Dear all,
I got this error while running CCTM. Attached are two of the full log files.
CTM_LOG_001.36km_2018001.txt (43.3 KB)
File “CSQY_DATA” opened for input on unit: 94
/home/catalyst/Desktop/Build_WRF/CMAQv5.0.1/scripts/cctm/BLD_saprc99_ae6_aq/CSQY_DATA_saprc99_ae6_aq
Sucessfully Loaded JTABLE
>>--->> WARNING in subroutine PHOT:INTERPX
Variable "LUFRAC_21" not in file GRID_CRO_2D
M3WARN: DTBUF 0:00:00 Jan. 31, 2018 (2018031:000000)
*** ERROR ABORT in subroutine PHOT on PE 004
Could not read LUFRAC_21 from GRID_CRO_2D
PM3EXIT: DTBUF 0:00:00 Jan. 31, 2018
Date and time 0:00:00 Jan. 31, 2018 (2018031:000000)
AND
Aerosol Emissions Processing in Vertical diffusion …
— Aero Species Mapped —
— PM Emis Species Mapped —
— Precursor Species Mapped —
Value for CTM_SSEMDIAG not defined;returning default: FALSE
Flag for writing the sea-salt-emission diagnostic file
Environment variable not set … Using default: 0
Value for CTM_WB_DUST: N returning FALSE
=== aerospc em_map
1 2 ASO4J 1
2 2 ANO3J 4
3 2 ACLJ 34
4 2 ANH4J 3
5 2 ANAJ 32
6 2 AMGJ 19
7 2 AKJ 20
8 2 ACAJ 18
9 1 APOCI 7
9 2 APOCJ 6
10 1 APNCOMI 9
10 2 APNCOMJ 8
11 1 AECI 11
11 2 AECJ 10
12 2 AFEJ 14
13 2 AALJ 15
14 2 ASIJ 16
15 2 ATIJ 17
16 2 AMNJ 21
17 2 AH2OJ 30
18 2 AOTHRJ 12
39 3 ACORS 22
modified aerospc em_fac
Value for CTM_PT3DEMIS: N returning FALSE
======================================================================
— Subroutine: M3DRY
— Found canopy wetness (WR) in MET_CRO_2D
======================================================================
— Subroutine: M3DRY
— Found 2-m water vapor mixing ratio (Q2) in MET_CRO_2D
>>--->> WARNING in subroutine GET_EMIS:INTERPX
Variable "HONO" not in file EMIS_1
M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600)
>>--->> WARNING in subroutine GET_EMIS on PE 000
Could not read HONO from EMIS_1
M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600)
>>--->> WARNING in subroutine GET_EMIS:INTERPX
Variable "ARO1NBZ" not in file EMIS_1
M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600)
>>--->> WARNING in subroutine GET_EMIS on PE 000
Could not read ARO1NBZ from EMIS_1
M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600)
>>--->> WARNING in subroutine GET_EMIS:INTERPX
Variable "BENZENE" not in file EMIS_1
M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600)
>>--->> WARNING in subroutine GET_EMIS on PE 000
Could not read BENZENE from EMIS_1
M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600)
>>--->> WARNING in subroutine GET_SSEMIS:INTERPX
Variable "SURF" not in file OCEAN_1
M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600)
>>--->> WARNING in subroutine GET_SSEMIS on PE 000
Could not interpolate SURF from OCEAN_1 . Surf-zone emissions set to zero.
