Thanks for your reply, The first thing I compiled was the CMAQ icon section. I just tried to compile CCTM first, but the same problem occurred, lmpifort could not be found.
I get the following error:
Compiler is set to intel
setenv CCTM_SRC /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src
set GlobInc = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL
set Mechs = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/MECHS
setenv REPOROOT /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src
set VRSN = v52
set EXEC = CCTM_v52.exe
set CFG = CCTM_v52.cfg
set CompileBLDMAKE
set CopySrc
set ParOpt
set ModDriver = driver/wrf
set ModInit = init/yamo
set ModGrid = grid/cartesian
set ModCpl = couple/gencoor_wrf
set ModHadv = hadv/yamo
set ModVadv = vadv/wrf
set ModHdiff = hdiff/multiscale
set ModVdiff = vdiff/acm2
set ModDepv = depv/m3dry
set ModEmis = emis/emis
set ModBiog = biog/beis3
set ModPlmrs = plrise/smoke
set ModCgrds = spcs/cgrid_spcs_nml
set ModPhot = phot/inline
set Mechanism = cb05e51_ae6_aq
set ModGas = gas/ebi_cb05e51_ae6_aq
set ModAero = aero/aero6
set ModCloud = cloud/acm_ae6
set ModUtil = util/util
set Tracer = trac0
set ModPa = procan/pa
set ModPvO3 = pv_o3
setenv FC mpiifort
set FP = mpiifort
set CC = icc
setenv BLDER /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe
set NETCDF = /disk1/scl/CMAQ/CMAQ-5.2/lib/netcdf/lib -lnetcdff -lnetcdf
set PNETCDF = /lib
set FSTD = -O3 -fno-alias -mp1 -fp-model source
set DBG = -O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback
setenv F_FLAGS -fixed -132
set F90_FLAGS = -free
set CPP_FLAGS =
set C_FLAGS = -O2 -DFLDMN -I
set LINK_FLAGS =
if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2 || ! -e /disk1/scl/CMAQ/CMAQ-5.2/lib ) then
echo Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2
Model repository base path: /disk1/scl/CMAQ/CMAQ-5.2
echo library path: /disk1/scl/CMAQ/CMAQ-5.2/lib
library path: /disk1/scl/CMAQ/CMAQ-5.2/lib
if ( 0 ) then
setenv CMAQ_MODEL /disk1/scl/CMAQ/CMAQ-5.2
echo default Model repository path: /disk1/scl/CMAQ/CMAQ-5.2
default Model repository path: /disk1/scl/CMAQ/CMAQ-5.2
endif
set BLD_OS = uname -s
uname -s
if ( Linux != Linux ) then
if ( 0 ) then
if ( 0 ) then
set PIO =
endif
if ( 1 ) then
echo Parallel; set MPI flags
Parallel; set MPI flags
set ModStenex = STENEX/se
set ModPario = PARIO
set ModPar = par/mpi
set PARIO = /disk1/scl/CMAQ/CMAQ-5.2/PARIO
set STENEX = /disk1/scl/CMAQ/CMAQ-5.2/STENEX
set PAR = ( -Dparallel )
set Popt = SE
set seL = se_snl
set LIB2 = -lioapi
set LIB3 =
set Str1 = ( // Parallel / Include message passing definitions )
set Str2 = ( include SUBST_MPI mpif.h ; )
else
set ModMech = MECHS/cb05e51_ae6_aq
if ( cb05e51_ae6_aq == saprc07tic_ae6i_aqkmti ) then
set ModTrac = MECHS/trac0
if ( 0 ) then
set POT =
endif
set Bld = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel
if ( ! -e /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel ) then
if ( ! -d /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel ) then
endif
cd /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel
set ICL_PAR = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL/fixed/mpi
set ICL_CONST = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL/fixed/const
set ICL_FILES = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL/fixed/filenames
set ICL_EMCTL = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL/fixed/emctrl
if ( 1 ) then
set ICL_MPI = .
