Netcdf-3.6.3 issue when compiling in folder "cxx"

CMAQ Compiling
1

Dear all,
I was installing netcdf-3.6.3. When I executed “make” in folder netcdf-3.6.3, there were errors.

Making all in cxx
make[2]: Entering directory `/disk2/public/usr_local/LIBRARIES/netcdf-3.6.3/cxx'
depbase=`echo netcdf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX   --mode=compile icpc -DHAVE_CONFIG_H -I. -I.. -I../fortran      -I../libsrc   -g -O2 -MT netcdf.lo -MD -MP -MF $depbase.Tpo -c -o netcdf.lo netcdf.cpp &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  icpc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -g -O2 -MT netcdf.lo -MD -MP -MF .deps/netcdf.Tpo -c netcdf.cpp -o netcdf.o
/usr/include/c++/4.8.5/ext/atomicity.h(49): error: identifier "__ATOMIC_ACQ_REL" is undefined
    { return __atomic_fetch_add(__mem, __val, __ATOMIC_ACQ_REL); }
                                              ^

/usr/include/c++/4.8.5/ext/atomicity.h(49): error: identifier "__atomic_fetch_add" is undefined
    { return __atomic_fetch_add(__mem, __val, __ATOMIC_ACQ_REL); }
             ^

/usr/include/c++/4.8.5/ext/atomicity.h(53): error: identifier "__ATOMIC_ACQ_REL" is undefined
    { __atomic_fetch_add(__mem, __val, __ATOMIC_ACQ_REL); }
                                       ^

/usr/include/c++/4.8.5/ext/atomicity.h(53): error: identifier "__atomic_fetch_add" is undefined
    { __atomic_fetch_add(__mem, __val, __ATOMIC_ACQ_REL); }

compilation aborted for netcdf.cpp (code 2)
make[2]: *** [netcdf.lo] Error 1
make[2]: Leaving directory `/disk2/public/usr_local/LIBRARIES/netcdf-3.6.3/cxx'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/disk2/public/usr_local/LIBRARIES/netcdf-3.6.3'
make: *** [all] Error 2

other information:

  1. Linux 3.10.0-1062.el7.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
  2. I have successfully installed zlib-1.2.3, hdf5-1.10.4, jasper-1.701.0 and libpng-1.2.12 in folder netcdf.
  3. compilation process: see “m.log”
  4. the compiler is intel-11.1.072 (icc and ifort)
  5. the global variables are:
# Intel Compiler 11.1
source /opt/intel/Compiler/11.1/072/bin/intel64/ifortvars_intel64.sh intel64
source /opt/intel/Compiler/11.1/072/bin/intel64/iccvars_intel64.sh intel64
export LD_LIBRARY_PATH=/opt/intel/Compiler/11.1/072/lib/intel64/:$LD_LIBRARY_PATH

#module load
export CC=icc
export CXX=icpc
export FC=ifort
export CFLAGS=-m64
export F77=ifort
export FFLAGS=-m64
export F90=ifort

I would appreciate it if you would take the time out of your busy schedule to check out my posts and give suggestions.
Best regards,
Janice
m.log.txt (21.9 KB)

2

Now it is solved.
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