Please take a look at Issue CMAQv5.2.1-i2 on the Known Issues page for v5.2.1 and let us know if the fix that is provided is able to resolve the error.
…NetCDF Version 4.1 and later also split the Fortran interfaces into a separate library libnetcdff.a As a result, much compatiblity with the infrastructure (Makefiles, etc.) is broken: you must modify all Makefiles, replacing -lnetcdf with lnetcdff -lnetcdf …
Carlie J. Coats, Jr., Ph.D. I/O API Author/Maintainer
@cjcoats Please, below is the response I got while trying to configure CMAQ:
ERROR: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2.1/lib/x86_64/gcc/netcdf/lib/libnetcdf.a does not exist in your CMAQ_LIB directorysource config_cmaq.csh gcc! Check your installation before proceeding with CMAQ build.
Also, while compiling ICON and BCON:
rm: No match.
mpif90: Command not found.
mpif90: Command not found.
mpif90: Command not found.
mpif90: Command not found.
mpif90: No match.
Thanks for your response. But the problems still persist after installing netcdf-c-4.6.3 and netcdf-fortran-4.4.4 following your instructions.
The I/O API Version 3.2 couldn’t be installed on my system too. My system’s linux version is ‘‘x86_64-linux-gnu’’ and is not listed among the versions compatible with the I/0 API.
source config_cmaq.csh gcc 7.3.0
Compiler is set to gcc
ERROR: /home/catalyst/Desktop/Build_WRF/CMAQ-5.2.1/lib/x86_64/gcc7.3.0/netcdf/lib/libnetcdf.a does not exist in your CMAQ_LIB directorysource config_cmaq.csh gcc 7.3.0! Check your installation before proceeding with CMAQ build.
Carlie J. Coats, Jr., Ph.D. I/O API Author/Maintainer
Senior Software Engineer cjcoats@email.unc.edu
UNC Institute for the Environment www.ie.unc.edu
100 Europa Dr., Suite 490 / Campus Box 1105 Tel 919.843.5951
Chapel Hill, NC 27599-1105 Fax 919.966.9920
Makefile:95: home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/ioapi/Makeinclude.Linux2_x86_64gfort: No such file or directory
make: *** No rule to make target ‘home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/ioapi/Makeinclude.Linux2_x86_64gfort’. Stop.
Hello Lizadams,
This is what I got:
catalyst-Precision-Tower-3620:~/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/ioapi% make
cd /home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/Linux2_x86_64gfort; ar rsv libioapi.a m3utilio.o modgctp.o modwrfio.o modmpasfio.o modatts3.o modncfio.o modpdata.o
/bin/sh: 1: cd: can’t cd to /home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/Linux2_x86_64gfort
r - m3utilio.o
r - modgctp.o
r - modwrfio.o
r - modmpasfio.o
r - modatts3.o
r - modncfio.o
r - modpdata.o
cd /home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/Linux2_x86_64gfort; ar rsv libioapi.a bilin.o bmatvec.o chkbuf3.o ckdesc3.o ckfile3.o ckgeom.o ckname.o crtbuf3.o currstep.o dble2real.o dbllist.o dmatvec.o dscgrid.o dt2str.o filchk3.o find1.o find2.o find3.o find4.o findc.o findr1.o findr2.o findr3.o findr4.o flush3.o gcd.o gctp.o getdble.o getmenu.o getnum.o getreal.o getstr.o getyn.o grdchk3.o gridops.o hhmmss.o index1.o initblk3.o intg2real.o intlist.o ioparms3.o lambert.o lblank.o len2.o ll2utm.o locat1.o locat2.o locat3.o locat4.o locatc.o locatr1.o locatr2.o locatr3.o locatr4.o lustr.o m3warn.o name2fid.o pcoef.o pgrdsum.o pmatvec.o poly.o promptdfile.o promptffile.o promptgrid.o promptmfile.o rdbndary.o rdbuf3.o rdcustom.o rdgrdded.o readsmet.o realist.o scanint.o setsphere.o sec2time.o str2dble.o skipl.o smatvec.o splitline.o str2int.o str2real.o strlist.o synchtao.o time2sec.o trimlen.o ungridb.o ungridi.o upcase.o utm2ll.o wrbndary.o wrbuf3.o wrcustom.o wrgrdded.o xtbuf3.o year4.o chkfil3.o cktflag3.o crdict3.o crtkf.o kfindx.o kfopen.o m3abort.o modgctp.o opnlist3.o rddict3.o rdiddata.o rdsmatrx.o runspec.o sync3.o wrdict3.o wriddata.o wrsmatrx.o xtract3.o
