2O5 1.0000
11 HNO3 1.0000
12 HONO 1.0000
13 PNA 1.0000
14 SO2 1.0000
15 SULF 1.0000
16 SULRXN 1.0000
17 C2O3 1.0000
18 MEO2 1.0000
19 RO2 1.0000
20 PAN 1.0000
21 PACD 1.0000
22 AACD 1.0000
23 CXO3 1.0000
24 ALD2 1.0000
25 XO2H 1.0000
26 PANX 1.0000
27 FORM 1.0000
28 MEPX 1.0000
29 MEOH 1.0000
30 ROOH 1.0000
31 XO2 1.0000
32 XO2N 1.0000
33 XPAR 1.0000
34 XPRP 1.0000
35 NTR1 1.0000
36 NTR2 1.0000
37 FACD 1.0000
38 CO 1.0000
39 HCO3 1.0000
40 ALDX 1.0000
41 GLYD 1.0000
42 GLY 1.0000
43 MGLY 1.0000
44 ETHA 1.0000
45 ETOH 1.0000
46 KET 1.0000
47 PAR 1.0000
48 ACET 1.0000
49 PRPA 1.0000
50 ROR 1.0000
51 ETHY 1.0000
52 ETH 1.0000
53 OLE 1.0000
54 IOLE 1.0000
55 ISOP 1.0000
56 ISO2 1.0000
57 ISOPRXN 1.0000
58 ISPD 1.0000
59 INTR 1.0000
60 ISPX 1.0000
61 HPLD 1.0000
62 OPO3 1.0000
63 EPOX 1.0000
64 EPX2 1.0000
65 TERP 1.0000
66 TRPRXN 1.0000
67 BENZENE 1.0000
68 CRES 1.0000
69 BZO2 1.0000
70 OPEN 1.0000
71 BENZRO2 1.0000
72 TOL 1.0000
73 TO2 1.0000
74 TOLRO2 1.0000
75 XOPN 1.0000
76 XYLMN 1.0000
77 XLO2 1.0000
78 XYLRO2 1.0000
79 NAPH 1.0000
80 PAHRO2 1.0000
81 CRO 1.0000
82 CAT1 1.0000
83 CRON 1.0000
84 OPAN 1.0000
85 ECH4 1.0000
86 CL2 1.0000
87 CL 1.0000
88 HOCL 1.0000
89 CLO 1.0000
90 FMCL 1.0000
91 HCL 1.0000
92 CLNO2 1.0000
93 TOLNRXN 1.0000
94 TOLHRXN 1.0000
95 XYLNRXN 1.0000
96 XYLHRXN 1.0000
97 BNZNRXN 1.0000
98 BNZHRXN 1.0000
99 SESQ 1.0000
100 SESQRXN 1.0000
101 PAHNRXN 1.0000
102 PAHHRXN 1.0000
103 SOAALK 1.0000
104 ALKRXN 1.0000
105 H2NO3PIJ 1.0000
106 H2NO3PK 1.0000
107 VLVPO1 1.0000
108 VSVPO1 1.0000
109 VSVPO2 1.0000
110 VSVPO3 1.0000
111 VIVPO1 1.0000
112 VLVOO1 1.0000
113 VLVOO2 1.0000
114 VSVOO1 1.0000
115 VSVOO2 1.0000
116 VSVOO3 1.0000
117 PCVOC 1.0000
118 PCSOARXN 1.0000
No IC found for species FORM_PRIMARY in INIT_GASC_1; set to 1.00E-30
No IC found for species ALD2_PRIMARY in INIT_GASC_1; set to 1.00E-30
No IC found for species BUTADIENE13 in INIT_GASC_1; set to 1.00E-30
No IC found for species ACROLEIN in INIT_GASC_1; set to 1.00E-30
No IC found for species ACRO_PRIMARY in INIT_GASC_1; set to 1.00E-30
No IC found for species TOLU in INIT_GASC_1; set to 1.00E-30
No IC found for species HG in INIT_GASC_1; set to 1.00E-30
No IC found for species HGIIAER in INIT_GASC_1; set to 1.00E-30
No IC found for species HGIIGAS in INIT_GASC_1; set to 1.00E-30
Requested date & time: 1995192:000000
File starting date & time: 2011182:000000
File time step: 010000
>>--->> WARNING in subroutine RDTFLAG
Time step error for file: INIT_GASC_1
M3WARN: DTBUF 0:00:00 July 11, 1995 (1995192:000000)
>>--->> WARNING in subroutine XTRACT3
Time step not available for file: INIT_GASC_1
M3WARN: DTBUF 0:00:00 July 11, 1995 (1995192:000000)
application called MPI_Abort(MPI_COMM_WORLD, 538976288) - process 0
[unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=538976288
:
system msg for write_line failure : Bad file descriptor
*** ERROR ABORT in subroutine LOAD_CGRID on PE 000
Could not read NO2 from INIT_GASC_1
Date and time 0:00:00 July 11, 1995 (1995192:000000)