Compile error in icon

CMAQ
1

Hello everyone, I’m trying to compile CMAQ-5.2. But error occurs while compiling the ICON process. So i need your help！Thanks!
Compiler is set to intel
set ICON_SRC = /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src
setenv REPOROOT /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src
set Mechs = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS
set VRSN = v52
set INPT = profile
set EXEC = ICON_v52_profile.exe
set CFG = ICON_v52_profile.cfg
set CompileBLDMAKE
set CopySrc
set ModCommon = common
set ModType = profile
set ModMech = prof_data/cb05_ae6_aq
set Mechanism = cb05e51_ae6_aq/
set Tracer = trac0
set FC = mpiifort
set FP = mpiifort
setenv BLDER /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe
set xLib_Base = /opt/ifort
set xLib_1 = ioapi31/Linux2_x86_64ifort
set xLib_2 = ioapi31/ioapi/fixed_src
set xLib_4 = ioapi31/Linux2_x86_64ifort
set FSTD = -O3 -fno-alias -mp1 -fp-model source
set DBG = -O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback
set F_FLAGS = -fixed -132
set F90_FLAGS = -free
set CPP_FLAGS =
set LINK_FLAGS =
set LIB1 = -lioapi
set LIB2 = -lnetcdf
if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2 || ! -e /opt/ifort ) then
echo Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2
Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2
echo library path: /opt/ifort
library path: /opt/ifort
if ( 0 ) then
set BLD_OS = uname -s
uname -s
if ( Linux != Linux ) then
set Bld = /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel ) then
mkdir /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
else
cd /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
if ( 1 ) then
/bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51_ae6_aq//AE_cb05e51_ae6_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51_ae6_aq//GC_cb05e51_ae6_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51_ae6_aq//NR_cb05e51_ae6_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
/bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/trac0/Species_Table_TR_0.nml /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
else
set Cfile = ICON_v52_profile.cfg.bld
set quote = "
echo
echo model ICON_v52_profile.exe;
echo
echo repo /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src;
echo
echo mechanism cb05e51_ae6_aq/;
echo
echo lib_base /opt/ifort;
echo
echo lib_1 ioapi31/Linux2_x86_64ifort;
echo
echo lib_2 ioapi31/ioapi/fixed_src;
echo
echo lib_4 ioapi31/Linux2_x86_64ifort;
echo
set text = “”;
echo cpp_flags “”;
echo
echo f_compiler mpiifort;
echo
echo fstd “-O3 -fno-alias -mp1 -fp-model source”;
echo
echo dbg “-O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback”;
echo
echo f_flags “-fixed -132”;
echo
echo f90_flags “-free”;
echo
echo link_flags “”;
echo
echo ioapi “-lioapi”;
echo
echo netcdf "-lnetcdf ";
echo

set text=// mechanism:
echo // mechanism: cb05e51_ae6_aq/
echo // project repository: /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src
echo
set text = common
echo // required common
echo Module common;
echo
set text = profile, m3conc, tracer
echo // options are profile, m3conc, tracer
echo Module profile;
echo
set text = cb05, saprc99, saprc07t
echo // options are cb05, saprc99, saprc07t
echo Module prof_data/cb05_ae6_aq;
echo
if ( 0 ) then
unalias mv rm
if ( 1 || ! -f /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe ) then
cd /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/scripts
./bldit_bldmake.csh
rm: No match.
mpiifort: Command not found.
mpiifort: Command not found.
mpiifort: Command not found.
mpiifort: Command not found.
mpiifort: No match.

ERROR BLDMAKE Compile failed

endif
set Blder = /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -serial -verbose
cd /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
if ( 0 ) then
if ( 1 ) then
/disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -serial -verbose ICON_v52_profile.cfg.bld
/disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe: Command not found.
else
endif
mv Makefile Makefile.intel
mv: cannot stat `Makefile’: No such file or directory
if ( 1 != 0 ) then
echo *** failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -serial -verbose ***
*** failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -serial -verbose ***
exit 1

3

You can run command “which mpiifort” to check if mpiifort is available in your workstation. From the error message, it indicates that mpiifort is not available in your system.

4

Your system may be using mpifort rather than mpiifort. Please verify the command, and then edit the script to use the correct one.

5

Thank you. I just confirmed that there is mpifort in our server, but there is no mpiifort. I want to install CMAQ using an intel compiler. Do I need to download Intel mpi? Or how to solve it? Looking forward to your reply!

6

Hello, teachers. I have solved the problem with mpiifort, but it still doesn’t compile. Can you tell me what are the reasons for the following questions?

