Proble of running CMAQ5.3

CMAQ
1

Hello, I have successfully run the test case. When I opened ISAM and let it mark the power（EGU) point source to simulate CO source resolution, an error occurred.This is a segment error that occurs after it is run.
Start Model Run At Fri Jul 10 08:16:56 CST 2020
Compiler is set to intel

Working Directory is /Raid_38TB/wangying/qinch18/CMAQ53/CCTM/scripts
Build Directory is /Raid_38TB/wangying/qinch18/CMAQ53/CCTM/scripts/BLD_CCTM_v53_intel
Output Directory is /Raid_38TB/wangying/qinch18/CMAQ53/data/output_CCTM_v53_intel_Bench_2016_12SE1
Log Directory is /Raid_38TB/wangying/qinch18/CMAQ53/data/output_CCTM_v53_intel_Bench_2016_12SE1/LOGS
Executable Name is CCTM_v53.exe

—CMAQ EXECUTION ID: CMAQ_CCTMv53_wangying_20200710_001656_807585676 —

Set up input and output files for Day 2016-07-01.

Existing Logs and Output Files for Day 2016-07-01 Will Be Deleted
/bin/rm: No match.

CMAQ Processing of Day 20160701 Began at Fri Jul 10 08:16:57 CST 2020

    CTM_APPL  |  v53_intel_Bench_2016_12SE1_20160701

================================================================================
| |
| The Community Multiscale Air Quality (CMAQ) Model |
| Version 5.3 |
| |
| Built and Maintained by the |
| Office of Research and Development |
| United States Environmental Protection Agency |
| |
| https://www.epa.gov/cmaq |
| |
| Source Code: https://www.github.com/USEPA/cmaq/tree/master |
| Documentation: https://www.github.com/USEPA/cmaq/tree/master/DOCS |
| |
| The CMAQ Model is tested and released with cooperation from |
| the Community Modeling and Analysis System (CMAS) Center via |
| contract support. CMAS is managed by the Institute for the |
| Environment, University of North Carolina at Chapel Hill. |
| CMAS URL: (https://www.cmascenter.org) |
| |

 This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3      
 I/O Applications Programming Interface, [I/O API] which is      
 built on top of the netCDF I/O library (Copyright 1993, 1996    
 University Corporation for Atmospheric Research/Unidata         
 Program) and the PVM parallel-programming library (from         
 Oak Ridge National Laboratory).                                 
 Copyright (C) 1992-2002 MCNC,                                   
 (C) 1992-2018 Carlie J. Coats, Jr.,                             
 (C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and   
 (C) 2014-2019 UNC Institute for the Environment.                
 Released under the GNU LGPL  License, version 2.1.  See URL     
                                                                 
     https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html     
                                                                 
 for conditions of use.                                          
                                                                 
 ioapi-3.2: $Id: init3.F90 136 2019-10-16 13:57:49Z coats $
 netCDF version 4.7.3 of May  7 2020 19:31:24 $
  

 ===========================================
 |>---   ENVIRONMENT VARIABLE REPORT   ---<|
 ===========================================

 |> Grid and High-Level Model Parameters:
 +=========================================
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------
         BLD  |             (default)
      OUTDIR  |  /Raid_38TB/wangying/qinch18/CMAQ53/data/output_CCTM_v53_intel_Bench_2016_12SE1
   NEW_START  |           T

ISAM_NEW_START | Y
GRID_NAME | 2016_12SE1
CTM_TSTEP | 10000
CTM_PROGNAME | DRIVER (default)
CTM_RUNLEN | 240000
CTM_STDATE | 2016183
CTM_STTIME | 0
NPCOL_NPROW | 8 2
CTM_MAXSYNC | 300
CTM_MINSYNC | 60

 |> Multiprocess control, output and error checking:
 +====================================================
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------

