Hello everyone,
I am trying to run CMAQ for a gridded emission input. I encounter the following error while doing it:
Compiler is set to gcc
Working Directory is /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts
Build Directory is /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc
Output Directory is /home/ghajari/Build_CMAQ/CMAQ_Project/data/output_CCTM_v532_gcc_Iran_10km
Log Directory is /home/ghajari/Build_CMAQ/CMAQ_Project/data/output_CCTM_v532_gcc_Iran_10km/LOGS
Executable Name is CCTM_v532.exe
---CMAQ EXECUTION ID: CMAQ_CCTMv532_ghajari_20210731_115742_526348971 ---
Set up input and output files for Day 2020-12-24.
CMAQ Processing of Day 20201224 Began at شنبه ۳۱ جولای ۲۱، ساعات ۱۶:۲۷:۴۲ (+0430)
CTM_APPL | v532_gcc_Iran_10km_20201224
================================================================================
| |
| The Community Multiscale Air Quality (CMAQ) Model |
| Version 5.3.2 |
| |
| Built and Maintained by the |
| Office of Research and Development |
| United States Environmental Protection Agency |
| |
| https://www.epa.gov/cmaq |
| |
| Source Code: https://www.github.com/USEPA/cmaq/tree/master |
| Documentation: https://www.github.com/USEPA/cmaq/tree/master/DOCS |
| |
| The CMAQ Model is tested and released with cooperation from |
| the Community Modeling and Analysis System (CMAS) Center via |
| contract support. CMAS is managed by the Institute for the |
| Environment, University of North Carolina at Chapel Hill. |
| CMAS URL: (https://www.cmascenter.org) |
| |
================================================================================
This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
I/O Applications Programming Interface, [I/O API] which is
built on top of the netCDF I/O library (Copyright 1993, 1996
University Corporation for Atmospheric Research/Unidata
Program) and the PVM parallel-programming library (from
Oak Ridge National Laboratory).
Copyright (C) 1992-2002 MCNC,
(C) 1992-2018 Carlie J. Coats, Jr.,
(C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and
(C) 2014-2021 UNC Institute for the Environment.
Released under the GNU LGPL License, version 2.1. See URL
https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html
for conditions of use.
ioapi-3.2: $Id: init3.F90 200 2021-05-10 14:06:20Z coats $
netCDF version 4.7.4 of Jul 11 2021 01:42:43 $
===========================================
|>--- ENVIRONMENT VARIABLE REPORT ---<|
===========================================
|> Grid and High-Level Model Parameters:
+=========================================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
BLD | (default)
OUTDIR | /home/ghajari/Build_CMAQ/CMAQ_Project/data/output_CCTM_v532_gcc_Iran_10km
NEW_START | T
ISAM_NEW_START | Y (default)
GRID_NAME | CMAQ-Iran
CTM_TSTEP | 10000
CTM_RUNLEN | 430000
CTM_PROGNAME | DRIVER (default)
CTM_STDATE | 2020359
CTM_STTIME | 60000
CTM_MAXSYNC | 300
CTM_MINSYNC | 60
|> Multiprocess control, output and error checking:
+====================================================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
PRINT_PROC_TIME | T
FL_ERR_STOP | F
CTM_CKSUM | T
AVG_FILE_ENDTIME | F
AVG_CONC_SPCS | ALL
CONC_SPCS | ALL
ACONC_BLEV_ELEV | 1 1
CONC_BLEV_ELEV | 1 1
IOAPI_LOG_WRITE | F
VERTEXT | F
VERTEXT_COORD_PA | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/lonlat.csv
gc_matrix_nml | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/GC_cb6r3_ae7_aq.nml
ae_matrix_nml | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/AE_cb6r3_ae7_aq.nml
