Icon and bcon get stuck while running for the single day benchmark

Hello lizadams,

Below is what I got while building CCTM. I need your assistance please. Thanks.

gfortran -c -ffixed-form -ffixed-line-length-132 -funroll-loops -finit-character=32 -O3 -funroll-loops -finit-character=32 -Wtabs -Wsurprising -I /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/lib/x86_64/gcc7.3.0/ioapi/modules -I /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/lib/x86_64/gcc7.3.0/ioapi/include_files -I /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/lib/x86_64/gcc7.3.0/mpi -I. pinterpb.f
STATE3.EXT:174:27:

Error: Syntax error in COMMON statement at (1)
STATE3.EXT:191:27:

Error: Syntax error in COMMON statement at (1)
Makefile:414: recipe for target ‘pinterpb.o’ failed
make: *** [pinterpb.o] Error 1
ERROR while running make command

else if ( 0 ) then
endif
mv Makefile Makefile.gcc7.3.0
mv: ‘Makefile’ and ‘Makefile.gcc7.3.0’ are the same file
if ( -e Makefile.gcc7.3.0 && -e Makefile ) rm Makefile
rm Makefile
ln -s Makefile.gcc7.3.0 Makefile
if ( 0 != 0 ) then
if ( -e /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_gcc7.3.0/CCTM_v52.cfg ) then
echo >>> previous CCTM_v52.cfg exists, re-naming to CCTM_v52.cfg.old <<<

previous CCTM_v52.cfg exists, re-naming to CCTM_v52.cfg.old <<<
mv /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_gcc7.3.0/CCTM_v52.cfg /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_gcc7.3.0/CCTM_v52.cfg.old
endif
mv CCTM_v52.cfg.bld /home/catalyst/Desktop/Build_WRF/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_gcc7.3.0/CCTM_v52.cfg
exit

I have been able to successfully compile CCTM after so many manipulations of my scripts. Thanks so much for your guide. I’m available to help those facing the challenges I have faced in the course of compiling CMAQ and its related models.

Cheers.

Catalyst

Hi Catalyst,

I’m facing problems such as the one described above. My error is here:

./bldit_bldmake.csh

Finish building bldmake_intel19.0.4.243.exe
endif
set Blder = /u/jrwelsh/CMAQ/CMAQ_REPO/UTIL/bldmake/bldmake_intel.exe -serial -verbose
cd /u/jrwelsh/CMAQ/CMAQ_REPO/PREP/bcon/scripts/BLD_BCON_v52_profile_intel
if ( 0 ) then
if ( 1 ) then
/u/jrwelsh/CMAQ/CMAQ_REPO/UTIL/bldmake/bldmake_intel.exe -serial -verbose BCO N_v52_profile.cfg.bld
/u/jrwelsh/CMAQ/CMAQ_REPO/UTIL/bldmake/bldmake_intel.exe: Command not found.
else
endif
mv Makefile Makefile.intel
mv: failed to access ‘Makefile.intel’: Too many levels of symbolic links
if ( -e Makefile.intel && -e Makefile ) rm Makefile
ln -s Makefile.intel Makefile
ln: failed to access ‘Makefile’: Too many levels of symbolic links
if ( 1 != 0 ) then
echo *** failure in /u/jrwelsh/CMAQ/CMAQ_REPO/UTIL/bldmake/bldmake_intel.e xe -serial -verbose ***
*** failure in /u/jrwelsh/CMAQ/CMAQ_REPO/UTIL/bldmake/bldmake_intel.exe -s erial -verbose ***
exit 1

Any and all help would be greatly appreciated!

Thanks!

Please remove the command to link the Makefile
You can either do this by removing the line, or add a pound sign to the beginning of the line to comment it out.
That will remove one of the errors. Try submitting your script again, and see what you get.