PRINT_PROC_TIME | T
FL_ERR_STOP | F
CTM_CKSUM | T
AVG_FILE_ENDTIME | F
AVG_CONC_SPCS | ALL
CONC_SPCS | ALL
ACONC_BLEV_ELEV | 1 1
CONC_BLEV_ELEV | 1 1
IOAPI_LOG_WRITE | F
VERTEXT | F
VERTEXT_COORD_PA | /Raid_38TB/wangying/qinch18/CMAQ53/CCTM/scripts/lonlat.csv
gc_matrix_nml | /Raid_38TB/wangying/qinch18/CMAQ53/CCTM/scripts/BLD_CCTM_v53_intel/GC_cb6r3_ae7_aq.nml
ae_matrix_nml | /Raid_38TB/wangying/qinch18/CMAQ53/CCTM/scripts/BLD_CCTM_v53_intel/AE_cb6r3_ae7_aq.nml
nr_matrix_nml | /Raid_38TB/wangying/qinch18/CMAQ53/CCTM/scripts/BLD_CCTM_v53_intel/NR_cb6r3_ae7_aq.nml
tr_matrix_nml | /Raid_38TB/wangying/qinch18/CMAQ53/CCTM/scripts/BLD_CCTM_v53_intel/Species_Table_TR_0.nml

 |> Chemistry and Photolysis:
 +=============================
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------
CTM_PHOTDIAG  |           F

CORE_SHELL_OPTIC | F (default)
OPTICS_MIE_CALC | F (default)
GEAR_ATOL | 0.100E-08 (default)
GEAR_RTOL | 0.100E-02 (default)
RB_RTOL | 0.100E-02 (default)
RB_ATOL | 0.100E-06 (default)

 |> Aerosols:
 +=============
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------
CTM_AVISDIAG  |           F (default)

CTM_ZERO_PCSOA | F (default)
CTM_AOD | F (default)
CTM_PMDIAG | F
CTM_APMDIAG | T
APMDIAG_BLEV_ELE | 1 1
AVG_PMDIAG_SPCS | (default)
STM_SO4TRACK | F

 |> Cloud Processes:
 +====================
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------
    CLD_DIAG  |           F

 |> Air-Surface Exchange Processes:
 +===================================
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------
  PX_VERSION  |           T
  CTM_ABFLUX  |           T
  CTM_MOSAIC  |           F
CTM_SFC_HONO  |           T
 CLM_VERSION  |           F
NOAH_VERSION  |           F
   CTM_STAGE  |           F (default)

CTM_DEPV_FILE | F
CTM_HGBIDI | F
CTM_BIDI_FERT_NH | T
CTM_WBDUST_BELD | BELD3

 |> Transport Processes:
 +========================
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------

CTM_VDIFF_DIAG_F | F (default)
SIGMA_SYNC_TOP | 0.700E+00
ADV_HDIV_LIM | 0.900E+00 (default)
CTM_ADV_CFL | 0.950E+00
KZMIN | T
CTM_WVEL | T
CTM_GRAV_SETL | T

 |> Emissions Parameters:
 +=========================
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------

EMISSCTRL_NML | /Raid_38TB/wangying/qinch18/CMAQ53/CCTM/scripts/BLD_CCTM_v53_intel/EmissCtrl_cb6r3_ae7_aq.nml
CTM_EMLAYS | 0 (default)
N_EMIS_GR | 2
N_EMIS_TR | 0 (default)
CTM_EMISCHK | F
CTM_BIOGEMIS | T
BIOG_SPRO | DEFAULT (default)
BIOSW_YN | T
B3GTS_DIAG | F
CTM_MGEMDIAG | F (default)
CTM_OCEAN_CHEM | T
CTM_WB_DUST | F
CTM_DUSTEM_DIAG | F
CTM_SSEMDIAG | F
CTM_LTNG_NO | F
LTNG_ASSIM_DT | 0 (default)
LTNGNO | InLine (default)
USE_NLDN | F (default)
LTNGDIAG | F
MOLSNCG | 0.350E+03 (default)
MOLSNIC | 0.350E+03 (default)
N_EMIS_PT | 8
IPVERT | 0 (default)
EMISDIAG | F

 |> Process Analysis Parameters:
 +================================
  --Env Variable-- | --Value--
  --------------------------------------------------------------------------------
  CTM_PROCAN  |           F
PA_BCOL_ECOL  |             (default)
PA_BROW_EROW  |             (default)
PA_BLEV_ELEV  |             (default)