/bin/sh: 1: cd: can’t cd to /home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/Linux2_x86_64gfort
r - bilin.o
r - bmatvec.o
r - chkbuf3.o
r - ckdesc3.o
r - ckfile3.o
r - ckgeom.o
r - ckname.o
r - crtbuf3.o
r - currstep.o
r - dble2real.o
r - dbllist.o
r - dmatvec.o
r - dscgrid.o
r - dt2str.o
r - filchk3.o
r - find1.o
r - find2.o
r - find3.o
r - find4.o
r - findc.o
r - findr1.o
r - findr2.o
r - findr3.o
r - findr4.o
r - flush3.o
r - gcd.o
r - gctp.o
r - getdble.o
r - getmenu.o
r - getnum.o
r - getreal.o
r - getstr.o
r - getyn.o
r - grdchk3.o
r - gridops.o
r - hhmmss.o
r - index1.o
r - initblk3.o
r - intg2real.o
r - intlist.o
r - ioparms3.o
r - lambert.o
r - lblank.o
r - len2.o
r - ll2utm.o
r - locat1.o
r - locat2.o
r - locat3.o
r - locat4.o
r - locatc.o
r - locatr1.o
r - locatr2.o
r - locatr3.o
r - locatr4.o
r - lustr.o
r - m3warn.o
r - name2fid.o
r - pcoef.o
r - pgrdsum.o
r - pmatvec.o
r - poly.o
r - promptdfile.o
r - promptffile.o
r - promptgrid.o
r - promptmfile.o
r - rdbndary.o
r - rdbuf3.o
r - rdcustom.o
r - rdgrdded.o
r - readsmet.o
r - realist.o
r - scanint.o
r - setsphere.o
r - sec2time.o
r - str2dble.o
r - skipl.o
r - smatvec.o
r - splitline.o
r - str2int.o
r - str2real.o
r - strlist.o
r - synchtao.o
r - time2sec.o
r - trimlen.o
r - ungridb.o
r - ungridi.o
r - upcase.o
r - utm2ll.o
r - wrbndary.o
r - wrbuf3.o
r - wrcustom.o
r - wrgrdded.o
r - xtbuf3.o
r - year4.o
r - chkfil3.o
r - cktflag3.o
r - crdict3.o
r - crtkf.o
r - kfindx.o
r - kfopen.o
r - m3abort.o
r - modgctp.o
r - opnlist3.o
r - rddict3.o
r - rdiddata.o
r - rdsmatrx.o
r - runspec.o
r - sync3.o
r - wrdict3.o
r - wriddata.o
r - wrsmatrx.o
r - xtract3.o
cd /home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/Linux2_x86_64gfort; ar rsv libioapi.a cbarnes1.o cbarnesN.o check3.o crlf.o currec.o daymon.o ddtvar3.o ddtvar3v.o getdate.o getdfile.o getefile.o getffile.o initlog3.o interp3.o isdstime.o jstep3.o julian.o junit.o m3err.o m3exit.o m3msg2.o mmddyy.o nextime.o read3.o read4d.o secsdiff.o wkday.o write3.o write4d.o yr2day.o close3.o crtfil3.o desc3.o init3.o inqatt3.o kfread.o kfwrite.o open3.o opnfil3.o opnkf.o opnlog3.o pn_crtfil3.o pn_opnfil3.o pn_wrvars.o rdatt3.o rdgrnest.o rdprofil.o rdtflag.o rdvars.o shut3.o syncfid.o wratt3.o wrgrnest.o wrmpigrd.o wrpatch.o wrprofil.o wrtflag.o wrvars.o
/bin/sh: 1: cd: can’t cd to /home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/Linux2_x86_64gfort
r - cbarnes1.o
r - cbarnesN.o
r - check3.o
r - crlf.o
r - currec.o
r - daymon.o
r - ddtvar3.o
r - ddtvar3v.o
r - getdate.o
r - getdfile.o
r - getefile.o
r - getffile.o
r - initlog3.o
r - interp3.o
r - isdstime.o
r - jstep3.o
r - julian.o
r - junit.o
r - m3err.o
r - m3exit.o
r - m3msg2.o
r - mmddyy.o
r - nextime.o
r - read3.o
r - read4d.o
r - secsdiff.o
r - wkday.o
r - write3.o
r - write4d.o
r - yr2day.o
r - close3.o
r - crtfil3.o
r - desc3.o
r - init3.o
r - inqatt3.o
r - kfread.o
r - kfwrite.o
r - open3.o
r - opnfil3.o
r - opnkf.o
r - opnlog3.o
r - pn_crtfil3.o
r - pn_opnfil3.o
r - pn_wrvars.o
r - rdatt3.o