nr_matrix_nml | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/NR_cb6r3_ae7_aq.nml
tr_matrix_nml | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/Species_Table_TR_0.nml
|> Chemistry and Photolysis:
+=============================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CTM_PHOTDIAG | F
CORE_SHELL_OPTIC | F (default)
OPTICS_MIE_CALC | F (default)
GEAR_ATOL | 0.100E-08 (default)
GEAR_RTOL | 0.100E-02 (default)
RB_RTOL | 0.100E-02 (default)
RB_ATOL | 0.100E-06 (default)
|> Aerosols:
+=============
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CTM_AVISDIAG | F (default)
CTM_ZERO_PCSOA | F (default)
CTM_AOD | F (default)
CTM_PMDIAG | F
CTM_APMDIAG | T
APMDIAG_BLEV_ELE | 1 1
AVG_PMDIAG_SPCS | (default)
STM_SO4TRACK | F
|> Cloud Processes:
+====================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CLD_DIAG | F
|> Air-Surface Exchange Processes:
+===================================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
PX_VERSION | F
CTM_ABFLUX | F
CTM_MOSAIC | F
CTM_SFC_HONO | T
CLM_VERSION | F
NOAH_VERSION | T
CTM_STAGE | F (default)
CTM_DEPV_FILE | F
CTM_HGBIDI | F
CTM_BIDI_FERT_NH | T
CTM_WBDUST_BELD | BELD3
|> Transport Processes:
+========================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CTM_VDIFF_DIAG_F | F (default)
SIGMA_SYNC_TOP | 0.700E+00
ADV_HDIV_LIM | 0.900E+00 (default)
CTM_ADV_CFL | 0.950E+00
KZMIN | T
CTM_WVEL | T
CTM_GRAV_SETL | T
|> Emissions Parameters:
+=========================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
EMISSCTRL_NML | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/EmissCtrl_cb6r3_ae7_aq.nml
CTM_EMLAYS | 0 (default)
N_EMIS_GR | 1
N_EMIS_TR | 0 (default)
CTM_EMISCHK | F
CTM_BIOGEMIS | F
BIOG_SPRO | DEFAULT (default)
BIOSW_YN | F (default)
SUMMER_YN | T (default)
B3GTS_DIAG | F
CTM_MGEMDIAG | F (default)
CTM_OCEAN_CHEM | T
CTM_WB_DUST | F
CTM_DUSTEM_DIAG | F
CTM_SSEMDIAG | F
CTM_LTNG_NO | F
LTNG_ASSIM_DT | 0 (default)
LTNGNO | InLine (default)
USE_NLDN | F (default)
LTNGDIAG | F
MOLSNCG | 0.350E+03 (default)
MOLSNIC | 0.350E+03 (default)
N_EMIS_PT | 0
IPVERT | 0 (default)
EMISDIAG | F
EMIS_SYM_DATE | F (default)
|> Process Analysis Parameters:
+================================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CTM_PROCAN | F
PA_BCOL_ECOL | (default)
PA_BROW_EROW | (default)
PA_BLEV_ELEV | (default)
MET_TSTEP | 10000 (default)
MET data determined based on WRF ARW version 4.1.1
-=- MPP Processor-to-Subdomain Map -=-
Number of Processors = 1
____________________________________________________
| |
| PE #Cols Col_Range #Rows Row_Range |
|__________________________________________________|
| |
| 0 229 1: 229 187 1: 187 |
|__________________________________________________|
^C
ghajari@davood-ProLiant-DL380p-Gen8:~/Build_CMAQ/CMAQ_Project/CCTM/scripts$ ./run_cctm_edgar_2.csh
Start Model Run At شنبه ۳۱ جولای ۲۱، ساعات ۱۶:۲۸:۲۱ (+0430)
Compiler is set to gcc
Working Directory is /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts
Build Directory is /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc
Output Directory is /home/ghajari/Build_CMAQ/CMAQ_Project/data/output_CCTM_v532_gcc_Iran_10km
Log Directory is /home/ghajari/Build_CMAQ/CMAQ_Project/data/output_CCTM_v532_gcc_Iran_10km/LOGS
Executable Name is CCTM_v532.exe
---CMAQ EXECUTION ID: CMAQ_CCTMv532_ghajari_20210731_115821_375304495 ---
Set up input and output files for Day 2020-12-24.