 MET data determined based on WRF ARM version 3.8


      -=-  MPP Processor-to-Subdomain Map  -=-
             Number of Processors =  16
____________________________________________________
|                                                  |
|  PE    #Cols    Col_Range     #Rows    Row_Range |
|__________________________________________________|
|                                                  |
|  0       13      1:  13         40      1:  40   |
|  1       13     14:  26         40      1:  40   |
|  2       13     27:  39         40      1:  40   |
|  3       13     40:  52         40      1:  40   |
|  4       12     53:  64         40      1:  40   |
|  5       12     65:  76         40      1:  40   |
|  6       12     77:  88         40      1:  40   |
|  7       12     89: 100         40      1:  40   |
|  8       13      1:  13         40     41:  80   |
|  9       13     14:  26         40     41:  80   |
| 10       13     27:  39         40     41:  80   |
| 11       13     40:  52         40     41:  80   |
| 12       12     53:  64         40     41:  80   |
| 13       12     65:  76         40     41:  80   |
| 14       12     77:  88         40     41:  80   |
| 15       12     89: 100         40     41:  80   |
|__________________________________________________|

ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
In SA_LAYERS.F, ISAM_BLEV, ISAM_ELEV, SA_NLAYS: 1 1
1
AISAM_BLEV_ELEV | 1 1
SA_IO_LIST Sucessfully Opened
Start counting the list…
TAG NAME |PT1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
ISAM_BLEV_ELEV | 1 1
AISAM_BLEV_ELEV | 1 1
Finished write3 S = 57
While N_SPCTAG = 56
ACLJ_PT1 ACLJ_PT1 kg/hectare
hourly wetdeposition values

