CCTM cannot finalize output

fang63 · October 23, 2018, 8:33am

Good morning CMAQ users:
I am having trouble for generating output for CCTM, using my own emission file and meteorology file to run. While, It does not show any error message.
I am aware that these two messages showing several time, I am not sure whether it is the reason.

>>—>> WARNING in subroutine OPEN3
File not available.
NCAGTC: : NetCDF: Attribute not found

Does anyone know how to deal with it?
I am just including the running log there in case

github.com

fang63/test/blob/master/cctm.log

Compiler is set to intel

model       CCTM_v521.exe;

repo        /scratch/brown/fang63/CMAQ-5.2.1/src/CCTM/src;

mechanism   cb6r3_ae6_aq;

lib_base    /scratch/brown/fang63/CMAQ-5.2.1/lib/x86_64/intel;

lib_1       ioapi/modules;

lib_2       ioapi/include_files;

lib_3       "mpi -I.";


lib_4       ioapi/lib;

cpp_flags   " -Dparallel  -DSUBST_BARRIER=SE_BARRIER -DSUBST_GLOBAL_MAX=SE_GLOBAL_MAX -DSUBST_GLOBAL_MIN=SE_GLOBAL_MIN -DSUBST_GLOBAL_MIN_DATA=SE_GLOBAL_MIN_DATA -DSUBST_GLOBAL_TO_LOCAL_COORD=SE_GLOBAL_TO_LOCAL_COORD -DSUBST_GLOBAL_SUM=SE_GLOBAL_SUM -DSUBST_GLOBAL_LOGICAL=SE_GLOBAL_LOGICAL -DSUBST_LOOP_INDEX=SE_LOOP_INDEX -DSUBST_SUBGRID_INDEX=SE_SUBGRID_INDEX -DSUBST_HI_LO_BND_PE=SE_HI_LO_BND_PE -DSUBST_SUM_CHK=SE_SUM_CHK -DSUBST_INIT_ARRAY=SE_INIT_ARRAY -DSUBST_COMM=SE_COMM -DSUBST_MY_REGION=SE_MY_REGION -DSUBST_SLICE=SE_SLICE -DSUBST_GATHER=SE_GATHER -DSUBST_DATA_COPY=SE_DATA_COPY -DSUBST_IN_SYN=SE_IN_SYN";

This file has been truncated. show original

wong.david-c · November 5, 2018, 7:41pm

Hi Fang63,

Could you please provide all the log files to determine the exact error message and then the cause? You can send them directly to wong.david-c@epa.gov.

Cheers,
David

cjcoats · January 22, 2019, 4:09pm

The message “NCAGTC: : NetCDF: Attribute not found” strongly suggests that the relevant input file was NOT a proper I/O API file. Where did it come from? Were they created by programs that used the I/O API., or did someone attempt to hack their creation using NCO’s or such. The latter is NOT supported.

Note (see the I/O API Home Page at https://cjcoats.github.io/ioapi/index.html or https://www.cmascenter.org/ioapi/documentation/all_versions/html/index.html):

The Models-3 I/O API is a programming interface(https://en.wikipedia.org/wiki/Application_programming_interface), not a data format !!
I/O API files are not synonymous with “netCDF files” !!**

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CCTM cannot finalize output

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