#if ( -e Makefile.intel && -e Makefile ) rm Makefile
#ln -s Makefile.intel Makefile

Comment out the above to get rid of the following error:
ln: failed to access ‘Makefile’: Too many levels of symbolic links

1 Like

Hi
how do you solved your problem? Could you guide me, please?
I have the same error when I compiling MCIP:

make[1]: Entering directory ‘/home/ensiyeh/WRF-CMAQ/CMAQ_REPO/PREP/mcip/src’
I/include -I/include -c const_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘const_mod.o’ failed
make[1]: [const_mod.o] Error 127 (ignored)
I/include -I/include -c const_pbl_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘const_pbl_mod.o’ failed
make[1]: [const_pbl_mod.o] Error 127 (ignored)
I/include -I/include -c coord_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘coord_mod.o’ failed
make[1]: [coord_mod.o] Error 127 (ignored)
I/include -I/include -c date_time_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘date_time_mod.o’ failed
make[1]: [date_time_mod.o] Error 127 (ignored)
I/include -I/include -c date_pack_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘date_pack_mod.o’ failed
make[1]: [date_pack_mod.o] Error 127 (ignored)
I/include -I/include -c files_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘files_mod.o’ failed
make[1]: [files_mod.o] Error 127 (ignored)
I/include -I/include -c groutcom_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘groutcom_mod.o’ failed
make[1]: [groutcom_mod.o] Error 127 (ignored)
I/include -I/include -c luvars_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘luvars_mod.o’ failed
make[1]: [luvars_mod.o] Error 127 (ignored)
I/include -I/include -c mcipparm_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mcipparm_mod.o’ failed
make[1]: [mcipparm_mod.o] Error 127 (ignored)
I/include -I/include -c mcoutcom_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mcoutcom_mod.o’ failed
make[1]: [mcoutcom_mod.o] Error 127 (ignored)
I/include -I/include -c mdoutcom_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mdoutcom_mod.o’ failed
make[1]: [mdoutcom_mod.o] Error 127 (ignored)
I/include -I/include -c metinfo_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘metinfo_mod.o’ failed
make[1]: [metinfo_mod.o] Error 127 (ignored)
I/include -I/include -c metvars_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘metvars_mod.o’ failed
make[1]: [metvars_mod.o] Error 127 (ignored)
I/include -I/include -c vgrd_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘vgrd_mod.o’ failed
make[1]: [vgrd_mod.o] Error 127 (ignored)
I/include -I/include -c wrf_netcdf_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘wrf_netcdf_mod.o’ failed
make[1]: [wrf_netcdf_mod.o] Error 127 (ignored)
I/include -I/include -c xvars_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘xvars_mod.o’ failed
make[1]: [xvars_mod.o] Error 127 (ignored)
I/include -I/include -c sat2mcip_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘sat2mcip_mod.o’ failed
make[1]: [sat2mcip_mod.o] Error 127 (ignored)
make[1]: Leaving directory ‘/home/ensiyeh/WRF-CMAQ/CMAQ_REPO/PREP/mcip/src’
make[1]: Entering directory ‘/home/ensiyeh/WRF-CMAQ/CMAQ_REPO/PREP/mcip/src’
I/include -I/include -c const_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘const_mod.o’ failed
make[1]: [const_mod.o] Error 127 (ignored)
I/include -I/include -c const_pbl_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘const_pbl_mod.o’ failed
make[1]: [const_pbl_mod.o] Error 127 (ignored)
I/include -I/include -c coord_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘coord_mod.o’ failed
make[1]: [coord_mod.o] Error 127 (ignored)
I/include -I/include -c date_time_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘date_time_mod.o’ failed
make[1]: [date_time_mod.o] Error 127 (ignored)
I/include -I/include -c date_pack_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘date_pack_mod.o’ failed
make[1]: [date_pack_mod.o] Error 127 (ignored)
I/include -I/include -c files_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘files_mod.o’ failed
make[1]: [files_mod.o] Error 127 (ignored)
I/include -I/include -c groutcom_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘groutcom_mod.o’ failed
make[1]: [groutcom_mod.o] Error 127 (ignored)
I/include -I/include -c luvars_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘luvars_mod.o’ failed
make[1]: [luvars_mod.o] Error 127 (ignored)
