I am trying a test case: Annual_rwc_12US1_2017gb_17j.csh. But had following error message:
Is this caused by system compiler conflict or system library missing?
> Linux2_x86_64ifort
> NOTE: Default MONTH setting to 'jan'
> /bin/ls: No match.
> /bin/ls: No match.
> /bin/ls: No match.
> /bin/ls: No match.
> SCRIPT NOTE: Setting months with no partial months
> Creating dataset /data/n203b/yiting/SMOKE-4.7/ge_dat/speciation/2017gb_17j/gspro_rwc_cmaq_cb6ae7_2017gb_17j_17j.txt
> using script combine_data.csh
> grep: 2619: No such file or directory
> Processing environment variables GSPROTMP_A
> Including file: /data/n203b/yiting/SMOKE-4.7/ge_dat/speciation/gspro_cmaq_cb6ae7_2017gb_17j_01may2020.txt
> Creating dataset /data/n203b/yiting/SMOKE-4.7/ge_dat/speciation/2017gb_17j/gsref_rwc_cmaq_cb6ae7_2017gb_17j_17j.txt
> using script combine_data.csh
> grep: 10529: No such file or directory
> Processing environment variables GSREFTMP_A
> Including file: /data/n203b/yiting/SMOKE-4.7/ge_dat/speciation/gsref_cmaq_cb6ae7_2017gb_17j_nf.txt
> ***testing*** SRGPRO_PATH set by SRGPRO input: /data/n203b/yiting/SMOKE-4.7/ge_dat/gridding/surrogates/CONUS12_2017NEI_18mar2020/
> Linux2_x86_64ifort
> /bin/rm: No match.
> /bin/rm: No match.
> Creating dataset /data/n203b/yiting/SMOKE-4.7/2017gb_17j/inputs/rwc/arinv_rwc_2017gb_17j.lst
> using script combine_data.csh
> Processing environment variables EMISINV_A
> SCRIPT NOTE: Scanning GSREF for duplicate records
> SCRIPT NOTE: No duplicates found in /data/n203b/yiting/SMOKE-4.7/ge_dat/speciation/2017gb_17j/gsref_rwc_cmaq_cb6ae7_2017gb_17j_17j.txt
> SCRIPT NOTE: Scanning AGREF for duplicate records
> SCRIPT NOTE: No duplicates found in /data/n203b/yiting/SMOKE-4.7/ge_dat/gridding/agref_us_2017platform_24apr2020_nf_v2.txt
> SCRIPT NOTE: Scanning ATREF for duplicate records
> SCRIPT NOTE: No duplicates found in /data/n203b/yiting/SMOKE-4.7/ge_dat/temporal/atref_2017platform_rwc_17apr2020_nf_v1
> Running part 1...
>
> SCRIPT NOTE: Automatically deleting log file.
> /data/n203b/yiting/SMOKE-4.7/2017gb_17j/intermed/rwc/logs/smkinven_rwc_2017gb_17j.log
>
>
> This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
> I/O Applications Programming Interface, [I/O API] which is
> built on top of the netCDF I/O library (Copyright 1993, 1996
> University Corporation for Atmospheric Research/Unidata
> Program) and the PVM parallel-programming library (from
> Oak Ridge National Laboratory).
> Copyright (C) 1992-2002 MCNC,
> (C) 1992-2013 Carlie J. Coats, Jr.,
> (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and
> (C) 2014-2016 UNC Institute for the Environment.
> Released under the GNU LGPL License, version 2.1. See URL
>
> https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html
>
> for conditions of use.
>
> ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $
> netCDF version 4.6.3-development of Jan 3 2019 15:31:42 $
>
> SMOKE ---------------
> Copyright (c)2004 Environmental Modeling for Policy Development
> All rights reserved
>
> Program SMKINVEN, Version SMOKEv4.6_Sep2018
> Online documentation
> http://www.cep.unc.edu/empd/products/smoke
>
> Program SMKINVEN to take ASCII area or point source files
> in IDA, EMS-95, or SMOKE list format, or mobile files
> in IDA format, and produce the I/O API and ASCII SMOKE
> inventory files and list of unique SCCs in the inventory.
>
>
> You will need to enter the logical names for the input and
> output files (and to have set them prior to program start,
> using "setenv <logicalname> <pathname>").
>
> You may use END_OF-FILE (control-D) to quit the program
> during logical-name entry. Default responses are given in
> brackets [LIKE THIS] and can be accepted by hitting the
> <RETURN> key.
>
> /data/n203b/yiting/SMOKE-4.7/smoke4.7/Linux2_x86_64ifort/smkinven: relocation error: /data/n203b/yiting/SMOKE-4.7/smoke4.7/Linux2_x86_64ifort/smkinven: symbol kmp_aligned_malloc, version VERSION not defined in file libiomp5.so with link time reference
> 0.009u 0.004s 0:00.68 0.0% 0+0k 0+24io 0pf+0w
> SCRIPT NOTE: timetracker is replacing line 2 of the TIMELOG file
> now checking log file /data/n203b/yiting/SMOKE-4.7/2017gb_17j/intermed/rwc/logs/smkinven_rwc_2017gb_17j.log
> *******************************
> * ERROR detected in logfile:
> * /data/n203b/yiting/SMOKE-4.7/2017gb_17j/intermed/rwc/logs/smkinven_rwc_2017gb_17j.log
> *******************************
> ERROR: detected in Smkinven
> ERROR: Running smk_run for one-time steps
> log analyzer
> Getting message data (might take some time)....
> grep: /data/n203b/yiting/SMOKE-4.7/2017gb_17j/intermed/rwc/logs: Is a directory
> grep: /data/n203b/yiting/SMOKE-4.7/2017gb_17j/intermed/rwc/logs: Is a directory
> Finished getting data
> Classifying message types...
> Total number of known messages: 2
> Total number of unknown messages: 0
> Level 3 analysis...
> Finished classifying message types
> log analyzer
> Getting message data (might take some time)....
> grep: /data/n203b/yiting/SMOKE-4.7/2017gb_17j/intermed/rwc/logs: Is a directory
> grep: /data/n203b/yiting/SMOKE-4.7/2017gb_17j/intermed/rwc/logs: Is a directory
> Finished getting data
> Classifying message types...
> Total number of known messages: 2
> Total number of unknown messages: 0
> Level 1 analysis...
> Finished classifying message types
> Testing for exit priority <= 1
> All message priorities > 1