Compiler is set to intel
set ICON_SRC = /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src
setenv REPOROOT /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src
set Mechs = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS
set VRSN = v52
set INPT = profile
set EXEC = ICON_v52_profile.exe
set CFG = ICON_v52_profile.cfg
set CompileBLDMAKE
set CopySrc
set ModCommon = common
set ModType = profile
set ModMech = prof_data/cb05_ae6_aq
set Mechanism = cb05e51_ae6_aq/
set Tracer = trac0
set FC = mpiifort
set FP = mpiifort
setenv BLDER /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe
set xLib_Base = /disk1/scl/CMAQ/CMAQ-5.2/lib
set xLib_1 = ioapi/Linux2_x86_64ifort
set xLib_2 = ioapi/ioapi/fixed_src
set xLib_4 = ioapi/Linux2_x86_64ifort
set FSTD = -O3 -fno-alias -mp1 -fp-model source
set DBG = -O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback
set F_FLAGS = -fixed -132
set F90_FLAGS = -free
set CPP_FLAGS =
set LINK_FLAGS =
set LIB1 = -lioapi
set LIB2 = -lnetcdff -lnetcdf
if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2 || ! -e /disk1/scl/CMAQ/CMAQ-5.2/lib ) then
echo Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2
Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2
echo library path: /disk1/scl/CMAQ/CMAQ-5.2/lib
library path: /disk1/scl/CMAQ/CMAQ-5.2/lib
if ( 0 ) then
set BLD_OS = uname -s
uname -s
if ( Linux != Linux ) then
set Bld = /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel ) then
if ( ! -d /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel ) then
endif
cd /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
if ( 1 ) then
/bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51_ae6_aq//AE_cb05e51_ae6_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51_ae6_aq//GC_cb05e51_ae6_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/cb05e51_ae6_aq//NR_cb05e51_ae6_aq.nml /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
/bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS/trac0/Species_Table_TR_0.nml /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
else
set Cfile = ICON_v52_profile.cfg.bld
set quote = "
echo
echo model ICON_v52_profile.exe;
echo
echo repo /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src;
echo
echo mechanism cb05e51_ae6_aq/;
echo
echo lib_base /disk1/scl/CMAQ/CMAQ-5.2/lib;
echo
echo lib_1 ioapi/Linux2_x86_64ifort;
echo
echo lib_2 ioapi/ioapi/fixed_src;
echo
echo lib_4 ioapi/Linux2_x86_64ifort;
echo
set text = “”;
echo cpp_flags “”;
echo
echo f_compiler mpiifort;
echo
echo fstd “-O3 -fno-alias -mp1 -fp-model source”;
echo
echo dbg “-O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback”;
echo
echo f_flags “-fixed -132”;
echo
echo f90_flags “-free”;
echo
echo link_flags “”;
echo
echo ioapi “-lioapi”;
echo
echo netcdf "-lnetcdff -lnetcdf ";
echo

set text=// mechanism:
echo // mechanism: cb05e51_ae6_aq/
echo // project repository: /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src
echo
set text = common
echo // required common
echo Module common;
echo
set text = profile, m3conc, tracer
echo // options are profile, m3conc, tracer
echo Module profile;
echo
set text = cb05, saprc99, saprc07t
echo // options are cb05, saprc99, saprc07t
echo Module prof_data/cb05_ae6_aq;
echo
if ( 0 ) then
unalias mv rm
if ( 1 || ! -f /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe ) then
cd /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/scripts
./bldit_bldmake.csh
endif
set Blder = /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -serial -verbose
cd /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/scripts/BLD_ICON_v52_profile_intel
if ( 0 ) then
if ( 1 ) then
/disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -serial -verbose ICON_v52_profile.cfg.bld
REPOROOT set to:/disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src

Model set to ICON_v52_profile.exe
Repository set to /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src
Mechanism set to cb05e51_ae6_aq/
LIB_BASE set to /disk1/scl/CMAQ/CMAQ-5.2/lib
LIB_1 set to ioapi/Linux2_x86_64ifort
LIB_2 set to ioapi/ioapi/fixed_src
LIB_4 set to ioapi/Linux2_x86_64ifort
CPP_FLAGS set to
F_COMPILER set to mpiifort
FSTD set to -O3 -fno-alias -mp1 -fp-model source
DBG set to -O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback
f_flags set to -fixed -132
f90_flags set to -free
LINK_FLAGS set to
IOAPI set to -lioapi
NETCDF set to -lnetcdff -lnetcdf

Building file list for module common
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/CGRID_SPCS.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/findex.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/gc_spc_map.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/get_envlist.f added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/HGRD_DEFN.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/icon.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/IC_PARMS.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/lat_lon.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/lr_interp.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/lst_spc_map.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/ngc_spc_map.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/opn_ic_file.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/setup_logdev.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/subhdomain.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/UTILIO_DEFN.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/common/VGRD_DEFN.F added to make list

Building file list for module profile
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/profile/prof_driver.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/profile/prof_icout.F added to make list
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/profile/prof_vinterp.F added to make list

Building file list for module prof_data/cb05_ae6_aq
file /disk1/scl/CMAQ/CMAQ-5.2/PREP/icon/src/prof_data/cb05_ae6_aq/ic_profile_CB05.dat added to make list

Determining global module files
file CGRID_SPCS.F determined to be global
file HGRD_DEFN.F determined to be global
file IC_PARMS.F determined to be global
file UTILIO_DEFN.F determined to be global
file VGRD_DEFN.F determined to be global

*** Program terminated on Error ***

 Cannot create FILE [Makefile]

else
endif
mv Makefile Makefile.intel
mv: accessing `Makefile.intel’: Too many levels of symbolic links
if ( 1 != 0 ) then
echo *** failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -serial -verbose ***
*** failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -serial -verbose ***
exit 1

7

The obvious thing is to check permissions, e.g., on the directory for Makefile, or whether there already exists a Makefile for which you do not have WRITE permissions…

8

Thank you for your reply. I tried to change the permissions with chomd, but still couldn’t. The permission of the folder scl (the account given by my teacher) where CMAQ is located is drwxr-xr-x, Can I create makefile with this permission?