r - rdgrnest.o
r - rdprofil.o
r - rdtflag.o
r - rdvars.o
r - shut3.o
r - syncfid.o
r - wratt3.o
r - wrgrnest.o
r - wrmpigrd.o
r - wrpatch.o
r - wrprofil.o
r - wrtflag.o
r - wrvars.o
cd /home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/Linux2_x86_64gfort; ar rsv libioapi.a bufint3.o check3c.o close3c.o currstepc.o daymonc.o ddtvar3c.o desc3c.o dscgridc.o dt2strc.o envgets.o filchk3c.o findsc.o get_endian.o getdfilec.o getdttime.o getefilec.o hhmmssc.o init3c.o inqatt3c.o interp3c.o iobin3.o julianc.o locatsc.o m3errc.o m3exitc.o m3mesgc.o m3warnc.o mmddyyc.o nameval.o nextimec.o open3c.o rdatt3c.o read3c.o read4dc.o rmfile.o sec2timec.o secsdiffc.o shut3c.o sleep3.o sortic.o sortir.o sortis.o sync3c.o systemf.o time2secc.o wkdayc.o wratt3c.o write3c.o write4dc.o xtract3c.o iocpl.o iocplf2c.o
/bin/sh: 1: cd: can’t cd to /home/catalyst/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/Linux2_x86_64gfort
r - bufint3.o
r - check3c.o
r - close3c.o
r - currstepc.o
r - daymonc.o
r - ddtvar3c.o
r - desc3c.o
r - dscgridc.o
r - dt2strc.o
r - envgets.o
r - filchk3c.o
r - findsc.o
r - get_endian.o
r - getdfilec.o
r - getdttime.o
r - getefilec.o
r - hhmmssc.o
r - init3c.o
r - inqatt3c.o
r - interp3c.o
r - iobin3.o
r - julianc.o
r - locatsc.o
r - m3errc.o
r - m3exitc.o
r - m3mesgc.o
r - m3warnc.o
r - mmddyyc.o
r - nameval.o
r - nextimec.o
r - open3c.o
r - rdatt3c.o
r - read3c.o
r - read4dc.o
r - rmfile.o
r - sec2timec.o
r - secsdiffc.o
r - shut3c.o
r - sleep3.o
r - sortic.o
r - sortir.o
r - sortis.o
r - sync3c.o
r - systemf.o
r - time2secc.o
r - wkdayc.o
r - wratt3c.o
r - write3c.o
r - write4dc.o
r - xtract3c.o
r - iocpl.o
r - iocplf2c.o
catalyst-Precision-Tower-3620:~/Desktop/Build_WRF/LIBRARIES/ioapi-3.2/ioapi%
Hello lizadams,
Thanks a lot, I’ve been able to install ioapi and CMAQ as well. However, I’m still having issues with MCIP compilation. Below is what I got:
make[1]: Entering directory ‘/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src’
make[1]: ‘const_mod.o’ is up to date.
make[1]: ‘const_pbl_mod.o’ is up to date.
make[1]: ‘coord_mod.o’ is up to date.
make[1]: ‘date_time_mod.o’ is up to date.
make[1]: ‘date_pack_mod.o’ is up to date.
make[1]: ‘files_mod.o’ is up to date.
make[1]: ‘groutcom_mod.o’ is up to date.
make[1]: ‘luvars_mod.o’ is up to date.
gfortran -ffree-form -ffree-line-length-none -funroll-loops -finit-character=32 -I/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/lib/x86_64/gcc7.3.0/netcdf/include -I/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/lib/x86_64/gcc7.3.0/ioapi/include -c mcipparm_mod.f90
mcipparm_mod.f90:126:6:
USE m3utilio, ONLY: mxdesc3
1
Fatal Error: Can’t open module file ‘m3utilio.mod’ for reading at (1): No such file or directory
compilation terminated.
Makefile:136: recipe for target ‘mcipparm_mod.o’ failed
make[1]: *** [mcipparm_mod.o] Error 1
make[1]: Leaving directory ‘/home/catalyst/Desktop/Build_WRF/CMAQ-5.2/PREP/mcip/src’
Makefile:127: recipe for target ‘all’ failed
make: *** [all] Error 2
Please verify the location of the m3utilio.mod file. Once you have found it’s location use that path in your Makefile, after the -I
for instance, my version is available here:
ls /proj/ie/proj/staff/lizadams/ioapi-3.2/Linux3_x86_64_openmpi_3.0.0_gcc_6.3.0/*.mod
/proj/ie/proj/staff/lizadams/ioapi-3.2/Linux3_x86_64_openmpi_3.0.0_gcc_6.3.0/m3utilio.mod
for example I used the following setting in my Makefile