I got a segmentation fault followed by the error in the title (***longjmp causes uninitialized stack frame***: CMAQ.exe terminated) in the CMAQv5.3.1 standard output file, as shown below:
However, there is nothing in the standard error file or the CTM_LOG_* files where all input files are successfully read. I am using the bug-fix version of CCTM/src/cio/centralized_io_module.F at https://github.com/USEPA/CMAQ/blob/master/DOCS/Known_Issues/README.md#cmaqv531-i5 to compile CCTM.
Runscript, standard output/error and one LOG file are attached.run_cctm_2016_12US1_stamp2_12US2_testrun_myfix_22may2020.csh (46.2 KB) slurm-5733324_4294967294.out.txt (25.0 KB) slurm-5733324_4294967294.err.txt (43.1 KB) CTM_LOG_047.v531_intel_2016_CONUS_20140102.txt (36.7 KB)