I/include -I/include -c mcipparm_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mcipparm_mod.o’ failed
make[1]: [mcipparm_mod.o] Error 127 (ignored)
I/include -I/include -c mcoutcom_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mcoutcom_mod.o’ failed
make[1]: [mcoutcom_mod.o] Error 127 (ignored)
I/include -I/include -c mdoutcom_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mdoutcom_mod.o’ failed
make[1]: [mdoutcom_mod.o] Error 127 (ignored)
I/include -I/include -c metinfo_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘metinfo_mod.o’ failed
make[1]: [metinfo_mod.o] Error 127 (ignored)
I/include -I/include -c metvars_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘metvars_mod.o’ failed
make[1]: [metvars_mod.o] Error 127 (ignored)
I/include -I/include -c vgrd_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘vgrd_mod.o’ failed
make[1]: [vgrd_mod.o] Error 127 (ignored)
I/include -I/include -c wrf_netcdf_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘wrf_netcdf_mod.o’ failed
make[1]: [wrf_netcdf_mod.o] Error 127 (ignored)
I/include -I/include -c xvars_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘xvars_mod.o’ failed
make[1]: [xvars_mod.o] Error 127 (ignored)
I/include -I/include -c sat2mcip_mod.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘sat2mcip_mod.o’ failed
make[1]: [sat2mcip_mod.o] Error 127 (ignored)
I/include -I/include -c mcip.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mcip.o’ failed
make[1]: [mcip.o] Error 127 (ignored)
I/include -I/include -c alloc_ctm.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘alloc_ctm.o’ failed
make[1]: [alloc_ctm.o] Error 127 (ignored)
I/include -I/include -c alloc_met.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘alloc_met.o’ failed
make[1]: [alloc_met.o] Error 127 (ignored)
I/include -I/include -c alloc_x.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘alloc_x.o’ failed
make[1]: [alloc_x.o] Error 127 (ignored)
I/include -I/include -c bcldprc_ak.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘bcldprc_ak.o’ failed
make[1]: [bcldprc_ak.o] Error 127 (ignored)
I/include -I/include -c blddesc.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘blddesc.o’ failed
make[1]: [blddesc.o] Error 127 (ignored)
I/include -I/include -c chkwpshdr.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘chkwpshdr.o’ failed
make[1]: [chkwpshdr.o] Error 127 (ignored)
I/include -I/include -c chkwrfhdr.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘chkwrfhdr.o’ failed
make[1]: [chkwrfhdr.o] Error 127 (ignored)
I/include -I/include -c close_files.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘close_files.o’ failed
make[1]: [close_files.o] Error 127 (ignored)
I/include -I/include -c collapx.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘collapx.o’ failed
make[1]: [collapx.o] Error 127 (ignored)
I/include -I/include -c comheader.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘comheader.o’ failed
make[1]: [comheader.o] Error 127 (ignored)
I/include -I/include -c cori.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘cori.o’ failed
make[1]: [cori.o] Error 127 (ignored)
I/include -I/include -c dealloc_ctm.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘dealloc_ctm.o’ failed
make[1]: [dealloc_ctm.o] Error 127 (ignored)
I/include -I/include -c dealloc_met.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘dealloc_met.o’ failed
make[1]: [dealloc_met.o] Error 127 (ignored)
I/include -I/include -c dealloc_x.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘dealloc_x.o’ failed
make[1]: [dealloc_x.o] Error 127 (ignored)
I/include -I/include -c detangle_soil_px.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘detangle_soil_px.o’ failed
make[1]: [detangle_soil_px.o] Error 127 (ignored)
I/include -I/include -c e_aerk.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘e_aerk.o’ failed
make[1]: [e_aerk.o] Error 127 (ignored)
I/include -I/include -c dynflds.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘dynflds.o’ failed
make[1]: [dynflds.o] Error 127 (ignored)
I/include -I/include -c getgist.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘getgist.o’ failed
make[1]: [getgist.o] Error 127 (ignored)
I/include -I/include -c getluse.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘getluse.o’ failed
make[1]: [getluse.o] Error 127 (ignored)