ACLI_PT1 ACLI_PT1 kg/hectare
hourly wetdeposition values

ANAJ_PT1 ANAJ_PT1 kg/hectare
hourly wetdeposition values

ANAI_PT1 ANAI_PT1 kg/hectare
hourly wetdeposition values

AMGJ_PT1 AMGJ_PT1 kg/hectare
hourly wetdeposition values

AKJ_PT1 AKJ_PT1 kg/hectare
hourly wetdeposition values

ACAJ_PT1 ACAJ_PT1 kg/hectare
hourly wetdeposition values

AFEJ_PT1 AFEJ_PT1 kg/hectare
hourly wetdeposition values

AALJ_PT1 AALJ_PT1 kg/hectare
hourly wetdeposition values

ASIJ_PT1 ASIJ_PT1 kg/hectare
hourly wetdeposition values

ATIJ_PT1 ATIJ_PT1 kg/hectare
hourly wetdeposition values

AMNJ_PT1 AMNJ_PT1 kg/hectare
hourly wetdeposition values

AOTHRJ_PT1 AOTHRJ_PT1 kg/hectare
hourly wetdeposition values

AOTHRI_PT1 AOTHRI_PT1 kg/hectare
hourly wetdeposition values

ACLJ_BCON ACLJ_BCON kg/hectare
hourly wetdeposition values

ACLI_BCON ACLI_BCON kg/hectare
hourly wetdeposition values

ANAJ_BCON ANAJ_BCON kg/hectare
hourly wetdeposition values

ANAI_BCON ANAI_BCON kg/hectare
hourly wetdeposition values

AMGJ_BCON AMGJ_BCON kg/hectare
hourly wetdeposition values

AKJ_BCON AKJ_BCON kg/hectare
hourly wetdeposition values

ACAJ_BCON ACAJ_BCON kg/hectare
hourly wetdeposition values

AFEJ_BCON AFEJ_BCON kg/hectare
hourly wetdeposition values

AALJ_BCON AALJ_BCON kg/hectare
hourly wetdeposition values

ASIJ_BCON ASIJ_BCON kg/hectare
hourly wetdeposition values

ATIJ_BCON ATIJ_BCON kg/hectare
hourly wetdeposition values

AMNJ_BCON AMNJ_BCON kg/hectare
hourly wetdeposition values

AOTHRJ_BCON AOTHRJ_BCON kg/hectare
hourly wetdeposition values

AOTHRI_BCON AOTHRI_BCON kg/hectare
hourly wetdeposition values

ACLJ_OTHR ACLJ_OTHR kg/hectare
hourly wetdeposition values

ACLI_OTHR ACLI_OTHR kg/hectare
hourly wetdeposition values

ANAJ_OTHR ANAJ_OTHR kg/hectare
hourly wetdeposition values

ANAI_OTHR ANAI_OTHR kg/hectare
hourly wetdeposition values

AMGJ_OTHR AMGJ_OTHR kg/hectare
hourly wetdeposition values

AKJ_OTHR AKJ_OTHR kg/hectare
hourly wetdeposition values

ACAJ_OTHR ACAJ_OTHR kg/hectare
hourly wetdeposition values

AFEJ_OTHR AFEJ_OTHR kg/hectare
hourly wetdeposition values

AALJ_OTHR AALJ_OTHR kg/hectare
hourly wetdeposition values

ASIJ_OTHR ASIJ_OTHR kg/hectare
hourly wetdeposition values

ATIJ_OTHR ATIJ_OTHR kg/hectare
hourly wetdeposition values

AMNJ_OTHR AMNJ_OTHR kg/hectare
hourly wetdeposition values

AOTHRJ_OTHR AOTHRJ_OTHR kg/hectare
hourly wetdeposition values

AOTHRI_OTHR AOTHRI_OTHR kg/hectare
hourly wetdeposition values

ACLJ_ICON ACLJ_ICON kg/hectare
hourly wetdeposition values

ACLI_ICON ACLI_ICON kg/hectare
hourly wetdeposition values

ANAJ_ICON ANAJ_ICON kg/hectare
hourly wetdeposition values

ANAI_ICON ANAI_ICON kg/hectare
hourly wetdeposition values

AMGJ_ICON AMGJ_ICON kg/hectare
hourly wetdeposition values

AKJ_ICON AKJ_ICON kg/hectare
hourly wetdeposition values

ACAJ_ICON ACAJ_ICON kg/hectare
hourly wetdeposition values

AFEJ_ICON AFEJ_ICON kg/hectare
hourly wetdeposition values

AALJ_ICON AALJ_ICON kg/hectare
hourly wetdeposition values

ASIJ_ICON ASIJ_ICON kg/hectare
hourly wetdeposition values

ATIJ_ICON ATIJ_ICON kg/hectare
hourly wetdeposition values

AMNJ_ICON AMNJ_ICON kg/hectare
hourly wetdeposition values

AOTHRJ_ICON AOTHRJ_ICON kg/hectare
hourly wetdeposition values

AOTHRI_ICON AOTHRI_ICON kg/hectare
hourly wetdeposition values

 ================================
 |>---   TIME INTEGRATION   ---<|
 ================================

 Processing Day/Time [YYYYDDD:HHMMSS]: 2016183:000000
   Which is Equivalent to (UTC): 0:00:00  Friday,  July 1, 2016
   Time-Step Length (HHMMSS): 000500

