Hello @eyth.alison
Sorry for the late reply. The standard output from the terminal:
[Michael@ADEQPlanning merge]$ echo SMK_HOME
/home/Michael/Documents/SMOKE
[Michael@ADEQPlanning merge] ./TRIAL_Sector_merge_12US1_2028fh_16j.csh
testing SRGPRO_PATH set by SRGPRO input: /home/Michael/Documents/SMOKE/2016setupEPA/ge_dat/gridding/surrogates/CONUS12_2014_30apr2019/
Linux2_x86_64ifort
NOTE: Default MONTH setting to ‘jan’
cut: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/scripts/sectorlist_2028fh_02aug2019_v0: No such file or directory
/bin/ls: No match.
/bin/ls: No match.
/bin/ls: No match.
/bin/ls: No match.
SCRIPT NOTE: Setting months with no partial months
SCRIPT NOTE: Getting representative merge dates path from MRGDATE_FILES
SCRIPT NOTE: Using spinup dates for month 12 of previous year during merge
cat: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/scripts/sectorlist_2028fh_02aug2019_v0: No such file or directory
Running merge script for 12/22/2015, using data files:
cut: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/scripts/sectorlist_2028fh_02aug2019_v0: No such file or directory
cut: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/scripts/sectorlist_2028fh_02aug2019_v0: No such file or directory
cut: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/scripts/sectorlist_2028fh_02aug2019_v0: No such file or directory
Running part 4, for 20151222…
SCRIPT NOTE: Automatically deleting log file.
/run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/intermed/mrggrid/logs/mrggrid_all_2028fh_16j_20151222_12US1_cmaq_cb6_nobeis_norwc.log
This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
I/O Applications Programming Interface, [I/O API] which is
built on top of the netCDF I/O library (Copyright 1993, 1996
University Corporation for Atmospheric Research/Unidata
Program) and the PVM parallel-programming library (from
Oak Ridge National Laboratory).
Copyright (C) 1992-2002 MCNC,
(C) 1992-2018 Carlie J. Coats, Jr.,
(C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and
(C) 2014-2020 UNC Institute for the Environment.
Released under the GNU LGPL License, version 2.1. See URL
https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html
for conditions of use.
ioapi-3.2: $Id: init3.F90 185 2020-08-28 16:49:45Z coats $
netCDF version 4.7.4 of Apr 7 2021 16:50:09 $
SMOKE ---------------
Copyright (c)2004 Environmental Modeling for Policy Development
All rights reserved
Program MRGGRID, Version SMOKEv4.7_Oct2019
Online documentation
http://www.cep.unc.edu/empd/products/smoke
Program MRGGRID reads 2-D area, biogenic, mobile, and 3-D
point source emissions and merges into a single 3-D file.
The time period merged is adjusted based on the latest
starting file and earliest ending file. All variables are
merged, even if different variables are in each file.
You will need to enter the logical names for the input and
output files (and to have set them prior to program start,
using "setenv <logicalname> <pathname>").
You may use END_OF-FILE (control-D) to quit the program
during logical-name entry. Default responses are given in
brackets [LIKE THIS] and can be accepted by hitting the
<RETURN> key.
0.004u 0.010s 0:00.03 33.3% 0+0k 19336+0io 13pf+0w
SCRIPT NOTE: timetracker is replacing line 2 of the TIMELOG file
now checking log file /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/intermed/mrggrid/logs/mrggrid_all_2028fh_16j_20151222_12US1_cmaq_cb6_nobeis_norwc.log
- ERROR detected in logfile:
- /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/intermed/mrggrid/logs/mrggrid_all_2028fh_16j_20151222_12US1_cmaq_cb6_nobeis_norwc.log
ERROR: detected in mrggrid
ERROR: Running smk_run for one-time steps
log analyzer
Getting message data (might take some time)…
grep: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/intermed/mrggrid/logs: Is a directory
grep: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/intermed/mrggrid/logs: Is a directory
Finished getting data
Classifying message types…
Total number of known messages: 2
Total number of unknown messages: 0
Level 3 analysis…
Finished classifying message types
log analyzer
Getting message data (might take some time)…
grep: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/intermed/mrggrid/logs: Is a directory
grep: /run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/intermed/mrggrid/logs: Is a directory
Finished getting data
Classifying message types…
Total number of known messages: 2
Total number of unknown messages: 0
Level 1 analysis…
Finished classifying message types
Testing for exit priority <= 1
ERROR: At least one message’s priority is less than or equal to the exit priority: 1
ERROR: Level 1 errors or Level 0 warnings found. Check log files, fix inputs, and rerun.
[Michael@ADEQPlanning merge]$
I have changed only following line from the original script in ’ Sector-specific parameters’ :
setenv OCL2ROOT “$INSTALL_DIR/ocean_cl2/cl2_” to
setenv ptnonipm "/run/media/Michael/HD-LBU3/ptnonipm_ARDEQ/2028fh_16j/smoke_out/2028fh_16j/12US1/cmaq_cb6/ptnonipm"
