Segmentation fault (core dumped) while running Spatial allocator

@dyang,

I just tried 32bits again now as you suggested (as I have tried it before now). Below is the error I got:

source /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/bin/sa_setup.csh
setenv SA_HOME /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master
setenv PROJDIR /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local
setenv PROJ_LIB /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/share/proj
setenv PROJ_LIBRARY /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib
setenv PROJ_INCLUDE /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/include
setenv LD_LIBRARY_PATH /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/hdf5/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:
setenv GDALHOME /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local
setenv GDAL_LIB /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib
setenv LD_LIBRARY_PATH /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/hdf5/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:
setenv GDALBIN /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/bin
setenv NETCDF /home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf
setenv NETCDF_LIB /home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib
setenv NETCDF_INC /home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/include
setenv LD_LIBRARY_PATH /home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/hdf5/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:
setenv HDF4 /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local
setenv HDF4_LIB /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib
setenv HDF4_INC /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/include
setenv LD_LIBRARY_PATH /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/hdf5/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:
setenv HDF5 /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf5-1.8.16/local
setenv HDF5_LIB /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf5-1.8.16/local/lib
setenv HDF5_INC /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf5-1.8.16/local/include
setenv LD_LIBRARY_PATH /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf5-1.8.16/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/hdf5/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:
setenv GEOS /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local
setenv GEOS_LIB /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/lib
setenv GEOS_INC /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/include
setenv LD_LIBRARY_PATH /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf5-1.8.16/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/geos-3.5.0/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/hdf5/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/mpich/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:/home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/lib:
alias ncdump /home/catalyst/Desktop/Build_WRF/LIBRARIES/netcdf/bin/ncdump
alias gdalinfo /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/gdal-2.0.2/local/bin/gdalinfo
alias h4dump /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf-4.2.11/local/bin/ncdump
alias h5dump /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/hdf5-1.8.16/local/bin/h5dump
alias cs2cs /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/src/libs/proj-4.9.3/local/bin/cs2cs
setenv DEBUG_OUTPUT Y
setenv SA_HOME /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master
setenv EXE /home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/bin/32bits/allocator.exe
setenv DATADIR /media/catalyst/Dimeji/Desktop/Build_WRF/LIBRARIES/meic12/combined
setenv OUTPUT /media/catalyst/Dimeji/Desktop/Build_WRF/LIBRARIES/meic12/projected/36km
setenv MIMS_PROCESSING ALLOCATE
setenv TIME time
setenv GRIDDESC /home/catalyst/Desktop/Build_WRF/LIBRARIES/process_emissions/GRIDDESC_36km
setenv INPUT_FILE_NAME /media/catalyst/Dimeji/Desktop/Build_WRF/LIBRARIES/meic12/combined/2016_01_agriculture.ncf
setenv INPUT_FILE_TYPE IoapiFile
setenv INPUT_GRID_NAME LATLON
setenv INPUT_FILE_MAP_PRJN MEIC14
setenv INPUT_FILE_ELLIPSOID +a=6370997.0,+b=6370997.0
setenv ALLOCATE_ATTRS ALL
setenv ALLOC_MODE_FILE ALL_AGGREGATE
setenv OUTPUT_FILE_NAME /media/catalyst/Dimeji/Desktop/Build_WRF/LIBRARIES/meic12/projected/36km/china_2016_meic_01_agriculture_36km.ncf
setenv OUTPUT_FILE_TYPE IoapiFile
setenv OUTPUT_FILE_MAP_PRJN LamCon_39N_116W
setenv OUTPUT_GRID_NAME 36km
setenv OUTPUT_FILE_ELLIPSOID +a=6370997.0,+b=6370997.0
/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/bin/32bits/allocator.exe
/home/catalyst/Desktop/Build_WRF/LIBRARIES/Spatial-Allocator-master/bin/32bits/allocator.exe: Command not found.
0.000u 0.000s 0:00.00 0.0% 0+0k 0+0io 0pf+0w

Command not found

Can it be because my workstation is a 64bits?

Blockquote

Dear @bbaek, @lizadams, @dyang,

I have resolved this issue.

I really appreciate your help.

Thanks and regards,

Catalyst