CMAQ Processing of Day 20201224 Began at شنبه ۳۱ جولای ۲۱، ساعات ۱۶:۲۸:۲۱ (+0430)
CTM_APPL | v532_gcc_Iran_10km_20201224
================================================================================
| |
| The Community Multiscale Air Quality (CMAQ) Model |
| Version 5.3.2 |
| |
| Built and Maintained by the |
| Office of Research and Development |
| United States Environmental Protection Agency |
| |
| https://www.epa.gov/cmaq |
| |
| Source Code: https://www.github.com/USEPA/cmaq/tree/master |
| Documentation: https://www.github.com/USEPA/cmaq/tree/master/DOCS |
| |
| The CMAQ Model is tested and released with cooperation from |
| the Community Modeling and Analysis System (CMAS) Center via |
| contract support. CMAS is managed by the Institute for the |
| Environment, University of North Carolina at Chapel Hill. |
| CMAS URL: (https://www.cmascenter.org) |
| |
================================================================================
This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3
I/O Applications Programming Interface, [I/O API] which is
built on top of the netCDF I/O library (Copyright 1993, 1996
University Corporation for Atmospheric Research/Unidata
Program) and the PVM parallel-programming library (from
Oak Ridge National Laboratory).
Copyright (C) 1992-2002 MCNC,
(C) 1992-2018 Carlie J. Coats, Jr.,
(C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and
(C) 2014-2021 UNC Institute for the Environment.
Released under the GNU LGPL License, version 2.1. See URL
https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html
for conditions of use.
ioapi-3.2: $Id: init3.F90 200 2021-05-10 14:06:20Z coats $
netCDF version 4.7.4 of Jul 11 2021 01:42:43 $
===========================================
|>--- ENVIRONMENT VARIABLE REPORT ---<|
===========================================
|> Grid and High-Level Model Parameters:
+=========================================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
BLD | (default)
OUTDIR | /home/ghajari/Build_CMAQ/CMAQ_Project/data/output_CCTM_v532_gcc_Iran_10km
NEW_START | T
ISAM_NEW_START | Y (default)
GRID_NAME | CMAQ-Iran
CTM_TSTEP | 10000
CTM_RUNLEN | 430000
CTM_PROGNAME | DRIVER (default)
CTM_STDATE | 2020359
CTM_STTIME | 60000
CTM_MAXSYNC | 300
CTM_MINSYNC | 60
|> Multiprocess control, output and error checking:
+====================================================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
PRINT_PROC_TIME | T
FL_ERR_STOP | F
CTM_CKSUM | T
AVG_FILE_ENDTIME | F
AVG_CONC_SPCS | ALL
CONC_SPCS | ALL
ACONC_BLEV_ELEV | 1 1
CONC_BLEV_ELEV | 1 1
IOAPI_LOG_WRITE | F
VERTEXT | F
VERTEXT_COORD_PA | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/lonlat.csv
gc_matrix_nml | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/GC_cb6r3_ae7_aq.nml
ae_matrix_nml | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/AE_cb6r3_ae7_aq.nml
nr_matrix_nml | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/NR_cb6r3_ae7_aq.nml
tr_matrix_nml | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/Species_Table_TR_0.nml
|> Chemistry and Photolysis:
+=============================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CTM_PHOTDIAG | F
CORE_SHELL_OPTIC | F (default)
OPTICS_MIE_CALC | F (default)
GEAR_ATOL | 0.100E-08 (default)
GEAR_RTOL | 0.100E-02 (default)
RB_RTOL | 0.100E-02 (default)
RB_ATOL | 0.100E-06 (default)
|> Aerosols:
+=============
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CTM_AVISDIAG | F (default)
CTM_ZERO_PCSOA | F (default)
CTM_AOD | F (default)
CTM_PMDIAG | F
CTM_APMDIAG | T
APMDIAG_BLEV_ELE | 1 1
AVG_PMDIAG_SPCS | (default)
STM_SO4TRACK | F