endif
if ( 1 ) then
/bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL/fixed/mpi/PE_COMM.EXT /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel
/bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL/fixed/const/CONST.EXT /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel
/bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL/fixed/filenames/FILES_CTM.EXT /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel
/bin/cp -fp /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src/ICL/fixed/emctrl/EMISPRM.EXT /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel
if ( 1 ) then
/bin/cp -fp ./mpif.h /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel
/bin/cp: ./mpif.h' and /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel/mpif.h’ are the same file
endif
set ICL_PAR = .
set ICL_CONST = .
set ICL_FILES = .
set ICL_EMCTL = .
if ( 1 ) then
set ICL_MPI = .
endif
endif
set STX1 = ( -DSUBST_BARRIER=SE_BARRIER -DSUBST_GLOBAL_MAX=SE_GLOBAL_MAX -DSUBST_GLOBAL_MIN=SE_GLOBAL_MIN -DSUBST_GLOBAL_MIN_DATA=SE_GLOBAL_MIN_DATA -DSUBST_GLOBAL_TO_LOCAL_COORD=SE_GLOBAL_TO_LOCAL_COORD -DSUBST_GLOBAL_SUM=SE_GLOBAL_SUM -DSUBST_GLOBAL_LOGICAL=SE_GLOBAL_LOGICAL -DSUBST_LOOP_INDEX=SE_LOOP_INDEX -DSUBST_SUBGRID_INDEX=SE_SUBGRID_INDEX )
set STX2 = ( -DSUBST_HI_LO_BND_PE=SE_HI_LO_BND_PE -DSUBST_SUM_CHK=SE_SUM_CHK -DSUBST_INIT_ARRAY=SE_INIT_ARRAY -DSUBST_COMM=SE_COMM -DSUBST_MY_REGION=SE_MY_REGION -DSUBST_SLICE=SE_SLICE -DSUBST_GATHER=SE_GATHER -DSUBST_DATA_COPY=SE_DATA_COPY -DSUBST_IN_SYN=SE_IN_SYN )
set Cfile = /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel/CCTM_v52.cfg.bld
set quote = "
echo
echo model CCTM_v52.exe;
echo
echo repo /disk1/scl/CMAQ/CMAQ-5.2/CCTM/src;
echo
echo mechanism cb05e51_ae6_aq;
echo
echo lib_base /disk1/scl/CMAQ/CMAQ-5.2/lib;
echo
echo lib_1 ioapi/Linux2_x86_64ifort;
echo
echo lib_2 ioapi/ioapi/fixed_src;
echo
if ( 1 ) then
echo lib_3 “mpi -I.”;
echo
endif
echo
echo lib_4 ioapi/Linux2_x86_64ifort;
echo
set text = " -Dparallel -DSUBST_BARRIER=SE_BARRIER -DSUBST_GLOBAL_MAX=SE_GLOBAL_MAX -DSUBST_GLOBAL_MIN=SE_GLOBAL_MIN -DSUBST_GLOBAL_MIN_DATA=SE_GLOBAL_MIN_DATA -DSUBST_GLOBAL_TO_LOCAL_COORD=SE_GLOBAL_TO_LOCAL_COORD -DSUBST_GLOBAL_SUM=SE_GLOBAL_SUM -DSUBST_GLOBAL_LOGICAL=SE_GLOBAL_LOGICAL -DSUBST_LOOP_INDEX=SE_LOOP_INDEX -DSUBST_SUBGRID_INDEX=SE_SUBGRID_INDEX -DSUBST_HI_LO_BND_PE=SE_HI_LO_BND_PE -DSUBST_SUM_CHK=SE_SUM_CHK -DSUBST_INIT_ARRAY=SE_INIT_ARRAY -DSUBST_COMM=SE_COMM -DSUBST_MY_REGION=SE_MY_REGION -DSUBST_SLICE=SE_SLICE -DSUBST_GATHER=SE_GATHER -DSUBST_DATA_COPY=SE_DATA_COPY -DSUBST_IN_SYN=SE_IN_SYN";