M3WARN: DTBUF 0:06:00 Jan. 31, 2018 (2018031:000600)
Value for KZMIN: Y returning TRUE
Maximum eddy diffusivity of: 247.62 (m**2/sec)
at col, row, layer: 1, 30, 5
corresponding to a free tropospheric wind shear of: 1.41661E-03 (/sec),
a bulk Richardson Number of: -154.51 ,
and pot. temps. in layer and layer+1: 290.75 290.02
after VDIFF G 1.2116558E-01 A 1.2153504E+09 N 1.2268167E-04
after COUPLE_WR G 9.3365820E+02 A 1.0044680E+13 N 9.6260780E-01
No BC's in file BNDY_GASC_1 for the following adv species: Set to 1.00E-30
MEOH
PROD2
RCO_OOH
RCO_OH
PBZN
MA_PAN
ACET
NPHE
PHEN
RCHO
BACL
BALD
ISOPROD
DCB1
DCB3
TRP1
SESQ
No BC's in file BNDY_AERO_1 for the following adv species: Set to 1.00E-30
ANH4J
ANH4I
ANO3J
ANO3I
AORGCJ
APOCJ
APOCI
APNCOMJ
APNCOMI
AECJ
AECI
AOTHRJ
AOTHRI
AFEJ
AALJ
ASIJ
ATIJ
ACAJ
AMGJ
AKJ
AMNJ
AH2OJ
AH2OI
ANAJ
ANAI
ACLJ
ACLI
ASEACAT
ACLK
ASO4K
ANH4K
ANO3K
AH2OK
No BC's in file BNDY_NONR_1 for the following adv species: Set to 1.00E-30
HCL
Reading U-windfield from MET_DOT_3D for variable: UWINDC
Reading V-windfield from MET_DOT_3D for variable: VWINDC
layer S (X3FACE_GD) Delta S
1 0.0100000 0.0100000 1.0000000
2 0.0200000 0.0100000 1.0000000
3 0.0300000 0.0100000 1.0000000
4 0.0400000 0.0100001 1.0000000
5 0.0500000 0.0100000 1.0000000
6 0.0600000 0.0100000 1.0000000
7 0.0700000 0.0100000 1.0000000
8 0.0900000 0.0200000 1.0000000
9 0.1100000 0.0200000 1.0000000
10 0.1300000 0.0200000 1.0000000
11 0.1500000 0.0200000 1.0000000
12 0.2250000 0.0750000 1.0000000
13 0.3100000 0.0850000 1.0000000
14 0.4000000 0.0900000 1.0000000
15 0.5250000 0.1250000 1.0000000
16 0.7100000 0.1850001 1.0000000
17 0.9100000 0.1999999 1.0000000
18 1.0000000 0.0900000 1.0000000
after ADV G 9.3362909E+02 A 1.0066116E+13 N 9.6747971E-01
H-eddy DT & integration steps: 7.2000000E+02 1
after HDIFF G 9.3362909E+02 A 1.0066116E+13 N 9.6747959E-01
after DECOUPLE_ G 1.2118143E-01 A 1.2175133E+09 N 1.2341718E-04
Value for CLD_DIAG: N returning FALSE
CTM_WET_DEP_1 :/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.WETDEP1.36km_2018031
>>--->> WARNING in subroutine OPEN3
File not available.
Could not open CTM_WET_DEP_1 file for update - try to open new
"CTM_WET_DEP_1" opened as NEW(READ-WRITE )
File name "/home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/CCTM_saprc99_ae6_aq_Linux4_x86_64gcc.WETDEP1.36km_2018031"
File type GRDDED3
Execution ID "CCTM_saprc99_ae6_aq_Linux4_x86_64gcc"
Grid name "36km"
Dimensions: 79 rows, 95 cols, 1 lays, 118 vbles
NetCDF ID: 1376256 opened as VOLATILE READWRITE
Starting date and time 2018031:010000 (1:00:00 Jan. 31, 2018)
Timestep 010000 (1:00:00 hh:mm:ss)
Maximum current record number 0
no surrogates for aqueous species CO2...using background value of 340.0000
--- AQCHEM Gas and Aerosol Species Mapped ---
application called MPI_Abort(MPI_COMM_WORLD, 0) - process 6
0.0u 0.0s 0:03.41 0.2% 0+0k 0+0io 0pf+0w
mkdir -p /home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/logs/2018031
mv ./CTM_LOG_001.36km_2018031 ./CTM_LOG_002.36km_2018031 ./CTM_LOG_003.36km_2018031 ./CTM_LOG_004.36km_2018031 ./CTM_LOG_005.36km_2018031 ./CTM_LOG_006.36km_2018031 ./CTM_LOG_007.36km_2018031 /home/catalyst/Desktop/Build_WRF/CMAQv5.0.2/scripts/cctm/cctm_36km/logs/2018031
@ i = 30 + 1
end
while ( 31 < 31 )
date
Mon Dec 16 00:24:06 CST 2019
exit
Your help would be really appreciated as usual.
Thanks
CatalystCTM_LOG_004.36km_2018031.txt (47.9 KB)