The INIT_CONC_1 file is typically the initial concentration file that is read in by CMAQ.
For example, in the benchmark case, for the first day’s run, the following file is used for initial conditions:
“INIT_CONC_1” opened as OLD:READ-ONLY
File name “/proj/ie/proj/CMAS/CMAQ/CMAQv5.3.2_rel2/openmpi_4.0.1_gcc_9.1.0_2/data/2016_12SE1_2day/icbc/ICON_20160630_bench.nc”
On the second day, the previous day’s CGRID file is used for the initial conditions for the next day model run.
"INIT_CONC_1" opened as OLD:READ-ONLY
File name "/proj/ie/proj/CMAS/CMAQ/CMAQv5.3.2_rel2/openmpi_4.0.1_gcc_9.1.0_2/data/output_CCTM_v532_gcc_Bench_2016_12SE1_36pe/CCTM_CGRID_v532_gcc_Bench_2016_12SE1_20160701.nc"
So, if you are running a multiple-day simulation, and the previous CGRID file wasn’t created correctly, then you would obtain an abort when trying to read in the Initial Conditions file for the next day.
You can check whether the first day’s input file was written using grep on that day’s log.
For example looking at the first day’s log and gripping for CGRID, we can see that it was created:
Set of variables (possibly) reduced from CGRID
use the "one-step" CGRID file
Layer mapping (CGRID to AGRID):
CGRID_SPC SPC SURROGATE ISRG IDX
CGRID_SPC SPC SURROGATE ISRG IDX
S_CGRID :/proj/ie/proj/CMAS/CMAQ/CMAQv5.3.2_rel2/openmpi_4.0.1_gcc_9.1.0_2/data/output_CCTM_v532_gcc_Bench_2016_12SE1_36pe/CCTMCGRID_v532_gcc_Bench_2016_12SE1_20160701.nc
Could not open S_CGRID file for update - try to open new
State CGRID File Header Description:
State CGRID File Variable List:
"S_CGRID" opened as NEW(READ-WRITE )
File name "/proj/ie/proj/CMAS/CMAQ/CMAQv5.3.2_rel2/openmpi_4.0.1_gcc_9.1.0_2/data/output_CCTM_v532_gcc_Bench_2016_12SE1_36pe/CCTM_CGRID_v532_gcc_Bench_2016_12SE1_20160701.nc"
Timestep written to S_CGRID for date and time 2016184:000000