|> Cloud Processes:
+====================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CLD_DIAG | F
|> Air-Surface Exchange Processes:
+===================================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
PX_VERSION | F
CTM_ABFLUX | F
CTM_MOSAIC | F
CTM_SFC_HONO | T
CLM_VERSION | F
NOAH_VERSION | T
CTM_STAGE | F (default)
CTM_DEPV_FILE | F
CTM_HGBIDI | F
CTM_BIDI_FERT_NH | T
CTM_WBDUST_BELD | BELD3
|> Transport Processes:
+========================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CTM_VDIFF_DIAG_F | F (default)
SIGMA_SYNC_TOP | 0.700E+00
ADV_HDIV_LIM | 0.900E+00 (default)
CTM_ADV_CFL | 0.950E+00
KZMIN | T
CTM_WVEL | T
CTM_GRAV_SETL | T
|> Emissions Parameters:
+=========================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
EMISSCTRL_NML | /home/ghajari/Build_CMAQ/CMAQ_Project/CCTM/scripts/BLD_CCTM_v532_gcc/EmissCtrl_cb6r3_ae7_aq.nml
CTM_EMLAYS | 0 (default)
N_EMIS_GR | 1
N_EMIS_TR | 0 (default)
CTM_EMISCHK | F
CTM_BIOGEMIS | F
BIOG_SPRO | DEFAULT (default)
BIOSW_YN | F (default)
SUMMER_YN | T (default)
B3GTS_DIAG | F
CTM_MGEMDIAG | F (default)
CTM_OCEAN_CHEM | T
CTM_WB_DUST | F
CTM_DUSTEM_DIAG | F
CTM_SSEMDIAG | F
CTM_LTNG_NO | F
LTNG_ASSIM_DT | 0 (default)
LTNGNO | InLine (default)
USE_NLDN | F (default)
LTNGDIAG | F
MOLSNCG | 0.350E+03 (default)
MOLSNIC | 0.350E+03 (default)
N_EMIS_PT | 0
IPVERT | 0 (default)
EMISDIAG | F
EMIS_SYM_DATE | F (default)
|> Process Analysis Parameters:
+================================
--Env Variable-- | --Value--
--------------------------------------------------------------------------------
CTM_PROCAN | F
PA_BCOL_ECOL | (default)
PA_BROW_EROW | (default)
PA_BLEV_ELEV | (default)
MET_TSTEP | 10000 (default)
MET data determined based on WRF ARW version 4.1.1
-=- MPP Processor-to-Subdomain Map -=-
Number of Processors = 1
____________________________________________________
| |
| PE #Cols Col_Range #Rows Row_Range |
|__________________________________________________|
| |
| 0 229 1: 229 187 1: 187 |
|__________________________________________________|
================================
|>--- TIME INTEGRATION ---<|
================================
Processing Day/Time [YYYYDDD:HHMMSS]: 2020359:060000
Which is Equivalent to (UTC): 6:00:00 Thursday, Dec. 24, 2020
Time-Step Length (HHMMSS): 000500
VDIFF completed... 37.3 seconds
COUPLE completed... 1.0 seconds
HADV completed... 20.9 seconds
ZADV completed... 17.0 seconds
NaN or Infinity detected on processor 000
During HDIFF : Gas NaN | Aer NaN | Non NaN
Command exited with non-zero status 1
real 86.30
user 81.49
sys 4.79
**************************************************************
** Runscript Detected an Error: CGRID file was not written. **
** This indicates that CMAQ was interrupted or an issue **
** exists with writing output. The runscript will now **
** abort rather than proceeding to subsequent days. **
**************************************************************
==================================
***** CMAQ TIMING REPORT *****
==================================
Start Day: 2020-12-24
End Day: 2020-12-26
Number of Simulation Days: 1
Domain Name: CMAQ-Iran
Number of Grid Cells: 1284690 (ROW x COL x LAY)
Number of Layers: 30
Number of Processes: 1
All times are in seconds.
Num Day Wall Time
01 2020-12-24 86.30
Total Time = 86.30
Avg. Time = 86.30
I am attaching the log file in which it indicates error as:
*** ERROR ABORT in subroutine CKSUMMER
NaN or Infinity detected in HDIFF
Is there anything that could be done to overcome this?
Thanks in advance.
Regards,
Amir
CTM_LOG_000.v532_gcc_Iran_10km_20201224.txt (84.5 KB)