echo cpp_flags " -Dparallel -DSUBST_BARRIER=SE_BARRIER -DSUBST_GLOBAL_MAX=SE_GLOBAL_MAX -DSUBST_GLOBAL_MIN=SE_GLOBAL_MIN -DSUBST_GLOBAL_MIN_DATA=SE_GLOBAL_MIN_DATA -DSUBST_GLOBAL_TO_LOCAL_COORD=SE_GLOBAL_TO_LOCAL_COORD -DSUBST_GLOBAL_SUM=SE_GLOBAL_SUM -DSUBST_GLOBAL_LOGICAL=SE_GLOBAL_LOGICAL -DSUBST_LOOP_INDEX=SE_LOOP_INDEX -DSUBST_SUBGRID_INDEX=SE_SUBGRID_INDEX -DSUBST_HI_LO_BND_PE=SE_HI_LO_BND_PE -DSUBST_SUM_CHK=SE_SUM_CHK -DSUBST_INIT_ARRAY=SE_INIT_ARRAY -DSUBST_COMM=SE_COMM -DSUBST_MY_REGION=SE_MY_REGION -DSUBST_SLICE=SE_SLICE -DSUBST_GATHER=SE_GATHER -DSUBST_DATA_COPY=SE_DATA_COPY -DSUBST_IN_SYN=SE_IN_SYN";
echo
echo f_compiler mpiifort;
echo
echo fstd “-O3 -fno-alias -mp1 -fp-model source”;
echo
echo dbg “-O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback”;
echo
echo f_flags “-fixed -132”;
echo
echo f90_flags “-free”;
echo
echo c_compiler icc;
echo
echo c_flags “-O2 -DFLDMN -I”;
echo
echo link_flags “”;
echo
echo ioapi “-lioapi”;
echo
echo netcdf “-lnetcdff -lnetcdf”;
echo
if ( 1 ) then
echo mpich " ";
echo
endif
echo include SUBST_PE_COMM ./PE_COMM.EXT;
echo include SUBST_CONST ./CONST.EXT;
echo include SUBST_FILES_ID ./FILES_CTM.EXT;
echo include SUBST_EMISPRM ./EMISPRM.EXT;
echo
if ( 1 ) then
echo // Parallel / Include message passing definitions
echo include SUBST_MPI ./mpif.h;
endif
echo
set text = stenex or se_noop
echo // options are stenex or se_noop
echo Module STENEX/se;
if ( 1 ) then
set text = // parallel executable; stenex and pario included
echo // parallel executable; stenex and pario included
echo Module PARIO;
else
echo
set text = par, par_nodistr and par_noop
echo // options are par, par_nodistr and par_noop
if ( 1 ) then
echo Module par/mpi;
endif
echo
if ( 0 ) then
set text = wrf and yamo
echo // options are wrf and yamo
echo Module driver/wrf;
echo
set text = cartesian
echo // options are cartesian
echo Module grid/cartesian;
echo
set text = yamo
echo // options are yamo
echo Module init/yamo;
echo
set text = gencoor_wrf and gencoor
echo // options are gencoor_wrf and gencoor
echo Module couple/gencoor_wrf;
echo
set text = yamo
echo // options are yamo
echo Module hadv/yamo;
echo
set text = wrf and yamo
echo // options are wrf and yamo
echo Module vadv/wrf;
echo
set text = multiscale
echo // options are multiscale
echo Module hdiff/multiscale;
echo
set text = acm2
echo // options are acm2
echo Module vdiff/acm2;
echo
set text = m3dry
echo // options are m3dry
echo Module depv/m3dry;
echo
set text = emis
echo // options are emis
echo Module emis/emis;
echo
set text = beis3
echo // options are beis3
echo Module biog/beis3;
echo
set text = smoke
echo // options are smoke
echo Module plrise/smoke;
echo
set text = cgrid_spcs_nml and cgrid_spcs_icl
echo // options are cgrid_spcs_nml and cgrid_spcs_icl
echo Module spcs/cgrid_spcs_nml;
echo
set text = inline and table
echo // options are inline and table
echo Module phot/inline;
echo
set text = gas chemistry solvers
echo // gas chemistry solvers
set text = smvgear, ros3, and ebi_; see ‘gas chemistry mechanisms’ for