I/include -I/include -c getmet.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘getmet.o’ failed
make[1]: [getmet.o] Error 127 (ignored)
I/include -I/include -c getpblht.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘getpblht.o’ failed
make[1]: [getpblht.o] Error 127 (ignored)
I/include -I/include -c getsdt.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘getsdt.o’ failed
make[1]: [getsdt.o] Error 127 (ignored)
I/include -I/include -c getversion.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘getversion.o’ failed
make[1]: [getversion.o] Error 127 (ignored)
I/include -I/include -c graceful_stop.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘graceful_stop.o’ failed
make[1]: [graceful_stop.o] Error 127 (ignored)
I/include -I/include -c gridout.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘gridout.o’ failed
make[1]: [gridout.o] Error 127 (ignored)
I/include -I/include -c init_io.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘init_io.o’ failed
make[1]: [init_io.o] Error 127 (ignored)
I/include -I/include -c init_met.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘init_met.o’ failed
make[1]: [init_met.o] Error 127 (ignored)
I/include -I/include -c init_x.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘init_x.o’ failed
make[1]: [init_x.o] Error 127 (ignored)
I/include -I/include -c julian.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘julian.o’ failed
make[1]: [julian.o] Error 127 (ignored)
I/include -I/include -c layht.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘layht.o’ failed
make[1]: [layht.o] Error 127 (ignored)
I/include -I/include -c ll2xy_lam.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘ll2xy_lam.o’ failed
make[1]: [ll2xy_lam.o] Error 127 (ignored)
I/include -I/include -c ll2xy_lam_sec.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘ll2xy_lam_sec.o’ failed
make[1]: [ll2xy_lam_sec.o] Error 127 (ignored)
I/include -I/include -c ll2xy_lam_tan.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘ll2xy_lam_tan.o’ failed
make[1]: [ll2xy_lam_tan.o] Error 127 (ignored)
I/include -I/include -c ll2xy_merc.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘ll2xy_merc.o’ failed
make[1]: [ll2xy_merc.o] Error 127 (ignored)
I/include -I/include -c ll2xy_ps.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘ll2xy_ps.o’ failed
make[1]: [ll2xy_ps.o] Error 127 (ignored)
I/include -I/include -c locate.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘locate.o’ failed
make[1]: [locate.o] Error 127 (ignored)
I/include -I/include -c mapfac_lam.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mapfac_lam.o’ failed
make[1]: [mapfac_lam.o] Error 127 (ignored)
I/include -I/include -c mapfac_merc.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mapfac_merc.o’ failed
make[1]: [mapfac_merc.o] Error 127 (ignored)
I/include -I/include -c mapfac_ps.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mapfac_ps.o’ failed
make[1]: [mapfac_ps.o] Error 127 (ignored)
I/include -I/include -c metcro.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘metcro.o’ failed
make[1]: [metcro.o] Error 127 (ignored)
I/include -I/include -c metdot.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘metdot.o’ failed
make[1]: [metdot.o] Error 127 (ignored)
I/include -I/include -c metgrid2ctm.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘metgrid2ctm.o’ failed
make[1]: [metgrid2ctm.o] Error 127 (ignored)
I/include -I/include -c metvars2ctm.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘metvars2ctm.o’ failed
make[1]: [metvars2ctm.o] Error 127 (ignored)
I/include -I/include -c mm5v3opts.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘mm5v3opts.o’ failed
make[1]: [mm5v3opts.o] Error 127 (ignored)
I/include -I/include -c pblsup.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘pblsup.o’ failed
make[1]: [pblsup.o] Error 127 (ignored)
I/include -I/include -c ptemp.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘ptemp.o’ failed
make[1]: [ptemp.o] Error 127 (ignored)
I/include -I/include -c pvs.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘pvs.o’ failed
make[1]: [pvs.o] Error 127 (ignored)
I/include -I/include -c qsat.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘qsat.o’ failed
make[1]: [qsat.o] Error 127 (ignored)
I/include -I/include -c rdmm5v3.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘rdmm5v3.o’ failed
make[1]: [rdmm5v3.o] Error 127 (ignored)