ACLJ_PT1 ACLJ_PT1 kg/hectare
hourly RADM drydeposition values

ACLI_PT1 ACLI_PT1 kg/hectare
hourly RADM drydeposition values

ANAJ_PT1 ANAJ_PT1 kg/hectare
hourly RADM drydeposition values

ANAI_PT1 ANAI_PT1 kg/hectare
hourly RADM drydeposition values

AMGJ_PT1 AMGJ_PT1 kg/hectare
hourly RADM drydeposition values

AKJ_PT1 AKJ_PT1 kg/hectare
hourly RADM drydeposition values

ACAJ_PT1 ACAJ_PT1 kg/hectare
hourly RADM drydeposition values

AFEJ_PT1 AFEJ_PT1 kg/hectare
hourly RADM drydeposition values

AALJ_PT1 AALJ_PT1 kg/hectare
hourly RADM drydeposition values

ASIJ_PT1 ASIJ_PT1 kg/hectare
hourly RADM drydeposition values

ATIJ_PT1 ATIJ_PT1 kg/hectare
hourly RADM drydeposition values

AMNJ_PT1 AMNJ_PT1 kg/hectare
hourly RADM drydeposition values

AOTHRJ_PT1 AOTHRJ_PT1 kg/hectare
hourly RADM drydeposition values

AOTHRI_PT1 AOTHRI_PT1 kg/hectare
hourly RADM drydeposition values

ACLJ_BCON ACLJ_BCON kg/hectare
hourly RADM drydeposition values

ACLI_BCON ACLI_BCON kg/hectare
hourly RADM drydeposition values

ANAJ_BCON ANAJ_BCON kg/hectare
hourly RADM drydeposition values

ANAI_BCON ANAI_BCON kg/hectare
hourly RADM drydeposition values

AMGJ_BCON AMGJ_BCON kg/hectare
hourly RADM drydeposition values

AKJ_BCON AKJ_BCON kg/hectare
hourly RADM drydeposition values

ACAJ_BCON ACAJ_BCON kg/hectare
hourly RADM drydeposition values

AFEJ_BCON AFEJ_BCON kg/hectare
hourly RADM drydeposition values

AALJ_BCON AALJ_BCON kg/hectare
hourly RADM drydeposition values

ASIJ_BCON ASIJ_BCON kg/hectare
hourly RADM drydeposition values

ATIJ_BCON ATIJ_BCON kg/hectare
hourly RADM drydeposition values

AMNJ_BCON AMNJ_BCON kg/hectare
hourly RADM drydeposition values

AOTHRJ_BCON AOTHRJ_BCON kg/hectare
hourly RADM drydeposition values

AOTHRI_BCON AOTHRI_BCON kg/hectare
hourly RADM drydeposition values

ACLJ_OTHR ACLJ_OTHR kg/hectare
hourly RADM drydeposition values

ACLI_OTHR ACLI_OTHR kg/hectare
hourly RADM drydeposition values

ANAJ_OTHR ANAJ_OTHR kg/hectare
hourly RADM drydeposition values

ANAI_OTHR ANAI_OTHR kg/hectare
hourly RADM drydeposition values

AMGJ_OTHR AMGJ_OTHR kg/hectare
hourly RADM drydeposition values

AKJ_OTHR AKJ_OTHR kg/hectare
hourly RADM drydeposition values

ACAJ_OTHR ACAJ_OTHR kg/hectare
hourly RADM drydeposition values

AFEJ_OTHR AFEJ_OTHR kg/hectare
hourly RADM drydeposition values

AALJ_OTHR AALJ_OTHR kg/hectare
hourly RADM drydeposition values

ASIJ_OTHR ASIJ_OTHR kg/hectare
hourly RADM drydeposition values

ATIJ_OTHR ATIJ_OTHR kg/hectare
hourly RADM drydeposition values

AMNJ_OTHR AMNJ_OTHR kg/hectare
hourly RADM drydeposition values

AOTHRJ_OTHR AOTHRJ_OTHR kg/hectare
hourly RADM drydeposition values

AOTHRI_OTHR AOTHRI_OTHR kg/hectare
hourly RADM drydeposition values

ACLJ_ICON ACLJ_ICON kg/hectare
hourly RADM drydeposition values

ACLI_ICON ACLI_ICON kg/hectare
hourly RADM drydeposition values

ANAJ_ICON ANAJ_ICON kg/hectare
hourly RADM drydeposition values

ANAI_ICON ANAI_ICON kg/hectare
hourly RADM drydeposition values

AMGJ_ICON AMGJ_ICON kg/hectare
hourly RADM drydeposition values

AKJ_ICON AKJ_ICON kg/hectare
hourly RADM drydeposition values

ACAJ_ICON ACAJ_ICON kg/hectare
hourly RADM drydeposition values

AFEJ_ICON AFEJ_ICON kg/hectare
hourly RADM drydeposition values

AALJ_ICON AALJ_ICON kg/hectare
hourly RADM drydeposition values

ASIJ_ICON ASIJ_ICON kg/hectare
hourly RADM drydeposition values

ATIJ_ICON ATIJ_ICON kg/hectare
hourly RADM drydeposition values

AMNJ_ICON AMNJ_ICON kg/hectare
hourly RADM drydeposition values

AOTHRJ_ICON AOTHRJ_ICON kg/hectare
hourly RADM drydeposition values

AOTHRI_ICON AOTHRI_ICON kg/hectare
hourly RADM drydeposition values

Abort(0) on node 15 (rank 15 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 0) - process 15
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
CCTM_v53.exe 000000000095D154 Unknown Unknown Unknown
libpthread-2.17.s 00001482FD34E5F0 Unknown Unknown Unknown
CCTM_v53.exe 0000000000A1DEE0 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
CCTM_v53.exe 000000000095D154 Unknown Unknown Unknown
libpthread-2.17.s 000014E89950E5F0 Unknown Unknown Unknown
CCTM_v53.exe 00000000009BB500 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
CCTM_v53.exe 000000000095D154 Unknown Unknown Unknown
libpthread-2.17.s 000014F184E965F0 Unknown Unknown Unknown
CCTM_v53.exe 00000000009BB500 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)

2

There is not enough information here for anyone to possibly be able to help. You need to state what case you are running. Does the error occur immediately, or after running for some time? Please recompile the model in debug mode, then rerun. You should get a stack trace with a line number that helps identify the problem.

3

Please see this post on best practices for debugging and posting questions on the forum: PLEASE READ before posting