echo // options are smvgear, ros3, and ebi_; see ‘gas chemistry mechanisms’ for
echo Module gas/ebi_cb05e51_ae6_aq;
echo
set MechList = cb05e51_ae6_aq, cb05e51_ae6nvPOA_aq, cb05eh51_ae6_aq, cb05mp51_ae6_aq, cb05tucl_ae6_aq, cb05tump_ae6_aq, cb6r3_ae6_aq, cb6r3_ae6nvPOA_aq, racm2_ae6_aq, saprc07tb_ae6_aq, saprc07tc_ae6_aq, saprc07tc_ae6nvPOA_aq, saprc07tic_ae6i_aq, saprc07tic_ae6i_aqkmti, saprc07tic_ae6invPOA_aq
set text = gas chemistry mechanisms
echo // gas chemistry mechanisms
set text = cb05e51_ae6_aq, cb05e51_ae6nvPOA_aq, cb05eh51_ae6_aq, cb05mp51_ae6_aq, cb05tucl_ae6_aq, cb05tump_ae6_aq, cb6r3_ae6_aq, cb6r3_ae6nvPOA_aq, racm2_ae6_aq, saprc07tb_ae6_aq, saprc07tc_ae6_aq, saprc07tc_ae6nvPOA_aq, saprc07tic_ae6i_aq, saprc07tic_ae6i_aqkmti, saprc07tic_ae6invPOA_aq
echo // options are cb05e51_ae6_aq, cb05e51_ae6nvPOA_aq, cb05eh51_ae6_aq, cb05mp51_ae6_aq, cb05tucl_ae6_aq, cb05tump_ae6_aq, cb6r3_ae6_aq, cb6r3_ae6nvPOA_aq, racm2_ae6_aq, saprc07tb_ae6_aq, saprc07tc_ae6_aq, saprc07tc_ae6nvPOA_aq, saprc07tic_ae6i_aq, saprc07tic_ae6i_aqkmti, saprc07tic_ae6invPOA_aq
echo Module MECHS/cb05e51_ae6_aq;
echo
set text = tracer modules
echo // tracer modules
echo // options are trac0, trac1
echo Module MECHS/trac0;
echo
if ( 0 ) then
set text = aero6
echo // options are aero6
echo Module aero/aero6;
echo
set text = acm_ae6, acm_ae6_kmt, and acm_ae6_mp
echo // options are acm_ae6, acm_ae6_kmt, and acm_ae6_mp
echo Module cloud/acm_ae6;
echo
set text = // compile for inline process analysis
echo // compile for inline process analysis
echo Module procan/pa;
echo
set text = util
echo // options are util
echo Module util/util;
echo
if ( 0 ) then
unalias mv rm
if ( 1 || ! -f /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe ) then
cd /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/scripts
./bldit_bldmake.csh
rm: cannot remove `/disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe’: No such file or directory
ld: cannot find -lmpifort
ERROR BLDMAKE Compile failed
endif
cd /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel
if ( 1 ) then
set Blder = /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -verbose
else
if ( 0 ) then
if ( 1 ) then
/disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -verbose /disk1/scl/CMAQ/CMAQ-5.2/CCTM/scripts/BLD_CCTM_v52_intel/CCTM_v52.cfg.bld
/disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe: Command not found.
else if ( 0 ) then
endif
mv Makefile Makefile.intel
mv: accessing Makefile.intel': Too many levels of symbolic links if ( -e Makefile.intel && -e Makefile ) rm Makefile ln -s Makefile.intel Makefile ln: accessing Makefile’: Too many levels of symbolic links
if ( 1 != 0 ) then
echo *** failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -verbose ***
*** failure in /disk1/scl/CMAQ/CMAQ-5.2/UTIL/bldmake/bldmake_intel.exe -verbose ***
exit 1