I/include -I/include -c rdwrfem.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘rdwrfem.o’ failed
make[1]: [rdwrfem.o] Error 127 (ignored)
I/include -I/include -c readnml.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘readnml.o’ failed
make[1]: [readnml.o] Error 127 (ignored)
I/include -I/include -c readter.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘readter.o’ failed
make[1]: [readter.o] Error 127 (ignored)
I/include -I/include -c refstate.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘refstate.o’ failed
make[1]: [refstate.o] Error 127 (ignored)
I/include -I/include -c resistcalc.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘resistcalc.o’ failed
make[1]: [resistcalc.o] Error 127 (ignored)
I/include -I/include -c setgriddefs.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘setgriddefs.o’ failed
make[1]: [setgriddefs.o] Error 127 (ignored)
I/include -I/include -c setup.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘setup.o’ failed
make[1]: [setup.o] Error 127 (ignored)
I/include -I/include -c setup_mm5v3.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘setup_mm5v3.o’ failed
make[1]: [setup_mm5v3.o] Error 127 (ignored)
I/include -I/include -c setup_wrfem.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘setup_wrfem.o’ failed
make[1]: [setup_wrfem.o] Error 127 (ignored)
I/include -I/include -c sfclayer.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘sfclayer.o’ failed
make[1]: [sfclayer.o] Error 127 (ignored)
I/include -I/include -c statflds.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘statflds.o’ failed
make[1]: [statflds.o] Error 127 (ignored)
I/include -I/include -c vertarys.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘vertarys.o’ failed
make[1]: [vertarys.o] Error 127 (ignored)
I/include -I/include -c vertnhy.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘vertnhy.o’ failed
make[1]: [vertnhy.o] Error 127 (ignored)
I/include -I/include -c vertnhy_wrf.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘vertnhy_wrf.o’ failed
make[1]: [vertnhy_wrf.o] Error 127 (ignored)
I/include -I/include -c vstamp.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘vstamp.o’ failed
make[1]: [vstamp.o] Error 127 (ignored)
I/include -I/include -c vtemp.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘vtemp.o’ failed
make[1]: [vtemp.o] Error 127 (ignored)
I/include -I/include -c wind.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘wind.o’ failed
make[1]: [wind.o] Error 127 (ignored)
I/include -I/include -c wrfemopts.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘wrfemopts.o’ failed
make[1]: [wrfemopts.o] Error 127 (ignored)
I/include -I/include -c wrgdesc.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘wrgdesc.o’ failed
make[1]: [wrgdesc.o] Error 127 (ignored)
I/include -I/include -c xy2ll_lam.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘xy2ll_lam.o’ failed
make[1]: [xy2ll_lam.o] Error 127 (ignored)
I/include -I/include -c xy2ll_merc.f90
make[1]: I/include: Command not found
Makefile:136: recipe for target ‘xy2ll_merc.o’ failed
make[1]: [xy2ll_merc.o] Error 127 (ignored)
o mcip.exe -I/include -I/include mcip.o alloc_ctm.o alloc_met.o alloc_x.o bcldprc_ak.o blddesc.o chkwpshdr.o chkwrfhdr.o close_files.o collapx.o comheader.o cori.o dealloc_ctm.o dealloc_met.o dealloc_x.o detangle_soil_px.o e_aerk.o dynflds.o getgist.o getluse.o getmet.o getpblht.o getsdt.o getversion.o graceful_stop.o gridout.o init_io.o init_met.o init_x.o julian.o layht.o ll2xy_lam.o ll2xy_lam_sec.o ll2xy_lam_tan.o ll2xy_merc.o ll2xy_ps.o locate.o mapfac_lam.o mapfac_merc.o mapfac_ps.o metcro.o metdot.o metgrid2ctm.o metvars2ctm.o mm5v3opts.o pblsup.o ptemp.o pvs.o qsat.o rdmm5v3.o rdwrfem.o readnml.o readter.o refstate.o resistcalc.o setgriddefs.o setup.o setup_mm5v3.o setup_wrfem.o sfclayer.o statflds.o vertarys.o vertnhy.o vertnhy_wrf.o vstamp.o vtemp.o wind.o wrfemopts.o wrgdesc.o xy2ll_lam.o xy2ll_merc.o const_mod.o const_pbl_mod.o coord_mod.o date_time_mod.o date_pack_mod.o files_mod.o groutcom_mod.o luvars_mod.o mcipparm_mod.o mcoutcom_mod.o mdoutcom_mod.o metinfo_mod.o metvars_mod.o vgrd_mod.o wrf_netcdf_mod.o xvars_mod.o sat2mcip_mod.o -L/lib -L/lib
make[1]: o: Command not found
Makefile:131: recipe for target ‘mcip.exe’ failed
make[1]: [mcip.exe] Error 127 (ignored)
make[1]: Leaving directory ‘/home/ensiyeh/WRF-CMAQ/CMAQ_REPO/PREP/mcip/src’

Can you send me your script so that I can check and probably make changes to it?

Regards,

Catalyst

Hi
I changed Makefile of mcip and add -lnetcdff -lnetcdff and -lioapi and some flags and directory and it was installed.
My changes are:

IOAPI_DIR = /home/ensiyeh/WRF-CMAQ/CMAQ_REPO/lib/x86_64/intel/ioapi
NETCDF_DIR = /home/ensiyeh/WRF-CMAQ/CMAQ_REPO/lib/x86_64/intel/netcdf
myFC =ifort
myFRFLAGS ="-free"
FC = {myFC} FFLAGS = (myFRFLAGS) -I$(NETCDF_DIR)/include -I$(IOAPI_DIR)/include_files -qopenmp
LIBS = -L$(IOAPI_DIR)/lib -lioapi (ioapi_lib) \ -L(NETCDF_DIR)/lib -lnetcdff -lnetcdf $(extra_lib)

Good to know it’s worked.

Catalyst

Hi

I want to run ICON, but I can’t. The error is:

Value for IOAPI_CHECK_HEADERS not defined;returning default: FALSE

 >>> WARNING in subroutine CHKFIL3 <<<
 Inconsistent file attribute XORIG for file INIT_CONC_1     
 Value from file:  -2.44500703000000009D+05
 Value from caller:-1.09500358999999997D+05


 >>> WARNING in subroutine CHKFIL3 <<<
 Inconsistent file attribute YORIG for file INIT_CONC_1     
 Value from file:   2.41499844000000012D+05
 Value from caller:-9.60004220000000059D+04
 
 *** ERROR ABORT in subroutine OPN_IC_FILE
 Could not open nor create INIT_CONC_1      file

Could you guide me, please?
Thank you

icon.txt (34.1 KB)

You already may have a copy of the INIT_CONC_1 output file (/home/fce/OFFLINE/data/icon/ICON_v52_SE52BENCH_profile) existing on your system, and that file may have been created for a different target domain than the one you are trying to create with your run current script.

If this file does exist, try deleting it before running the script again. Alternatively, if you want to keep the existing file, set the name of INIT_CONC_1 to a new file in your run script.

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